|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1214 fasta sequence
[GCTGCCCCTCCTCGCCGGAGCAGAGAAACCTCTAGACCGCCTAAACCTACGCAAGGATGCAGGCGCTCCTGCTCTCCCCGGCGGCGGCGCCACGGCCGCCCCTCCCCGCTCCGAGGCGGCCGTCTCTACCCCCTCGAGCCACCTCGATCCTCACGCCGGCGCCGCGCTCCCCCGCTCTCCGTGTGGTGGACGCCTTCGCCGCCGGCCGCTGGGGAGGACGCGCTGCGTCGCGCCTCCCGGCTGCTGC-TGCTGCTGCGGCGGCGGCGGCTGAGGCCGGTCCTCCCGACCCCGCGCCTTCCCCCGCCGAGGACGAGGCCGAGCGCGCCATGCTCGCCCAGGTTAGCAAGAGGCTAGAAAAAACAGCACAGTATTTCAAGACTTTGGGCACCCTGGGATTCTGGTCTCAGTTAGTGTGCACAACTGTCTCAGCAGGAATTTTGTCATTCTCGGCAGTCGCTACAGGGAATGCAACATCTCCCTTTACATTCTTTGCAACTTCAATTGGTATTGTTGCGGCATTTATTTCAGTCTTTTGGGCTTTTGGTTATATCCGTCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTCCTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGCCCTCACTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCGTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTCTTAAAATTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTA-TTACCTTTGTTTATTTCTGAGCATATTAGAAGTTTCTGTGAGAAGTGAGCAAGTTTCGTGATTCCTATGATGTGCGGTGCTGCTTCATTGCTGTTATGGAAATTGGAAAGAA]
[+] EMBL OS1169A [GCTGCCCCTCCTCGCCGGAGCAGAGAAACCTCTAGACCGCCTAAACCTACGCAAGGATGCAGGCGCTCCTGCTCTCCCCGGCGGCGGCGCCACGGCC NCCCTCCCCGCTCCGAGGCGGCCGTCTCTANCCCCTCGAGCCACCTCGATCCTCACGCCGGCGCCGCGCTCCCCCGCTCTCCGTGTGGTGGACGCCTTCGCCGCCGGCCGCTGGGGAGGACGCGCTGCGTCGCGCCTCCCGGCTGCTGC TGCTGCTGCGGCGGCGGCGGCTGAGGCCGGTCCTCCCGACCCCGCGCCTTCCCCCGCCGAGGACGAGGCCGAGCGCG CATGCTCGCCCAGGTTAGCAAGAGGCTAGAAAAAACAGCACAGTATTTAAAGACTTTGGG AACCTGGGATTCTGGTCTAAGTTAGTGTG ANAACTGTCTAAGAAGGAATTTTGTAATT TTGG ANTCG TANAGGGAATG AACATTT CNTTAAATTGTTgaaatt ]
[+] EMBL AU069981 [ TGCCCCTCCTCGCCGGAGCAGAGAAACCTCTAGACCGCCTAAACCTACGCAAGGATGCAGGCGCTCCTGCTCTCCCCGGCGGCGGCGCCACGGCCGCCCCTCCCCGCTCCGAGGCGGCCGTCTCTACCCCCTCGAGCCACCTCGATCCTCACGGCGGCGCCGCGCTCCCCCGCTCTCCGTGTGGTGGACGCCTTCGCCGCCGGCCGCTGGGGAGGACGCGCTGCGTCGCGCCTCCCGGCTGCTGCTTGCTGCTGCGGCGGCGGCGGCTGAGGCCGGTCCTNCCGACCCCGCGGCTTNCCCCGCCGAGGACG ]
[+] EMBL AK073270 [ AGAGAAACCTCTAGACCGCCTAAACCTACGCAAGGATGCAGGCGCTCCTGCTCTCCCCGGCGGCGGCGCCACGGCCGCCCCTCCCCGCTCCGAGGCGGCCGTCTCTACCCCCTCGAGCCACCTCGATCCTCACGCCGGCGCCGCGCTCCCCCGCTCTCCGTGTGGTGGACGCCTTCGCCGCCGGCCGCTGGGGAGGACGCGCTGCGTCGCGCCTCCCGGCTGCTGC TGCTGCTGCGGCGGCGGCGGCTGAGGCCGGTCCTCCCGACCCCGCGCCTTCCCCCGCCGAGGACGAGGCCGAGCGCGCCATGCTCGCCCAGGTTAGCAAGAGGCTAGAAAAAACAGCACAGTATTTCAAGACTTTGGGCACCCTGGGATTCTGGTCTCAGTTAGTGTGCACAACTGTCTCAGCAGGAATTTTGTCATTCTCGGCAGTCGCTACAGGGAATGCAACATCTCCCTTTACATTCTTTGCAACTTCAATTGGTATTGTTGCGGCATTTATTTCAGTCTTTTGGGCTTTTGGTTATATCCGTCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTCCTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGCCCTCACTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCGTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTCTTAAAATTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTA TTACCTTTGTTTATTTCTGAGCATATTAGAAGTTTCTGTGAGAAGTGAGCAAGTTTCGTGATTCCTATGATGTGCGGTGCTGCTTCATTGCTGTTATGGAAATTGGA ]
[+] EMBL BP184927 [ acgaggTCGCCGCCGGCCGCTGGGGAGGACGCGCTGCGTCGCGCCTCCCGGCTGCTGC TGCTGCTGCGGCGGCGGCGGCTGAGGCCGGTCCTCCCGACCCCGCGCCTTCCCCCGCCGAGGACGAGGCCGAGCGCGCCATGCTCGCCCAGGTTAGCAAGAGGCTAGAAAAAACAGCGCAGTATTTCAAGACTTTGGGCACCCTGGGATTCTGGTCTCAGTTAGTGTGCACAACTGTCTCAGCAGGAATTTTGTCATTCTCGGCAGTCGCTACAGGGAATGCAACATCTCCCTTTACATTCTTTGCAACTTCAATTGGTATTGTTGCGGCATTTATTTCAGTCTTTTGGGCTTTTGGTTATATCCGTCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTCCTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGCCCTCACTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCA ]
[+] EMBL CA767599 [ AACAGCACAGTATTTCAAGACTTTGGGCACCCTGGGATTCTGGTCTCAGTTAGTGTGCACAACTGTCTCAGCAGGAATTTTGTCATTCTCGGCAGTCGCTACAGGGAATGCAACATCTCCCTTTACATTCTTTGCAACTTCAATTGGTATTGTTGCGGCATTTATTTCAGTCTTTTGGGCTTTTGGTTATATCCGTCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTCCTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGCAGGGGCATTGGTAGCAAAAGCCCTCACTACATCTGCGGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACTAATGTTCCTCCGTTCTTTCTTTGGNTGGATTTTTCTCTGCAATTGCTTTGGGGTTTCTTAAAAATTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGNTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGGCTTTCTTACTAACCTTTGGTTATTTCTGAGCATATTANAAGn ]
[+] EMBL AK063888 [ TGGTATTGTTGCGGCATTTATTTCAGTCTTTTGGGCTTTTGGTTATATCCGTCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTCCTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGCCCTCACTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCGTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTCTTAAAATTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTA TTACCTTTGTTTATTTCTGAGCATATTAGAAGTTTCTGTGAGAAGTGAGCAAGTTTCGTGATTCCTATGATGTGCGGTGCTGCTTCATTGCTGTTATGGAAATTGGAAA ]
[+] EMBL CB096779 [ GGTTATATCCGCCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTCCTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGCCCTCACTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAGAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCGTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTCTTAAAATTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTA CTACCTTTGTTTATTTCTGAGCATATTAGAAGNTTCTGTGAGAAGTGAGCAAGTTTCGTGATTCCTATGATGTGCGGTGCTGCTTCATTGCTGGTATGGAAATTGGAAAGAA]
consensusID : consensus_11496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 427 fasta sequence
[ACTAGATACCTCCTAAGGGAA-AAGC-TGCTACATC-GCAG-GCGTACTACCA-GGAATATCTC--GGCCAGAGCCCG-TCTATCTTTAGATGTTTTCCTGNTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTTTTTTTTTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTACTACCTTTGTTTATTTCTGAGCATATTA]
[+] EMBL CB966995 [ACTAGATACCTCCTAAGGGAA AAGC TGCTACATC GCAG GCGTACTACCA GGAATATCTC GGCCAGAGCCCG TCTATCTTTAGATGTTTTCCTGNTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTTTTTTTTTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTACTACCTTTGTTTATTTCTGAGCATATTA]
[+] EMBL CB966986 [ GGAATAAGCTTGCTACATCTGCAGTGCGTACTACCAGGGAATATCTCCTGGCCAGAGCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCTTCTTTCTTTGGTTGTATTTTTCTCTGCAATCGCTTTGTGTTTTTTTTTTTTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTACTACCTTTGTTTATTTCTGAGCATATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11496#0 GCTGCCCCTCCTCGCCGGAGCAGAGAAACCTCTAGACCGCCTAAACCTACGCAAGGATGC 60
consensus_11496#1 ------------------------------------------------------------
consensus_11496#0 AGGCGCTCCTGCTCTCCCCGGCGGCGGCGCCACGGCCGCCCCTCCCCGCTCCGAGGCGGC 120
consensus_11496#1 ------------------------------------------------------------
consensus_11496#0 CGTCTCTACCCCCTCGAGCCACCTCGATCCTCACGCCGGCGCCGCGCTCCCCCGCTCTCC 180
consensus_11496#1 ------------------------------------------------------------
consensus_11496#0 GTGTGGTGGACGCCTTCGCCGCCGGCCGCTGGGGAGGACGCGCTGCGTCGCGCCTCCCGG 240
consensus_11496#1 ------------------------------------------------------------
consensus_11496#0 CTGCTGCTGCTGCTGCGGCGGCGGCGGCTGAGGCCGGTCCTCCCGACCCCGCGCCTTCCC 300
consensus_11496#1 ------------------------------------------------------------
consensus_11496#0 CCGCCGAGGACGAGGCCGAGCGCGCCATGCTCGCCCAGGTTAGCAAGAGGCTAGAAAAAA 360
consensus_11496#1 ------------------------------------------------------------
consensus_11496#0 CAGCACAGTATTTCAAGACTTTGGGCACCCTGGGATTCTGGTCTCAGTTAGTGTGCACAA 420
consensus_11496#1 ------------------------------------------------------------
consensus_11496#0 CTGTCTCAGCAGGAATTTTGTCATTCTCGGCAGTCGCTACAGGGAATGCAACATCTCCCT 480
consensus_11496#1 ------------------------------------------------------------
consensus_11496#0 TTACATTCTTTGCAACTTCAATTGGTATTGTTGCGGCATTTATTTCAGTCTTTTGGGCTT 540
consensus_11496#1 ------------------------------------------------------------
consensus_11496#0 TTGGTTATATCCGTCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTC 600
consensus_11496#1 ------------------------------------------------------------
consensus_11496#0 CTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAA 660
consensus_11496#1 ------------------------------------------------------------
consensus_11496#0 TGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGCCCTCA 720
consensus_11496#1 -------------------------------ACTAGATACCTCCTAAGGGAAAAGCT--G 27
*** * * ** *** *
consensus_11496#0 CTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTT 780
consensus_11496#1 CTACATC-GCAG--GCGTACTACCAGG-AATATCTC--GGCCAGAGCCCG--TCTATCTT 79
******* **** ************ ******** *********** ********
consensus_11496#0 TAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTAT 840
consensus_11496#1 TAGATGTTTTCCTGNTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTAT 139
************* *********************************************
consensus_11496#0 CGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCC 900
consensus_11496#1 CGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCC 199
************************************************************
consensus_11496#0 CTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCGTTC 960
consensus_11496#1 CTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCC-TTC 258
******************************************************** ***
consensus_11496#0 TTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTCTTAAAATTTTCTTTTAGT 1020
consensus_11496#1 TTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTTTTTTT-TTTTCTTTTAGT 317
***************************************** ** ************
consensus_11496#0 GATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCAT 1080
consensus_11496#1 GATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCAT 377
************************************************************
consensus_11496#0 TCAAATCTGCTCGTCTTTCTTATTACCTTTGTTTATTTCTGAGCATATTAGAAGTTTCTG 1140
consensus_11496#1 TCAAATCTGCTCGTCTTTCTTACTACCTTTGTTTATTTCTGAGCATATTA---------- 427
********************** ***************************
consensus_11496#0 TGAGAAGTGAGCAAGTTTCGTGATTCCTATGATGTGCGGTGCTGCTTCATTGCTGTTATG 1200
consensus_11496#1 ------------------------------------------------------------
consensus_11496#0 GAAATTGGAAAGAA 1214
consensus_11496#1 --------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||