These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1433 fasta sequence [TAGGCGACGCCACACCTCTTGCATTTGTCTTTTTGGCGATTCCTTCGATCCTTACTTGATATAAACCAACCGAGCTGCCCGCCTGGTTCTTGCATTGCATGAGAAACGCCTAGAGATCTTCTAGCTAGCTCCACAAGATGATGAGTTAGACGACCTGGATTCGAAAGCTCACCCCTTCTATTTATTTGATATTAGATCATTCCCTAATATTTGCCCTTTTTTTTTCTTGCATTGCATGATTGAATGTCCAAGGTTGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA-GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG-AGCTTGTGGATCGTGCCCAAGCTCGC-TGATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCTGTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAGGTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTCATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACTGTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAATTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAACACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTGTTTCTTGGTGGAATTCTGGAGTTATTTTAACCCATCGTAAACAACAGCACACGTTGACTTAAAAATAACTTGCCTTTTCTCTTTTTAATTTTGGGCAGCTCTGCCAAAGAGTGCAAATTAGAAAAACGTAAACTTTTGTGTATCAAAGGATTTTTTGAAGCATGGAAAACCCGGGGGAACAGATGTTTATCAAAATTTACAGGAACTTTTGAGTTTTTTGACTTAGAGATTCGTTTTGTGTACAGAAAGGCATGTCGCCAATGTAATTTTGTGTGAATGGCTTTGTGCTGTGCAATTTTGGGAAGAAATTAAAGCATAAAAAGAAATGGGGGGGTATTCCAGGTTTCTCCCTGCCCAT] [+] EMBL CB629842 [TAGGCGACGCCACACCTCTTGCATTTGTCTTTTTGGCGATTCCTTCGATCCTTACTTGATATAAACCAACCGAGCTGCCCGCCTGGTTCTTGCATTGCATGAGAAACGCCTAGAGATCTTCTAGCTAGCTCCACAAGATGATGAGTTAGACGACCTGGATTCGAAAGCTCACCCCTTCTATTTATTTGATATTAGATCATTCCCTAATATTTGCCCTTTTTTTTTCTTGCATTGCATGATTGAATGTCCAAGGTTGCGGCCTATGCTCGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCC ATCACCAGCGACCACCGCTAGGTGaggctgttg ] [+] EMBL AK071874 [ TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG AGCTTGTGGATCGTGCCCAAGCTCGC TGATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCTGTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAGGTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTCATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACTGTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAATTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAACACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTG ] [+] EMBL AU172472 [ TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGNTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGAGGGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG AGCTTGTGGATCGTG ] [+] EMBL AB096013 [ TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG AGCTTGTGGATCGTGCCCAAGCTCGC TGATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCTGTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAGGTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTCATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACTGTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAATT ] [+] EMBL AU172662 [ TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGGAAGCTTGTGGATCGTGCCCAAGCTCGCTTGATCACGATCAAGAAGGGCA ] [+] EMBL AU182561 [ TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGNTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG AGCTTGTGGATCGTGCCCAAGCTC ] [+] EMBL AU172473 [ GGTGGTGGCCTCCAGTTTCTCATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACTGTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAATTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAACACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTGTTTCTTGGTGGAATTCTGGAGTTATTTTAACCCATCGTAAACAACAGCACACGTTGACTTAAAAA ] [-] EMBL CB629841 [ TCCATCCATCCAAATCGTCCAATTATTGTCATAGTGTGAAGAATATTTGTGTGCCACCCCTTTCAAGCAGCACATTTGCAACCCTGTACAGAAAATTGAGGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGAGTTGCCCATCTTTAGTCAGCATTCAGCCCAGGGATCAGATATATCATATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTTTTGAAAGAAAGATGGAAAAGTGTGTTTTTTGGTGGAATTTGGGAGTTATTTTAACCCATCGTAAACAACAGCCCACGTTGACTTAAATTTAACTTGCCTTTTCTCTTTTTAATTTTGGGCAGCTCTGCCAAAGAGTGCAAATTAGAAAAACGTAAACTTTTGTGTATCAAAGGATTTTTTGAAGCATGGAAAACCCGGGGGAACAGATGTTTATCAAAATTTACAGGAACTTTTGAGTTTTTTGACTTAGAGATTCGTTTTGTGTACAGAAAGGCATGTCGCCAATGTAATTTTGTGTGAATGGCTTTGTGCTGTGCAATTTTGGGAAGAAATTAAAGCATAAAAAGAAATGGGGGGGTATTCCAGGTTTCTCCCTGCCCAT] consensusID : consensus_11503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence [GTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCANAAGCCTCACNAANAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCANATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAANAAANATGGAAAAGTGTGTTTCTTGGTGGAATTCTGGAGTTATTTTAACCCATCGTNAACNAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU182562 [GTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCANAAGCCTCACNAANAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCANATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAANAAANATGGAAAAGTGTGTTTCTTGGTGGAATTCTGGAGTTATTTTAACCCATCGTNAACNAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11503#0 TAGGCGACGCCACACCTCTTGCATTTGTCTTTTTGGCGATTCCTTCGATCCTTACTTGAT 60 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 ATAAACCAACCGAGCTGCCCGCCTGGTTCTTGCATTGCATGAGAAACGCCTAGAGATCTT 120 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 CTAGCTAGCTCCACAAGATGATGAGTTAGACGACCTGGATTCGAAAGCTCACCCCTTCTA 180 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 TTTATTTGATATTAGATCATTCCCTAATATTTGCCCTTTTTTTTTCTTGCATTGCATGAT 240 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 TGAATGTCCAAGGTTGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCG 300 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 ACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCC 360 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 GGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTT 420 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 CTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGAGGGGATGTTGCCCTTCATGAAATT 480 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 GCCGGGAATGTGGTGAGGCTGAAGCTTCAAGGAGCTTGTGGATCGTGCCCAAGCTCGCTG 540 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 ATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCT 600 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 GTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAG 660 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 GTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTC 720 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 ATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACT 780 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 GTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAA 840 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 TTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAAC 900 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 ACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGA 960 consensus_11503#1 ---GTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCANAAGCCTCACNAANA 57 ****************************************** ********* ** * consensus_11503#0 GTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCT 1020 consensus_11503#1 GTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCANATACTATCTGTCT 117 ********************************************** ************* consensus_11503#0 AGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTGTTTCT 1080 consensus_11503#1 AGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAANAAANATGGAAAAGTGTGTTTCT 177 ************************************* *** ****************** consensus_11503#0 TGGTGGAATTCTGGAGTTATTTTAACCCATCGTAAACAACAGCACACGTTGACTTAAAAA 1140 consensus_11503#1 TGGTGGAATTCTGGAGTTATTTTAACCCATCGTNAACNAAAAAAAAAAAAAAAAAAAA-- 235 ********************************* *** * * * * * *** consensus_11503#0 TAACTTGCCTTTTCTCTTTTTAATTTTGGGCAGCTCTGCCAAAGAGTGCAAATTAGAAAA 1200 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 ACGTAAACTTTTGTGTATCAAAGGATTTTTTGAAGCATGGAAAACCCGGGGGAACAGATG 1260 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 TTTATCAAAATTTACAGGAACTTTTGAGTTTTTTGACTTAGAGATTCGTTTTGTGTACAG 1320 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 AAAGGCATGTCGCCAATGTAATTTTGTGTGAATGGCTTTGTGCTGTGCAATTTTGGGAAG 1380 consensus_11503#1 ------------------------------------------------------------ consensus_11503#0 AAATTAAAGCATAAAAAGAAATGGGGGGGTATTCCAGGTTTCTCCCTGCCCAT 1433 consensus_11503#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||