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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 822 fasta sequence
[CTCGCCGCATCCTCGACCGGACCGGGTTAACGCATCCTCCTCCCCACTTCGACGGCGCGCCGGCGGCGATGGCGTCGCGGAAGCTCGTCCTCGGCCTCACGGCGGCAAGGCGGTTGAGGTCTCGCGCTCCCGTCCTCGTCTCGTCCTCTCCCTTCCTGGAAGCCTCCACATCGACTTCTGACGCCACCGCCGCCACCGCGACGCGGGGTTCGGGGTTGGGGCCGTGGGGGCTGTTCCTATCTTCGAGGGCCCTCTCGTCGACTCGTCCGGTGTCTCTGTCCGCCGGTGATGCGCCTGGCTCGTCCGCTGCGGACCATAGGTCGATACTACCAGAGGATGAGTATCACAAATTAGCAGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTGTGAGTGGGCCTTCTAGGTTCGATTGGGATGCACCAACANATTGTTGGATATACAGGCGGACAGGAGCTAATCTTGTTGAACTTCTGGAGAAAGAGATTGGTGAGCTCTGGGGGACCCCCATAGAACTTTCATAAC-ATGAAAGGAAAAATCCCCCGGAACTTAGTTGGGAGGTGCATATGACAAAT-GGGTCAATGTATGGTTAAAT-AAGGGGACCCCTGGGTTTGGGTTAGGTCCTTTTGGGAGGG-AACCAAAAATTTTGGTTGGTCTTAGAACACCGTCCGAATCCCTGGG]
[+] EMBL CF333520 [CTCGCCGCATCCTCGACCGGACCGGGTTAACGCATCCTCCTCCCCACTTCGACGGCGCGCCGGCGGCGATGGCGTCGCGGAAGCTCGTCCTCGGCCTCACGGCGGCAAGGCGGTTGAGGTCTCGCGCTCCCGTCCTCGTCTCGTCCTCTCCCTTCCTGGAAGCCTCCACATCGACTTCTGACGCCACCGCCGCCACCGCGACGCGGGGTTCGGGGTTGGGGCCGTGGGGGCTGTTCCTATCTTCGAGGGCCCTCTCGTCGACTCGTCCGGTGTCTCTGTCCGCCGGTGATGCGCCTGGCTCGTCCGCTGCGGACCACAGGTCGATACTACCAGAGGATGAGTATCACAAATTAGCAGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTGTGAG ]
[+] EMBL BE040591 [ ACCGGGTTAACGCATCCTCCTCCCCACTTCGACGGCGCGCCGGCGGCGATGGCGTCGCGGAAGCTCGTCCTCGGCCTCACGGCGGCAAGGCGGTTGAGGTCTCGCGCTCCCGTCCTCGTCTCGTCCTCTCCCTTCCTGGAAGCCTCCACATCGACTTCTGACGCCACCGCCGCCACCGCGACGCGGGGTTCGGGGTTGGGGCCGTGGGGGCTGTTCCTATCTTCGAGGGCCCTCTCGTCGACTCGTCCGGTGTCTCTGTCCGCCGGTGATGCGCCTGGCTCGTCCGCTGCGGACCATAGGTCGATACTACCAGAGGATGAGTATCACAAATTAGCAGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTGTGAGTGGGCCTTCTAGGTTCGATTGGGATGCACCAACANATTGTTGGATATACAGGCGGACAGGAGCTAATCTTGTTGAACTTCTGGAGAAAGAGATTGGTGAGCTCTGGGGGACCCCCATAGAACTTTCATAAC ATGAAAGGAAAAATCCCCCGGAACTTAGTTGGGAGGTGCATATGACAAAT GGGTCAATGTATGGTTAAAT AAGGGGACCCCTGGGTTTGGGTTAGGTCCTTTTGGGAGGG AACCAAAAATTTTGGTTGGTCTTAGAACACCGTCCGAATCCCTGGG]
[+] EMBL BE040598 [ ACCGGGTTAACGCATCCTCCTCCCCACTTCGACGGCGCGCCGGCGGCGATGGCGTCGCGGAAGCTCGTCCTCGGCCTCACGGCGGCAAGGCGGTTGAGGTCTCGCGCTCCCGTCCTCGTCTCGTCCTCTCCCTTCCTGGAAGCCTCCACATCGACTTCTGACGCCACCGCCGCCACCGCGACGCGGGGTTCGGGGTTGGGGCCGTGGGGGCTGTTCCTATCTTCGAGGGCCCTCTCGTCGACTCGTCCGGTGTCTCTGTCCGCCGGTGATGCGCCTGGCTCGTCCGCTGCGGACCATAGGTCGATACTACCAGAGGATGAGTATCACAAATTAGCAGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTGTGAGTGGGCCTTCTAGGTTCGATTGGGATGCACCAACAAATTGTTGGATATACAGGCGGACAGGAGCTAATCTTGGTGAACTTCTGGAGAAAGAGATTGGTGAGCTTTGTGGGACCCCAGTAGAAACTTCATAACAATG AAGGGAAAATACCACGGAACTAAGTTGGATGGTGCATATGACAAATGGGGTCAATGTATGTTAAAATCAAGGTGACGCCTTGGTAT GGTTAGGTTCTTTT GAAGGGAAACCCAAAATTTTTGTT GTCCTAGGACACCGTCCGAAcca ]
consensusID : consensus_11513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[ACCACAGGTCGATACTACCAGAGGATGAGTATCACAAATTAGCAGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTGTGAGTGGGCCTTCTAGGTTCGATTGGGATGCACCAACAAATTGTTGGATATACAGGCGGACAGGAGCTAATCTTGTTGAACTTCTGGAGAAAGAGATTGGTGAGCTCTGTGGTACCCCAGTAGAACTTTCATAACAATGAAGGGAAAATACCACGGAACTAAGTTGGATGGTGCATATGACAAATGTGTCAATGTATGTTAAATCAGGTGACGCTTGGTATGGTTAGTTCTTTTGATGGAACCAAAATTTTGTTGTACTAGACACGTCCGATCACTGCTTGGAAGTTGGAATAAATACCTGTCCTCAATAACCAGCACACAATATATACCTTAGTTCTGAATAAGCCGTTGTGGGTGTAGTGATTTGCATGTCAAAATGTGAATACTGGGAGTAAAAAA]
[-] EMBL CF333519 [ACCACAGGTCGATACTACCAGAGGATGAGTATCACAAATTAGCAGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTGTGAGTGGGCCTTCTAGGTTCGATTGGGATGCACCAACAAATTGTTGGATATACAGGCGGACAGGAGCTAATCTTGTTGAACTTCTGGAGAAAGAGATTGGTGAGCTCTGTGGTACCCCAGTAGAACTTTCATAACAATGAAGGGAAAATACCACGGAACTAAGTTGGATGGTGCATATGACAAATGTGTCAATGTATGTTAAATCAGGTGACGCTTGGTATGGTTAGTTCTTTTGATGGAACCAAAATTTTGTTGTACTAGACACGTCCGATCACTGCTTGGAAGTTGGAATAAATACCTGTCCTCAATAACCAGCACACAATATATACCTTAGTTCTGAATAAGCCGTTGTGGGTGTAGTGATTTGCATGTCAAAATGTGAATACTGGGAGTAAAAAA]
consensusID : consensus_11513#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 618 fasta sequence
[TCCATCCAATCCAAGCACCCGGTTGAGCTGCCGTTTTCTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACAAGGGCACCGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGTGGAGGGGCTGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCACCTTCCGGAGCCTGAAGAGGAACGCGGCGATGCTAGGGCTCGGCGAGCTCCGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGACGGCGCGCTGGACCAGATGGAGTTCTGCGTCCTCATGGTC-AGACTCAGCCCCGAGC-TGATGC-AGGATGAGTCGCAT-AGGGCGTTCCAG-TGTTGACATAATCTGA-TCGGTGCTTGTT-AGCTAGTGGAATGCAACATTATAATACAGTGAGCGTTTTGAGGATTTGTCGATAGTGTGATTATGCATTTTATTTCCCCTAACGAAGCATAACAGCCTGACAACTCATGCTACTCCCAGTATTCACATTTTGACATGCAAATCACTACACCCACAACGGCTTAAAAAAAAAAAAAAAAA]
[+] EMBL AK109278 [TCCATCCAATCCAAGCACCCGGTTGAGCTGCCGTTTTCTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACAAGGGCACCGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGTGGAGGGGCTGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCACCTTCCGGAGCCTGAAGAGGAACGCGGCGATGCTAGGGCTCGGCGAGCTCCGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGACGGCGCGCTGGACCAGATGGAGTTCTGCGTCCTCATGGTC AGACTCAGCCCCGAGC TGATGC AGGATGAGTCGCAT AGGGCGTTCCAG TGTTGACATAATCTGA TCGGTGCTTGTT AGCTAGTGGAATGCAACATTATAATACAGTGAGCGTTTTGAGGATTTGTCGATAGTGTGATTATGCATTTTATTTCCCCTAACGAAGCATA ]
[+] EMBL C29141 [ ACCCGGTTGAGCTGCCGTTTTCTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACAAGGGCACCGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGTGGAGGGGCTGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCACCTTCCGGAGCCTGAAGAGGAACGCGGCGATGCTAGGGCTCGGCGAGCTCCGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGACGGCGCGCTGGACCAGATGGAGTTCTNCGTCCTCATGGTCAAGACTTAGCCCCGAGCTTAATGCAAGGATGAATCGCATAAGGGGGTTNCAGTTTTTGACATAATCTNATTCGGTGCTTTTTAAGCTAattg ]
[+] EMBL AU165292 [ CCCGGTTGAGCTGCCGTTTTCTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACAAGGGCACCGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGTGGAGGGGCTGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCACCTTCCGGAGCCTGAAGAGGAACGCGGCGATGCTAGGGCTCGGCGAGCTCCGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGACGGCGCGCTGGACCAGATGGAGTTCTGCGTCCTCATGGTC AGACTCAGCCCCGAGC TGATGC AGGATGAGTCGCAT AGGGCGTTCCAG TGTTGACATAATCTGA TCGGTGCTTGTT AGCTAGTGGAATGCAACATTATAATACAGTGAGCGTTTTGAGGATTTGTCGATAGTGTGATTATGCATTTTATTTCCCCTAAaaaaa ]
[+] EMBL AU091313 [ GGTTGAGCTGCCGTTTTCTGTAATCTCCNTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACAAGGGCACCGGCGTNCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCNTGGAGGGGCTGATCGAGGAGCTNTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCACCTTCCGGAGCCTGAAGAGGAACGCGGCGATGCTAGGGCTCGGCGAGCTCCGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGACGGCGCGCTGGACCAGATGGAGTTCTGCGTCCTCATGGTC AGACTCAGCCCCGAGC TGATGC AGGATGAGTCGCAT AGGGCGTTCCAG TGTTGACATAATCTGA TCGGTGCTTGTT AGCTAGTGGAATGCAACATTATAATACAGTGAGCGTTTTGAGGATTTGTCGATAGTGTGATTATGCATTTTATTTCCCCTAACGAAGCATAACAGCCTGACAACTCATGCTACTCCCAGTATTCACATTTTGACATGCAAATCACTACACCCACAACGGCTTAAAAAAAAAAAAAAAAA]
[+] EMBL C74086 [ GTTGAGCTGCCGTTTTCTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACAAGGGCACCGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGTGGAGGGGCTGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCANCTTCCGGAGCCTGAAGAGGAACGCGGCGATGCTAGGGCTCGGCGANCTCCGGGACGACGANCTGTCGGAGATGATGAGGGAAGGGG CCTCGACGGGGACGGCGCGCTTGACCAa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11513#0 CTCGCCGCATCCTCGACCGGACCGGGTTAACGCATCCTCCTCCCCACTTCGACGGCGCGC 60
consensus_11513#1 ------------------------------------------------------------
consensus_11513#2 ------------------------------------------------------------
consensus_11513#0 CGGCGGCGATGGCGTCGCGGAAGCTCGTCCTCGGCCTCACGGCGGCAAGGCGGTTGAGGT 120
consensus_11513#1 ------------------------------------------------------------
consensus_11513#2 ------------------------------------------------------------
consensus_11513#0 CTCGCGCTCCCGTCCTCGTCTCGTCCTCTCCCTTCCTGGAAGCCTCCACATCGACTTCTG 180
consensus_11513#1 ------------------------------------------------------------
consensus_11513#2 ------------------------------------------------------------
consensus_11513#0 ACGCCACCGCCGCCACCGCGACGCGGGGTTCGGGGTTGGGGCCGTGGGGGCTGTTCCTAT 240
consensus_11513#1 ------------------------------------------------------------
consensus_11513#2 -----------------------TCCATCCAATCCAAGCACCCGGTTGAGCTGCCGTTTT 37
consensus_11513#0 CTTCGAGGGCCCTCTCGTCGACTCGTCCGGTGTCTCTGTCCGCCGGTGATGCGCCTGGCT 300
consensus_11513#1 ------------------------------------------------------------
consensus_11513#2 CTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACA 97
consensus_11513#0 CGTCCGCTGCGGACCATAGGTCGAT-ACTACCAGAGGATGAGTATCACAAATTAG----C 355
consensus_11513#1 ------------ACCACAGGTCGAT-ACTACCAGAGGATGAGTATCACAAATTAG----C 43
consensus_11513#2 AGGGCAC--CGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGT 155
** **** *** ** * * ** * ** *
consensus_11513#0 AGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCT--CTTCAG 413
consensus_11513#1 AGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCT--CTTCAG 101
consensus_11513#2 GGAGGGGCTGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGG 215
** * * ** * ** ** * * *** *** * * * *
consensus_11513#0 ATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTT- 472
consensus_11513#1 ATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTT- 160
consensus_11513#2 CAAGATCACCTTC-CGGAGCCTG-AAGAGGAACGCGGCGATGCTAGGGCTCGGCGAGCTC 273
*** * ** * ** ** ** * * * *** ** * ** *** *
consensus_11513#0 -GGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTG 531
consensus_11513#1 -GGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTG 219
consensus_11513#2 CGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGACGGCGCGCTG 333
*** * * *** * * * ** *** ** * ***
consensus_11513#0 TG--AGTGGGCCTTCTAGGTTCGATTGG---GATGCACCAACANATTGTTGGATATACAG 586
consensus_11513#1 TG--AGTGGGCCTTCTAGGTTCGATTGG---GATGCACCAACAAATTGTTGGATATACAG 274
consensus_11513#2 GACCAGATGGAGTTCTGCGTCCTCATGGTCAGACTCAGCCCCGAGCTGATGCAGGATGAG 393
** ** **** ** * *** ** ** * * ** ** * **
consensus_11513#0 GCGGACAGGAGCTAATCTTGTTGAACTTCTGGAGAAAGAGATTGGTGAGCTCTGGGGGAC 646
consensus_11513#1 GCGGACAGGAGCTAATCTTGTTGAACTTCTGGAGAAAGAGATTGGTGAGCTCTGTGGTAC 334
consensus_11513#2 TCGCATAGGGCGTTCCAGTGTTGACATAATCTGATCGGTGCTTGTTAGCTAGTGGAATGC 453
** * *** * ****** * * * * *** * ** *
consensus_11513#0 CCCCATAGAACTTTCATAACATGAAAGGAAAAATCCCCCGG---AACTTAGTTGGGAGGT 703
consensus_11513#1 CCCAGTAGAACTTTCATAACAATGAAGGGAAAATACCACGG---AACTAAGTTGGATGGT 391
consensus_11513#2 AACATTATAATACAGTGAGCGTTTTGAGGATTTGTCGATAGTGTGATTATGCATTTTATT 513
* ** ** * * * * * * * * * *
consensus_11513#0 GCATATGACAAATGGGTCAATGTATGGTTAAATAAGGGGACCCCTGGGTTTGGGTTAGGT 763
consensus_11513#1 GCATATGACAAATGTGTCAATGTATG-TTAAATCAGGTGACGCTTGGTAT--GGTTAGTT 448
consensus_11513#2 TCCCCTAACGAA-GCATAACAGCCTG-ACAACTCATGCTACTCCCAGTAT----TCACAT 567
* * ** ** * * * * ** ** * * * ** * * * * * *
consensus_11513#0 CCTTTTGGGAGGGAACCAAAAATTTTGGTTGGTCTTAGAACACCGTCCGAATCCCTGGG- 822
consensus_11513#1 CTTTT---GATGGAACCAAAA--TTTTGTTGTACTAGACACGTCCGATCACTGCTTGGAA 503
consensus_11513#2 --TTTGACATGCAAATCACTACACCCACAACGGCTTAAAAAAAAAAAAAAAAA------- 618
*** ** ** * ** * *
consensus_11513#0 ------------------------------------------------------------
consensus_11513#1 GTTGGAATAAATACCTGTCCTCAATAACCAGCACACAATATATACCTTAGTTCTGAATAA 563
consensus_11513#2 ------------------------------------------------------------
consensus_11513#0 -------------------------------------------------------
consensus_11513#1 GCCGTTGTGGGTGTAGTGATTTGCATGTCAAAATGTGAATACTGGGAGTAAAAAA 618
consensus_11513#2 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||