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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 3792 fasta sequence
[CCTTGGCATCTGATCCTATTCCCCTCTCCGCGCACGTCGGGTTTCCCCCCCGTGGACAACGCAACCGACCGACCAAGCTGCGGACAGCGCCGTCTCTGCTGTCTCTCTCTGTATGCTTCCCTTCCTCCTCAAGCTGGGCCTCGGTGGTCGGTGGTTAGGTGAAGGTAAACCACCGGCTTTCTCACGCGCCTTTCTTTCTGTTCATTTCCTTGGGGTTTAATTCTTGGTTGCCAGCGAGCCCGGTAGGCAGTAGTCCACCCACCGGCAGGTTCTTGCTCCTCCTCCTCAGCCGCTGCCGGATTTGAGATGAGATGAGATGAGGAGGCGCTGGGGGTGCCTCTCCTCCCTGTGCCGCCCTCGCCGGGGTGGACGCGCGGCGGCGGCCCCGCTCCCGCAGCCAGATCCACCGCGTCTCGAGTCCAAGGAAGTAGAGGAGCACGGCGCTTCCGATAAAGTTGTCATGGAGAACATTCTGTCAAACAATGATTTTTCGGAAGGTCTACATTTGTGGCATCCTAATGGTTGCCATGGATTTGTGGCTGTTGAAGGATCAGGTTATCATCATGGAATAAGGCCTCACTCAGGGTCAAATTATGCCGTACTTACTCGTCGCACACATAATTGGCAAGGGCTTGAGCAGGACATAACAGAAAAGGTCACTGTTGGTACTGAGTACATTGTTGCTGCCCATGTCAGAGTCCATGGTGAACTCAATGAGCCTGTTGGAATTCAGGCCACTCTAAAACTTGAGGGCGATGGTTCTTCTACGAACTATCAATCAGTTGCAAGGATCTCAGCATCAAAAGACTGTTGGGAGAAGTTGGAAGGTTCATTTGAACTAAAAACTCTACCAAGACGTTTGGTATTCTACATTGAAGGCCCCCCTCCTGGTGTAGACTTGCTCATAGATTCAGTCACCATCTCCTACAAGAAAACAGAGCGGGCTGCATCCAAACTGGTTAGTGGAACAGAAAACATCATTTCAAATTATGATTTTTCGGAAGGCCTTCATTTGTGGAACCCTATCTGCTGTCATGCATATGTGGCATCTCAATGGTCTGGTTTCCTTGATGGTATTAGAGGGAGCTCAGGAGAAAATTATGCTGTAGTTTCGAAGAGAACTGAAAGCTGGCAAGGTCTTGAACAAGATATTACAGATAAAGTATCTGCTGGTACTGCTTATGCAGTATCAGCCTATGTTAGAGTTGATGGGAATATCCATACGAAAGTTGAAGTTAAAGCAACCTTGAGGTTGCATAACACAGATGATTCAACGCACTACAGTCCAGTTGGAAGCCTGTTAGCTTCAAAAGAAAAGTGGGAGAAGATGGAAGGATCCTTTTGCTTGACAAATATGCCAAAACGTGTAGTATTCTACCTGGAAGGACCTCCTGCTGGCGTGGACCTTATCATTGATTCCGTAAATGTAACTTGCTCTGGATATCAGCAGTTAAAAGAAGTAAAAGTACCAAGTGGAGTTGATACCATCGTTAAGAATCCTCACTTTGACGAAGGGTTAAACAATTGGTCTGGAAGAGGATGCAATATCTGTAGGCATGAGCTTACTGCTTATGGAAATGTCAAGCCTCTAAATGGCAGCTATTTTGCTTCAGCCACTGGACGGGTCCACAATTGGAACGGTATCCAGCAAGATATCACTGGCAGGGTACAGAGAAAAGTTCTTTATGAGATAAGTTCTGCTGTCCGCATATTTGGGAGTGCCAATGATACAGAAGTCTGCGTTACTCTGTGGGTACAAGAATATGGCCGTGAGCGATATGTAAGCCTTGCAAAGAACCCGGCATCTGATAAGCAATGGACACATCTAAAAGGAAAGTTCCTCCTCCATGCCCCG-TTTTC-AAAAGCTGTTA-TTTTCGTAGAGGGGCCACCTGCAGGCATTGATATTCTTGTTGATGGCCTTGTCCTATCTCCAGCAAGAAAACTCCATGCTGCACCCCGCCCAAGAATTGAGAATGTTTCATATGGAGCTAATGTAATACATAACAGTGCTTTCAGTCATGGGCTTTCTGGGTGGAGTCCCATGGGGTCATGTCGATTGAGTATCCATACTGAATCACCCCATATGCTTTCTGCCATCTTGAAGGACCCCTCAGCTAAGCAACATATAAGAGGTTCTTATATTCTTGCCACAAACCGCACTGATGTGTGGATGGGCCCTTCCCAGTTGATAACTGACAAGCTTAGGCTGCACACCACTTACAGAGTTTCTGCTTGGGTACGTGCTGGGTCTGGAGGACATGGACGTTACCATGTAAATGTTTGTCTTGCTGTAGATCATCAGTGGGTTAATGGTGGGCAAGTAGAAGCTGATGGCGATCAATGGTATGAACTCAAAGGAGCATTCAAGCTTGAAAAGAAGCCATCCAAAGTTACTGCATATGTTCAGGGACCGCCTCCAGGTGTTGATCTCAGAGTTATGGGGTTCCAAATTTATGCTGTTGATAGAAAAGCACGTTTTGAATATCTGAAGGAGAAAACTGACAAGGTAAGGAAGCGTGATGTCATCCTGAAGTTCCAGGGATCAGATGCTGCAAACCTTTTTGGTTCATCTATCAAGATACAACAGACCGAGAACAGTTTTCCATTTGGATCATGCATAGGGAGAAGTAACATTGAGAATGAGGATCTTGCTGATTTCTTCATGAA-GAACTTTAATTGGGCTGTATTTGAAAATGAACTGAAGTGGTACTGGACAGAGGCTGAACAAGGGAGACTAAATTATAAAGATTCTGATGAGTTGCTTGAATTTTGCCGGAAACATAACATTCAAGTTCGTGGTCACTGCTTATTCTGGGAAGTAGAAGATTCAGTCCAGCCATGGATTCGATCATTACATGGTCACCACCTGATGGCTGCTATACAGAATCGTTTGCAAAGTCTGTTGTCAAGGTACAAAGGTCAGTTTAAACATCATGATGTAAACAACGAGATGCTTCATGGGTCTTTCTACCAAGATAGACTGGGAAATGATATTAGAGCTCACATGTTTAGGGAAGCACATAAACTTGACCCTTCAGCAGTACTCTTTGTGAACGACTACAATGTTGAAGATCGATGCGACTCAAAATCTACACCAGAAAAATTAATTGAACAGATTGTTGATCTCCAAGAAAGGGGTGCTCCAGTTGGTGGGATTGGCTTGCAAGGTCATATCACGCATCCAGTGGGTGACATCATCTGCGATTCCCTGGACAAGCTCTCCATACTGGGTCTCCCTATCTGGATCACCGAATTGGATGTCACGGCTGAGAATGAACACATCCGAGCCGATGATCTGGAGGTGTACCTTCGCGAAGCCTTTGCGCATCCTTCCGTGGAGGGGATTATCCTTTGGGGATTCTGGGAGCTGTTCATGTTCCGAGAACACGCTCACCTGGTTGATGTTGATGGAACGAT--CAA-TG-AGGC-TGGCAAAAG-G-TA-CA-TTGC--AC-TG-AAGC--AAGAG-TGGCTAA--CCAGCATTAC-TGGC-AACGTGGATCACCATGGAGA-GTTGAA-G-TTCAGAGGCTA-CCATGGGTCATACACGGTAGAAGTAGCAACGCCTTCAGGAAAGGTAACCAGATCGTTTGTTGTTGACAAGGATA-ACGCTGTTCAGGTGGTTACCCTGAACA-T-TTAGCTTGTGAGATATGTTCTTATGGAGAGTGAGGTATATATATACTGCGACATGTCTTTTTGGATGATTAGAGTTTACTGTTTTCTGTCAACAATTTACCATGTATACGAACTGCTGAAATTGCTGTCATGCCACTTATTAATGCCATACTCACATTTACCTTTAAAAAAAAA]
[+] EMBL AK100891 [CCTTGGCATCTGATCCTATTCCCCTCTCCGCGCACGTCGGGTTTCCCCCCCGTGGACAACGCAACCGACCGACCAAGCTGCGGACAGCGCCGTCTCTGCTGTCTCTCTCTGTATGCTTCCCTTCCTCCTCAAGCTGGGCCTCGGTGGTCGGTGGTTAGGTGAAGGTAAACCACCGGCTTTCTCACGCGCCTTTCTTTCTGTTCATTTCCTTGGGGTTTAATTCTTGGTTGCCAGCGAGCCCGGTAGGCAGTAGTCCACCCACCGGCAGGTTCTTGCTCCTCCTCCTCAGCCGCTGCCGGATTTGAGATGAGATGAGATGAGGAGGCGCTGGGGGTGCCTCTCCTCCCTGTGCCGCCCTCGCCGGGGTGGACGCGCGGCGGCGGCCCCGCTCCCGCAGCCAGATCCACCGCGTCTCGAGTCCAAGGAAGTAGAGGAGCACGGCGCTTCCGATAAAGTTGTCATGGAGAACATTCTGTCAAACAATGATTTTTCGGAAGGTCTACATTTGTGGCATCCTAATGGTTGCCATGGATTTGTGGCTGTTGAAGGATCAGGTTATCATCATGGAATAAGGCCTCACTCAGGGTCAAATTATGCCGTACTTACTCGTCGCACACATAATTGGCAAGGGCTTGAGCAGGACATAACAGAAAAGGTCACTGTTGGTACTGAGTACATTGTTGCTGCCCATGTCAGAGTCCATGGTGAACTCAATGAGCCTGTTGGAATTCAGGCCACTCTAAAACTTGAGGGCGATGGTTCTTCTACGAACTATCAATCAGTTGCAAGGATCTCAGCATCAAAAGACTGTTGGGAGAAGTTGGAAGGTTCATTTGAACTAAAAACTCTACCAAGACGTTTGGTATTCTACATTGAAGGCCCCCCTCCTGGTGTAGACTTGCTCATAGATTCAGTCACCATCTCCTACAAGAAAACAGAGCGGGCTGCATCCAAACTGGTTAGTGGAACAGAAAACATCATTTCAAATTATGATTTTTCGGAAGGCCTTCATTTGTGGAACCCTATCTGCTGTCATGCATATGTGGCATCTCAATGGTCTGGTTTCCTTGATGGTATTAGAGGGAGCTCAGGAGAAAATTATGCTGTAGTTTCGAAGAGAACTGAAAGCTGGCAAGGTCTTGAACAAGATATTACAGATAAAGTATCTGCTGGTACTGCTTATGCAGTATCAGCCTATGTTAGAGTTGATGGGAATATCCATACGAAAGTTGAAGTTAAAGCAACCTTGAGGTTGCATAACACAGATGATTCAACGCACTACAGTCCAGTTGGAAGCCTGTTAGCTTCAAAAGAAAAGTGGGAGAAGATGGAAGGATCCTTTTGCTTGACAAATATGCCAAAACGTGTAGTATTCTACCTGGAAGGACCTCCTGCTGGCGTGGACCTTATCATTGATTCCGTAAATGTAACTTGCTCTGGATATCAGCAGTTAAAAGAAGTAAAAGTACCAAGTGGAGTTGATACCATCGTTAAGAATCCTCACTTTGACGAAGGGTTAAACAATTGGTCTGGAAGAGGATGCAATATCTGTAGGCATGAGCTTACTGCTTATGGAAATGTCAAGCCTCTAAATGGCAGCTATTTTGCTTCAGCCACTGGACGGGTCCACAATTGGAACGGTATCCAGCAAGATATCACTGGCAGGGTACAGAGAAAAGTTCTTTATGAGATAAGTTCTGCTGTCCGCATATTTGGGAGTGCCAATGATACAGAAGTCTGCGTTACTCTGTGGGTACAAGAATATGGCCGTGAGCGATATGTAAGCCTTGCAAAGAACCCGGCATCTGATAAGCAATGGACACATCTAAAAGGAAAGTTCCTCCTCCATGCCCCG TTTTC AAAAGCTGTTA TTTTCGTAGAGGGGCCACCTGCAGGCATTGATATTCTTGTTGATGGCCTTGTCCTATCTCCAGCAAGAAAACTCCATGCTGCACCCCGCCCAAGAATTGAGAATGTTTCATATGGAGCTAATGTAATACATAACAGTGCTTTCAGTCATGGGCTTTCTGGGTGGAGTCCCATGGGGTCATGTCGATTGAGTATCCATACTGAATCACCCCATATGCTTTCTGCCATCTTGAAGGACCCCTCAGCTAAGCAACATATAAGAGGTTCTTATATTCTTGCCACAAACCGCACTGATGTGTGGATGGGCCCTTCCCAGTTGATAACTGACAAGCTTAGGCTGCACACCACTTACAGAGTTTCTGCTTGGGTACGTGCTGGGTCTGGAGGACATGGACGTTACCATGTAAATGTTTGTCTTGCTGTAGATCATCAGTGGGTTAATGGTGGGCAAGTAGAAGCTGATGGCGATCAATGGTATGAACTCAAAGGAGCATTCAAGCTTGAAAAGAAGCCATCCAAAGTTACTGCATATGTTCAGGGACCGCCTCCAGGTGTTGATCTCAGAGTTATGGGGTTCCAAATTTATGCTGTTGATAGAAAAGCACGTTTTGAATATCTGAAGGAGAAAACTGACAAGGTAAGGAAGCGTGATGTCATCCTGAAGTTCCAGGGATCAGATGCTGCAAACCTTTTTGGTTCATCTATCAAGATACAACAGACCGAGAACAGTTTTCCATTTGGATCATGCATAGGGAGAAGTAACATTGAGAATGAGGATCTTGCTGATTTCTTCATGAA GAACTTTAATTGGGCTGTATTTGAAAATGAACTGAAGTGGTACTGGACAGAGGCTGAACAAGGGAGACTAAATTATAAAGATTCTGATGAGTTGCTTGAATTTTGCCGGAAACATAACATTCAAGTTCGTGGTCACTGCTTATTCTGGGAAGTAGAAGATTCAGTCCAGCCATGGATTCGATCATTACATGGTCACCACCTGATGGCTGCTATACAGAATCGTTTGCAAAGTCTGTTGTCAAGGTACAAAGGTCAGTTTAAACATCATGATGTAAACAACGAGATGCTTCATGGGTCTTTCTACCAAGATAGACTGGGAAATGATATTAGAGCTCACATGTTTAGGGAAGCACATAAACTTGACCCTTCAGCAGTACTCTTTGTGAACGACTACAATGTTGAAGATCGATGCGACTCAAAATCTACACCAGAAAAATTAATTGAACAGATTGTTGATCTCCAAGAAAGGGGTGCTCCAGTTGGTGGGATTGGCTTGCAAGGTCATATCACGCATCCAGTGGGTGACATCATCTGCGATTCCCTGGACAAGCTCTCCATACTGGGTCTCCCTATCTGGATCACCGAATTGGATGTCACGGCTGAGAATGAACACATCCGAGCCGATGATCTGGAGGTGTACCTTCGCGAAGCCTTTGCGCATCCTTCCGTGGAGGGGATTATCCTTTGGGGATTCTGGGAGCTGTTCATGTTCCGAGAACACGCTCACCTGGTTGATGTTGATGGAACGAT CAA TG AGGC TGGCAAAAG G TA CA TTGC AC TG AAGC AAGAG TGGCTAA CCAGCATTAC TGGC AACGTGGATCACCATGGAGA GTTGAA G TTCAGAGGCTA CCATGGGTCATACACGGTAGAAGTAGCAACGCCTTCAGGAAAGGTAACCAGATCGTTTGTTGTTGACAAGGATA ACGCTGTTCAGGTGGTTACCCTGAACA T TTAGCTTGTGAGATATGTTCTTATGGAGAGTGAGGTATATATATACTGCGACATGTCTTTTTGGATGATTAGAGTTTACTGTTTTCTGTCAACAATTTACCATGTATACGAACTGCTGAAATTGCTGTCATGCCACTTATTAATGCCATACTCAC ]
[+] EMBL CF324814 [ TTATGGAAATGTCAAGCCTCTAAATGGCAGCTATTTTGCTTCAGCCACTGGACGGGTCCACAATTGGAACGGTATCCAGCAAGATATCACTGGCAGGGTACAGAGAAAAGTTCTTTATGAGATAAGTTCTGCTGTCCGCATATTTGGGAGTGCCAATGATACAGAAGTCCGCGTTACTCTGTGGGTACAAGAATATGGCCGTGAGCGATATGTAAGCCTTGCAAAGAACCCGGCATCTGATAAGCAATGGACACATCTAAAAGGAAAGTTCCTCCTCCATGCCCCG TTTTC AAAAGCTGTTA TTTTCGTAGAGGGGCCACCTGCAGGCATTGATATTCTTGTTGATGGCCTTGTCCTATCTCCAGCAAGAAAACTCCATGCTGCACCCCGCCCAAGAATTGAGAATGTTTCATATGGAGCTAATGTAATACATAACAGTGCTTTCAGTCATGGGCTTTCTGGGTGGAGTCCCATGGGGTCATGTCGATTGAGTATCCATACTGAATCACCCCA ]
[+] EMBL OSS4091A [ TCTGCTGTCCGCATATTTGGGAGTGCCAATAATACAGAAGTCTGCGTTACTCTGTGGGTACAAGAATATGGCCGTGAGCGATATGTAAGCCTTGCAAAGAACCCGGCATCTGATAAGCAATGGACACATCTAAAAGGAAAGTTCCTCCTCCATGCCCCGNTTTTCAAAAAGCTGTTATTTTTCGTAGAGGGGg ]
[+] EMBL CB668829 [ CTGGGTGGAGTACCATGGGGTCATGTCGATTGAGTATCCATACTGAATCACCCCATATGCAATCTGCCATCTTGAAGGACCCCTCACCTAAGCAACATATAAAAGGTTCTTATATTCTTGCCACAAACCGCACTGATGTGTGGATGGGCCCTTCCCAGTTGATAACTGACAAGCTTACGCTGCACACCACTTACAGAGTTTCTGCTTGGGTACCTGCTGGGTCTGGAAGACATGGACGTCACCATGTAAATGTTTGACTTGCTGTAGATCATCACTGGGTTAATGGTGGGCAAGTACAAACTGATGGCGATCAATGGTATGAACTCAAACGAGCATTCAAGCTTGAAAAGAATCCATCCAAAGTCACTGCATATGTTCAG ]
[+] EMBL OSS10461A [ ATGGCGATCAATGGTATGAACTCAAAGGAGCATTTAAGCTTGAAAAGAAGCCATCCAAAGTTACTGCATATGTTCAGGGACCGCCTCCAGGTGTTGATCTCAGAGTTATGGGGTTCCAAATTTATGCTGTTGATAGAAAAGCACGTTTTGAATATCTGAAGGAGAAAACTGACAAGGTAAGGAAGCGTGATGTCATCCTGAAGTTCCAGGGATCAGATGCTGCAAACCTTTTTGGTTCATCTATCAAGATACAACAGACCGAGAACAGTTTTCCATTTGGNTCATGCATAGGGAGAAGTAACATTGAGAATNAGGATCTTGCTGATTTCTTCATGAA GGACTTTAATTG ]
[+] EMBL OSS10460A [ ATGGCGATCAATGGTATGAACTCAAAGGAGCATTCAAGCTTGAAAAGAAGCCATCCAAAGTTACTGCATATGTTCAGGGACCGCCTCCAGGTGTTGATCTCAGAGTTATGGGGTTCCAAATTTATGCTGTTGATAGAAAAGCACGTTTTGAATATCTGAAGGAGAAAACTGACAAGGTAAGGAAGCGTGATGTCATCCTGAAGTTCCAGGGATCAGATGCTGCAAACCTTTTTGGTTCATCTATCAAGATACAACAGACCGAGAACAGTTTTCCATTTGGTTCATGCATAGGGAGAAGTAACATTGAGAATGAGGATCTTGCTGATTTCTTCATGAANGAACTTTAATTGGGCTGTATTTGAAAATGAACTGAAGTGGTACTGGACAGAGGCTG ACANGG ]
[+] EMBL AA750176 [ GATTCTGATGAGTTGCTTGAATTTTGCCGGAAACATAACATTCAAGTTCGTGGTCACTGCTTA TCTGGGAAGTAGAAGATTCAGTCCAGCCATGGATTCGATCATTACATGGTCACCACCTGATGGCTGCTATACAGAATC ]
[+] EMBL AU101994 [ CGATTCCAATTGAAGGCTTGGCAAAAGTGTTACCATTTGCCAACTTGAAAGCCAAAGAGTTGGCTAANCCCAGCATTACTTGGCAAACGTGGATCACCATGGAGA GTTGAA GTTTCAGAGGCTA CCATGGGTCATACACGGTAGAAGTAGCAACGCCTTCAGGAAAGGTAACCAGATCGTTTGTTGTTGACAAGGATA ACGCTGTTCAGGTGGTTACCCTGAACA T TTAGCTTGTGAGATATGTTCTTATGGAGAGTGAGGTATATATATACTGCGACATGTCTTTTTGGATGATTAGAGTTTACTGTTTTCTGTCAACAATTTACCATGTATACGAACTGCTGAAATTGCTGTCATGCCACTTATTAATGCCATACTCACATTTACCTTTAAAAA ]
[+] EMBL BI809503 [ ATGGACAGGTTGAACG TTCAGAGGCTACCCATGGGTCATAC CGGTAGAAGTAGCAACGCCTTCAGGAAAGGTAACCAGATC TTTGTTG TGACAAGGATATACGCTGTTCAGGTGGTTACCCTGAACACTGTTAGCTTGTGAGATATGTTCTTATGGAGAGTGAGGTATATATATACTGCGACATGTCTTTTTGGATGATTAGAGTTTACTGTTTTCTGTCAACAATATACCATGTATACGAATTGCTGAAATTGCTGTCGTGCCACTTATTAATGCCATACTCACATTTACCTTTAAAAAAAAA]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||