These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 3001 fasta sequence [GAACTAGCGCCGCTTCGTCGTCCTGCCGCTGCGGCTTGCAGGGAGAGACAGCGAGAGCTGTGCTGATGAAGTGATGAAACTTGTGGGCTTGCGGCTTCCAGGACCAAACTGCAGGGAGATGGCTCTGGTCACAAATGTGTGCGAATATGAAGAACTTGCAAAGCACAAACTGCCAAAGATGGTTTATGATTTCTATGCTGTTGACGCAGAAGACCAATGGACTCTCAGGGAGAACAGTGAGGCATTCTCCAGAATTTTGTAAGTTGTGCTCTAAATTGGTAGGGAATATCTGAAAATGGAGATAGGGAGGTCCTGATTTTGTGTTATATTCATAGAAGTTATTGTTAGGATGTAGCTTTTAGTTATTTTCATTTGACATTGTGTTTTGATTTTGAAATAAAATATATTACCCATTACTTCGTCTTTCAAAGTATATTATGGTGTCCTTTGTGGATAAATGATGTTAGGTTTCAGCCGGTTGTATTGGTTGATGTGTCCTGTATCGACATGTCTATGAATGTCTTAGGCTACAATATTTCCATGCCCATTATGATTGCTCCTACGGCTTTGCACAAATTGGCACATCCTGAAGGTTCTGGTTTGCTACCTTTATATCTTTCTTTTGGCAATCGCATATTTCAATGAGAAGTTCCTTTAGGGATATTTATCTGGAATGCAGGAGAGCTTGCTACTGCCAGAGCTGCAGCTGCTGCAGAAACTATAATGGTTTGAAAGATCGTAACAAATTTTATGCATTTTGATATCTACGTCTGACACATTGATTCACCAACTAGTCATATTTTCAGACATTGTCTTCATGGTCATCTTGTAGTATTGAAGAGGTTAATTTGGCAGGGCCTGGAGTTCGTTTCTTCCAACTTTCAATATACAAGGACAGGAACTTAGTGCAACAGCTTATCCAAAGGGCTGAAAAGGCTGGCTATAAGGCAATTGTACTGACTGTTGATGCTCCATGGCTTGGTCGCAGGGAAGCTGATGTCAAGAACAGGTTCACCTTGCCTCAAAATGTCATGTTGAAGATCTTTGAGGGGCTGGATCAAGGGAAGATAGATGAGACGAATGGTTCTGGTCTTGCTGCCTATGTCGCTAGCCAGATTGACCGCTCTTTTTCTTGGAAGGATATCAAGTGGTTACAGACAGTTACATCATTGCCGGTCTTAGTGAAAGGAATTATAACAGCACAAGACACTAGAATTGCTATAGAATACGGTGCAGCTGGTATCATCATGTCCAACCATGGCGGCCGCCAGCTAGACTATCTTCCTGCAACCATCAGCTGTCTAGAAGAGCTATGCCATATGTAACTCTCTTTTCAATCTTAATGAAATTTGGTCGGCTCCTTCACCGACTCAGCAATCAGCTGTGTAGAAGAGGTTGTCAGGGAAGCAAATGGGCGTGTGCCGGTGTTCATCGACAGCGGTTTTCGCCGCGGCACCGACGTGTTCAAGGCCCTGGCATTGGGAGCTTCAGGGGTATTTATTGGTAGGCCGGTGCTGTTCTCCCTCGCCATCGACGGCGAGGCCGGCGTGAGGAACGCGCTGCGGATGCTGAGAGACGAGCTGGAGATCACCATGGCGCTCAGCGGCTGCACGTCGGTGAAGGAGATCACGCGCGGCCACGTCGTCACCGAGAGCGACAGGATCCGCCGTTGTTCTCGGCTGTAGTGTACCCAGGTTTCCTTTGCGTTTGCGTTCTTGGGAGTGTTTTGGCTGACTGTGGAAAATTCTAATTTGTTTTATTGTGATGTTTTCTGATCTATTATATCGACCCTCTCATGGGGTATATATAGGAGTACATAGGGGATAGAGACTTGGAGTATAATACAAGTAAGAGTAGATTTATCTCTAGGATTCTATCTTTAGGACTCTATCTTATCTCTAGGAGTCAATCTCTAGGATATATCTTATCTCTAT-ATTTGTATTTGACTCTTATCTCTAACTAACACATTATATTTCTAACAAAAACCCTCAGTCGTAACGGGAGCGAAGCGAACGATTGCGACTGGATTTGAAATCTTCTATTTCTTCATCTTTCTTTGACTCACCATCATCGACTGCATCTCTGATGGACGGTCCTCCACCTGGTGCCTGCGTCCCCTTCTGTGTCGTCCCTTGACTCTCCTCTATTCCCTCCCGCAGTCATAGCGGGAGTGTCATGGACGATAGCGATGACACGGACGCTTGGACTGGAGTTTTCGTCAATGATTTTTGTTGTAGACGTTCGTCAATGTAGCCGATCATGAAGTAACTGTGGTTGTCGGTGTAGCCGCATATAGCCAAAGGCGAAAAAAAAAAAAATTTACGCCATGGTGTGAAGACAAAAACTGTAATTGTTAGCATCTTGCACCTTGTAGATGTCAGAGGATGCCATTAGGGACCTCTTGCATATGTCAGAGGACGTCGTTGGCAATGAGGCCACCACTTTGGTTGGTCCTTCTGCGCCGTATAGCGGTCACCACAATAGTGATGCCGGGTTGATGCAGTCGTTGTAGTCGTACATGACGTGATCGATGCCGTTGTCGGTGACGCGGTCGTTGCCGTCGTAGAGGACACGGTCGATGTCGTCGATGAAGCGTCTTGCAGATTAATCTGTCAGAGGACGCGAGGTGTCCATCTATGTAGACGAGTCGGCAGCGGCGATGCAGATCGATCCATGGATGAGGCCGGATGGTATGATGCTTGTTGACGTTGTCTGCTCCTGTAACACCTGCCGCATTGCTCCTGACGATCATATGGTTTTCTGTGGCTAGCTAATAGATCTAAAACTAATTATTAGAAAACGCATCTAATGATATGCGGTAAACTAATCTGTAAATGATTGGAGAGGCTAGCTAGCTAATGCGGTGCGGTGCCCCAGGGAGAAATTGATCTCATCTCCCTGGGGCAGCGCGGATGGAACCTAGCTGGAACCGAGGATCGATCGACGTTTGTCTACGGCTCTGATACCATGTAGAAAATCTAATACGCTGTATTTTGGTATT] [+] EMBL AK068129 [GAACTAGCGCCGCTTCGTCGTCCTGCCGCTGCGGCTTGCAGGGAGAGACAGCGAGAGCTGTGCTGATGAAGTGATGAAACTTGTGGGCTTGCGGCTTCCAGGACCAAACTGCAGGGAGATGGCTCTGGTCACAAATGTGTGCGAATATGAAGAACTTGCAAAGCACAAACTGCCAAAGATGGTTTATGATTTCTATGCTGTTGACGCAGAAGACCAATGGACTCTCAGGGAGAACAGTGAGGCATTCTCCAGAATTTTGTAAGTTGTGCTCTAAATTGGTAGGGAATATCTGAAAATGGAGATAGGGAGGTCCTGATTTTGTGTTATATTCATAGAAGTTATTGTTAGGATGTAGCTTTTAGTTATTTTCATTTGACATTGTGTTTTGATTTTGAAATAAAATATATTACCCATTACTTCGTCTTTCAAAGTATATTATGGTGTCCTTTGTGGATAAATGATGTTAGGTTTCAGCCGGTTGTATTGGTTGATGTGTCCTGTATCGACATGTCTATGAATGTCTTAGGCTACAATATTTCCATGCCCATTATGATTGCTCCTACGGCTTTGCACAAATTGGCACATCCTGAAGGTTCTGGTTTGCTACCTTTATATCTTTCTTTTGGCAATCGCATATTTCAATGAGAAGTTCCTTTAGGGATATTTATCTGGAATGCAGGAGAGCTTGCTACTGCCAGAGCTGCAGCTGCTGCAGAAACTATAATGGTTTGAAAGATCGTAACAAATTTTATGCATTTTGATATCTACGTCTGACACATTGATTCACCAACTAGTCATATTTTCAGACATTGTCTTCATGGTCATCTTGTAGTATTGAAGAGGTTAATTTGGCAGGGCCTGGAGTTCGTTTCTTCCAACTTTCAATATACAAGGACAGGAACTTAGTGCAACAGCTTATCCAAAGGGCTGAAAAGGCTGGCTATAAGGCAATTGTACTGACTGTTGATGCTCCATGGCTTGGTCGCAGGGAAGCTGATGTCAAGAACAGGTTCACCTTGCCTCAAAATGTCATGTTGAAGATCTTTGAGGGGCTGGATCAAGGGAAGATAGATGAGACGAATGGTTCTGGTCTTGCTGCCTATGTCGCTAGCCAGATTGACCGCTCTTTTTCTTGGAAGGATATCAAGTGGTTACAGACAGTTACATCATTGCCGGTCTTAGTGAAAGGAATTATAACAGCACAAGACACTAGAATTGCTATAGAATACGGTGCAGCTGGTATCATCATGTCCAACCATGGCGGCCGCCAGCTAGACTATCTTCCTGCAACCATCAGCTGTCTAGAAGAGCTATGCCATATGTAACTCTCTTTTCAATCTTAATGAAATTTGGTCGGCTCCTTCACCGACTCAGCAATCAGCTGTGTAGAAGAGGTTGTCAGGGAAGCAAATGGGCGTGTGCCGGTGTTCATCGACAGCGGTTTTCGCCGCGGCACCGACGTGTTCAAGGCCCTGGCATTGGGAGCTTCAGGGGTATTTATTGGTAGGCCGGTGCTGTTCTCCCTCGCCATCGACGGCGAGGCCGGCGTGAGGAACGCGCTGCGGATGCTGAGAGACGAGCTGGAGATCACCATGGCGCTCAGCGGCTGCACGTCGGTGAAGGAGATCACGCGCGGCCACGTCGTCACCGAGAGCGACAGGATCCGCCGTTGTTCTCGGCTGTAGTGTACCCAGGTTTCCTTTGCGTTTGCGTTCTTGGGAGTGTTTTGGCTGACTGTGGAAAATTCTAATTTGTTTTATTGTGATGTTTTCTGATCTATTATATCGACCCTCTCATGGGGTATATATAGGAGTACATAGGGGATAGAGACTTGGAGTATAATACAAGTAAGAGTAGATTTATCTCTAGGATTCTATCTTTAGGACTCTATCTTATCTCTAGGAGTCAATCTCTAGGATATATCTTATCTCTAT ATTTGTATTTGACTCTTATCTCTAACTAACACA ] [-] EMBL CB655800 [ GATGCTCCATGGCTTGGTCGCAGGGAAGCTGATGTCAAGAACAGGTTCACCTTGCCTCAAAATGTCATGTTGAAGATCTTTGAGGGGCTGGATCAAGGGAAGATAGATGAGACGAATGGTTCTGGTCTTGCTGCCTATGTCGCTAGCCAGATTGACCGCTCTTTTTCTTGGAAGGATATCAAGTGGTTACAGACAGTTACATCATTGCCGGTCTTAGTGAAAGGAATTATAACAGCACAAGACACTAGAATTGCTATAGAATACGGTGCAGCTGGTATCATCATGTCCAACCATGGCGGCCGCCAGCTAGACTATCTTCCTGCAACCATCAGCTGTCTAGAAGAGCTATGCCATATGTAACTCTCTTTTCAATCTTAATGAAATTTGGTCGGCTCCTTCACCGACTCAGCAATCAGCTGTGTAGAAGAGGTTGTCAGGGAAGCAAATGGGCGTGTGCCGGTGTTCATCGACAGCGGTTTTCGCCGCGGCACCGACGTGTTCAAGGCCCTGGCATTGGGAGCTTCAGGGGTATTTATTGGTAGGCCGGTGCTGTTCTCCCTCGCCATCGACGGCGAGGCCGGCGTGAGGAACGCGCTGCGGATGCTGAGAGACGAGCTGGAGATCACCATGGCGCTCAGCGGCTGCACGTCGGTGAAGGAGATCACGCGCGGCCACGTCGTCACCGAGAGCGACAGGATCCGCCGTTGTTCTCGGCTGTAGTGTACCCAGGTTTCCTTTGCGTTTGCGTTCTTGGGAGTGTTTTGGCTGACTGTGGAAAATTCTAATTTGTTTTATTGTGATGTTTTCTGATCTATTcaaaaagga ] [-] EMBL CF312313 [ GAAATTTGGTCGGCTCCTTCACCGACTCAGCAATCAGCTGTGTAGAAGAGGTTGTCAGGGAAGCAAATGGGCGTGTGCCGGTGTTCATCGACAGCGGTNTTCGCCGCGGCACCGACGTGTTCAAGGCCCTGGCATTGGGAGCTTCAGGGGTATTTATTGGTAGGCCGGTGCTGTTCTCCCTCGCCATCGACGGCGAGGCCGGCGTGAGGAACGCGCTGCGGATGCTGAGAGACGAGCTGGAGATCACCATGGCGCTCAGCGGCTGCACGTCGGTGAAGGAGATCACGCGCGGCCACGTCGTCCCCGAGA CGACAGGATCCGCCGTTGTTCTCGGCTGTAGTGTACCCAGGTTTCCTTTGCGTTTGCGTTCTTGGGAGTGTTTTGGCTGACTGTGGAAAATTCTAATTTGTTTTATTGTGATGTTTTCTGATCTATTATATCGACCCTCTCATGGGGTATATATAGGAGTACATAGGGGATAGAGACTTGGAGTATAATACAAGTAAGAGTAGATTTATCTCTAGGATTCTATCTTTAGGACTCTATCTTATCTCTAGGAGTCAATCTCTAGGATATATCTTATCTCTAT ATTTGTATTTGACTCTTATCTCTAACTAACACATTATATTTCTAACAAAAA ] [-] EMBL AK110679 [ aTTTTCTGATATATTGGATCGACCCTCTCATGGGGTATATATAGGAGTACATAGGGGATAGAGACTTGGAGTACAATACAAATAAGAGTAGATTTATCTTTAGGATTCTATCTCTAGGACTCTATCTTATCTCTAGGATTCTATCTCTAGGATATATCTTATCTCTATAATTTGTATTTGACTCTTATCTCTAACTACCATATTATACTTCTAACATTCCCCCTCAGTCGTAACGGGAGCGAAGCGAACGATTGCGACTGGATTTGAAATCTTCTATTTCTTCATCTTTCTTTGACTCACCATCATCGACTGCATCTCTGATGGACGGTCCTCCACCTGGTGCCTGCGTCCCCTTCTGTGTCGTCCCTTGACTCTCCTCTATTCCCTCCCGCAGTCATAGCGGGAGTGTCATGGACGATAGCGATGACACGGACGCTTGGACTGGAGTTTTCGTCAATGATTTTTGTTGTAGACGTTCGTCAATGTAGCCGATCATGAAGTAACTGTGGTTGTCGGTGTAGCCGCATATAGCCAAAGGCGAAAAAAAAAAAAATTTACGCCATGGTGTGAAGACAAAAACTGTAATTGTTAGCATCTTGCACCTTGTAGATGTCAGAGGATGCCATTAGGGACCTCTTGCATATGTCAGAGGACGTCGTTGGCAATGAGGCCACCACTTTGGTTGGTCCTTCTGCGCCGTATAGCGGTCACCACAATAGTGATGCCGGGTTGATGCAGTCGTTGTAGTCGTACATGACGTGATCGATGCCGTTGTCGGTGACGCGGTCGTTGCCGTCGTAGAGGACACGGTCGATGTCGTCGATGAAGCGTCTTGCAGATTAATCTGTCAGAGGACGCGAGGTGTCCATCTATGTAGACGAGTCGGCAGCGGCGATGCAGATCGATCCATGGATGAGGCCGGATGGTATGATGCTTGTTGACGTTGTCTGCTCCTGTAACACCTGCCGCATTGCTCCTGACGATCATATGGTTTTCTGTGGCTAGCTAATAGATCTAAAACTAATTATTAGAAAACGCATCTAATGATATGCGGTAAACTAATCTGTAAATGATTGGAGAGGCTAGCTAGCTAATGCGGTGCGGTGCCCCAGGGAGAAATTGATCTCATCTCCCTGGGGCAGCGCGGATGGAACCTAGCTGGAACCGAGGATCGATCGACGTTTGTCTACGGCTCTGATACCATGTAGAAAATCTAATACGCTGTATTTTGGTATT] consensusID : consensus_11528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1349 fasta sequence [AGCCAACTGCCCAAAGATGGTTTATGATTTCTATGCCTGTTTGACGCCAGAAGACCCATGGACTCTCAGGGAGAACAGTGAGGCATTCTCCAGAATTTTTGTTTTCACCGGTTGTATTGGTTGATGTGTCCTGTATCGACATGTCTATGAGTGTCTTAGGCTACAATATTTCCATGCCCATTATGATTGCTCCTACGGCTTTGCACAAATTGGCACATCCTGAAGGAGAGCTTGCTACTGCCAGAGCTGCAGCTGCTGCAGAAACTATAATGACATTGTCTTCATGGTCATCTTGTAGTATTGAAGAGGTTAATTTGGCAGGGCCTGGAGTTCGTTTCTTCCAACTTTCAATATACAAGGACAGGAACTTAGTGCAACAGCTTATCC-AAGGGCTGAAAAGGCTGGCTATAAGGCAATTGTACTGACTGTTGATGCTCCATGGCTTGGTCGCAGGGAAGCTGATGTCAAGAACAGGTTCACCTTGCCTCAAAATGTCATGTTGAAGATCTTTGAGGGGCTGGATCAAGGGAAGATAGATGAGACGAATGGTTCTGGTCTTGCTGCCTATGTCGCTAGCCAGATTGACCGCTCTTTTTCTTGGAAGGATATCAAGTGGTTACAGACAGTTACATCATTGCCGGTCTTAGTGAAAGGAATTATAACAGCACAAGACACTAGAATTGCTATAGAATACGGTGCAGCTGGTATCATCATGTCCAACCATGGCGGCCGCCAGCTAGATTATCTTCCTGCAACCATCAGCTGTCTAGAAGAGCTATGCCATATGTAACTCTCTTTTCAATCTTAATGAAATTTGGTCGGCTCCTTCACCGACTCAGCAATCAGCTGTGTAGAAGAGGTTGTCAGGGAAGCAAATGGGCGTGTGCCGGTGTTCATCGACAGCGGTTTTCGCCGCGGCACCGACGTGTTCAAGGCCCTGGCATTGGGAGCTTCAGGGGTATTTATTGGTAGGCCGGTGCTGTTCTCCCTCGCCATCGACGGCGAGGCCGGCGTGAGGAACGCGCTGCGGATGCTGAGAGACGAGCTGGAGATCACCATGGCGCTCAGCGGCTGCACGTCGGTGAAGGAGATCACGCGCGGCCACGTCGTCACCGAGAGCGACAGGATCCGCCGTTGTTCTCGGCTGTAGTGTACCCAGGTTTCCTTTGCGTTTGCGTTCTTGGGAGTGTTTTGGCTGCCTGTGGAAAATTCTAATTTGTTTTATTGTGATGTTTTCTGATCTATTATATCGACCCTCTCATGGGGTATATATAGGAGTACATAGGGGATAGAGACTTGGAGTATAAGGCAAGTAAGAGTAGATTTATCTCTAAAAAAACCCTAAAAGG] [-] EMBL BU667107 [AGCCAACTGCCCAAAGATGGTTTATGATTTCTATGCCTGTTTGACGCCAGAAGACCCATGGACTCTCAGGGAGAACAGTGAGGCATTCTCCAGAATTTTTGTTTTCACCGGTTGTATTGGTTGATGTGTCCTGTATCGACATGTCTATGAGTGTCTTAGGCTACAATATTTCCATGCCCATTATGATTGCTCCTACGGCTTTGCACAAATTGGCACATCCTGAAGGAGAGCTTGCTACTGCCAGAGCTGCAGCTGCTGCAGAAACTATAATGACATTGTCTTCATGGTCATCTTGTAGTATTGAAGAGGTTAATTTGGCAGGGCCTGGAGTTCGTTTCTTCCAACTTTCAATATACAAGGACAGGAACTTAGTGCAACAGCTTATCC AAGGGCTGAAAAGGCTGGCTATAAGGCAATTGTACTGACTGTTGATGCTCCATGGCTTGGTCGCAGGGAAGCTGATGTCAAGAACAGGTTCACCTTGCCTCAAAATGTCATGTTGAAGATCTTTGAGGGGCTGGATCAAGGGAAGATAGATGAGACGAATGGTTCTGGTCTTGCTGCCTATGTCGCTAGCCAGATTGACCGCTCTTTTTCTTGGAAGGATATCAAGTGGTTACAGACAGTTACATCATTGCCGGTCTTAGTGAAAGGAATTATAACAGCACAAGACACTAGAATTGCTATAGAATACGGTGCAGCTGGTATCATCATGTCC ] [+] EMBL CF312312 [ GCTTGCTACTGCCAGAGCTGCAGCTGCTGCAGAAACTATAATGACATTGTCTTTATGGTCATCTTGTAGTATTGAAGAGGTTAATTTGGCAGGGCCTGGAGTTCGTTTCTTCCAACTTTCAATATACAAGGACAGGAACTTAGTGCAACAGCTTATCCAAAGGGCTGAAAAGGCTGGCTATAAGGCAATTGCACTGACTGTTGAT ] [-] EMBL CB653656 [ ACAGCCCAAGACACTAGAATTGCTATAGAATACGGTGCAGCTGGTATCATCATGTCCAACCATGGCGGCCGCCAGCTAGATTATCTTCCTGCAACCATCAGCTGTCTAGAAGAGCTATGCCATATGTAACTCTCTTTTCAATCTTAATGAAATTTGGTCGGCTCCTTCACCGACTCAGCAATCAGCTGTGTAGAAGAGGTTGTCAGGGAAGCAAATGGGCGTGTGCCGGTGTTCATCGACAGCGGTTTTCGCCGCGGCACCGACGTGTTCAAGGCCCTGGCATTGGGAGCTTCAGGGGTATTTATTGGTAGGCCGGTGCTGTTCTCCCTCGCCATCGACGGCGAGGCCGGCGTGAGGAACGCGCTGCGGATGCTGAGAGACGAGCTGGAGATCACCATGGCGCTCAGCGGCTGCACGTCGGTGAAGGAGATCACGCGCGGCCACGTCGTCACCGAGAGCGACAGGATCCGCCGTTGTTCTCGGCTGTAGTGTACCCAGGTTTCCTTTGCGTTTGCGTTCTTGGGAGTGTTTTGGCTGCCTGTGGAAAATTCTAATTTGTTTTATTGTGATGTTTTCTGATCTATTATATCGACCCTCTCATGGGGTATATATAGGAGTACATAGGGGATAGAGACTTGGAGTATAAGGCAAGTAAGAGTAGATTTATCTCTAAAAAAACCCTAAAAGG] consensusID : consensus_11528#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence [ATCATCCCAATCGTCCGCTACAGCCTACAAATCGCGGTGATGGTCGCGTCAGCGTCGCAAGCTACCGAACTAGCGCCGCTTCGTCGTCCTGCCGCTGCGGCTTGCAGGGAGAGACAGCGAGAGCTGTGCTGATGAAGTGATGAAACTTGTGGGCTTGCGGCTTCCAGGACCAAACTGCAGGGAGATGGCTCTGGTCACAAATGTGTGCGAATATGAAGAACTTGCAAAGCACAAACTGCCAAAGATGGTTTATGATTTCTATGCTGTTGACGCAGAAGACCAATGGACTCTCAGGGAGAACAGTGAGGCATTCTCCAGAATTTTGTTTCAGCCGGTTGTATTGGTTGATGTGTCCTGTATCGACATGTCTATGAGTGTCTTAGGCTACAATATTTCCATGCCCATTATGATTGCTCCTACGGCTTTGCACAAATTGGCACATCCTGAAGGAGAGCTTGCTACTGCCAGAGCTGCAGCTGCTGCAGAAACTATAATGTATTGAAGAGGTTAATTTGGCAGGGCCTGGAGTTCGTTTCTTCCAACTTTCAATATACAAGGACAGGAACTTAGTGCAACAGCTTATCCAAAGGGCTGAAAAGGCTGGCTATAAGGCAATTGTACTGACTGTTGATGCTCCATGGCTTGGTCGCAGGGAAGCTGATGTCAAGAACAGGTTCACCTTGCCTCAAAATGTCATGTTGAAGATCTTTGAGGGGCTGGATNCAGGGAAGATAGATGAGACGAATGGTTCTGGTCTTGCTGCCTATGTCGCTAGCCAGATTGACCGCTCTTTTTCTTGGAAGGATATCAAGTGGTTACAGACAGTT] [+] EMBL CB655799 [ATCATCCCAATCGTCCGCTACAGCCTACAAATCGCGGTGATGGTCGCGTCAGCGTCGCAAGCTACCGAACTAGCGCCGCTTCGTCGTCCTGCCGCTGCGGCTTGCAGGGAGAGACAGCGAGAGCTGTGCTGATGAAGTGATGAAACTTGTGGGCTTGCGGCTTCCAGGACCAAACTGCAGGGAGATGGCTCTGGTCACAAATGTGTGCGAATATGAAGAACTTGCAAAGCACAAACTGCCAAAGATGGTTTATGATTTCTATGCTGTTGACGCAGAAGACCAATGGACTCTCAGGGAGAACAGTGAGGCATTCTCCAGAATTTTGTTTCAGCCGGTTGTATTGGTTGATGTGTCCTGTATCGACATGTCTATGAGTGTCTTAGGCTACAATATTTCCATGCCCATTATGATTGCTCCTACGGCTTTGCACAAATTGGCACATCCTGAAGGAGAGCTTGCTACTGCCAGAGCTGCAGCTGCTGCAGAAACTATAATGTATTGAAGAGGTTAATTTGGCAGGGCCTGGAGTTCGTTTCTTCCAACTTTCAATATACAAGGACAGGAACTTAGTGCAACAGCTTATCCAAAGGGCTGAAAAGGCTGGCTATAAGGCAATTGTACTGACTGTTGATGCTCCATGGCTTGGTCGCAGGGAAGCTGATGTCAAGAACAGGTTCACCTTGCCTCAAAATGTCATGTTGAAGATCTTTGAGGGGCTGGATNCAGGGAAGATAGATGAGACGAATGGTTCTGGTCTTGCTGCCTATGTCGCTAGCCAGATTGACCGCTCTTTTTCTTGGAAGGATATCAAGTGGTTACAGACAGTT] consensusID : consensus_11528#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence [GAAGCGTGCGGAATGGCTGAGAGACGAGCTGGAGATTCACCCATTGGGCTCCAGCCGGCCTGGCANCGTCGGTGAAGGAGGATCACGCGCGGCCACGTCGTCACCGAGAGCGACAGGATCGCCGTTGTTCTCGGCTGTAGTGTACCCAGGTTTCCTTTGCGTTTGCGTTCTTGGGAGTGTTTTGGCTGACTGTGNNAAANTCTAATTT] [-] EMBL D42469 [GAAGCGTGCGGAATGGCTGAGAGACGAGCTGGAGATTCACCCATTGGGCTCCAGCCGGCCTGGCANCGTCGGTGAAGGAGGATCACGCGCGGCCACGTCGTCACCGAGAGCGACAGGATCGCCGTTGTTCTCGGCTGTAGTGTACCCAGGTTTCCTTTGCGTTTGCGTTCTTGGGAGTGTTTTGGCTGACTGTGNNAAANTCTAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GAACTAGCGCCGCTTCGTCGTCCTGCCGCTGCGGCTTGCAGGGAGAGACAGCGAGAGCTG 60 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 TGCTGATGAAGTGATGAAACTTGTGGGCTTGCGGCTTCCAGGACCAAACTGCAGGGAGAT 120 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GGCTCTGGTCACAAATGTGTGCGAATATGAAGAACTTGCAAAGCACAAACTGCCAAAGAT 180 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GGTTTATGATTTCTATGCTGTTGACGCAGAAGACCAATGGACTCTCAGGGAGAACAGTGA 240 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GGCATTCTCCAGAATTTTGTAAGTTGTGCTCTAAATTGGTAGGGAATATCTGAAAATGGA 300 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GATAGGGAGGTCCTGATTTTGTGTTATATTCATAGAAGTTATTGTTAGGATGTAGCTTTT 360 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 AGTTATTTTCATTTGACATTGTGTTTTGATTTTGAAATAAAATATATTACCCATTACTTC 420 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GTCTTTCAAAGTATATTATGGTGTCCTTTGTGGATAAATGATGTTAGGTTTCAGCCGGTT 480 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------AGCCAA 6 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GTATTGGTTGATGTGTCCTGTATCGACATGTCTATGAATGTCTTAGGCTACAATATTTCC 540 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 CTGCCCAAAGATGGTTTATGATTTCTATGCCTGTTTGACGCCAGAAGACCCATGGACTCT 66 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 ATGCCCATTATGATTGCTCCTACGGCTTTGCACAAATTGGCACATCCTGAAGGTTCTGGT 600 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 CAGGGAGAACAGTGAGGCATTCTCCAGAATTTTTGTTTTCACCGGTTGTATTGGTTGATG 126 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 TTGCTACCTTTATATCTTTCTTTTGGCAATCGCATATTTCAATGAGAAGTTCCTTTAGGG 660 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 TGTCCTGTATCGACATGTCTATGAGTGTCTTAGGCTACAATATTTCCATGCCCATTATGA 186 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 ATATTTATCTGGAATGCAGGAGAGCTTGCTACTGCCAGAGCTGCAGCTGCTGCAGAAACT 720 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 TTGCTCCTACGGCTTTGCACAAATTGGCACATCCTGAAGGAGAGCTTGCTACTGCCAGAG 246 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 ATAATGGTTTGAAAGATCGTAACAAATTTTATGCATTTTGATATCTACGTCTGACACATT 780 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 CTGCAGCTGCTGCAGAAACTATAATGACATTGTCTTCATGGTCATCTTGTAGTATTGAAG 306 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GATTCACCAACTAGTCATATTTTCAGACATTGTCTTCATGGTCATCTTGTAGTATTGAAG 840 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 AGGTTAATTTGGCAGGGCCTGGAGTTCGTTTCTTCCAACTTTCAATATACAAGGACAGGA 366 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 AGGTTAATTTGGCAGGGCCTGGAGTTCGTTTCTTCCAACTTTCAATATACAAGGACAGGA 900 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ACTTAGTGCAACAGCTTATCCAA-GGGCTGAAAAGGCTGGCTATAAGGCAATTGTACTGA 425 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 ACTTAGTGCAACAGCTTATCCAAAGGGCTGAAAAGGCTGGCTATAAGGCAATTGTACTGA 960 consensus_11528#2 ------------------------------ATCATCCCAATCGTCCGCTACAGCCTACAA 30 consensus_11528#1 CTGTTGATGCTCCATGGCTTGGTCGCAGGGAAGCTGATGTCAAGAACAGGTTCACCTTGC 485 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 CTGTTGATGCTCCATGGCTTGGTCGCAGGGAAGCTGATGTCAAGAACAGGTTCACCTTGC 1020 consensus_11528#2 ATCGCGGTGATGGTCGCGTCAGCGTCGCAAGCTACCGAACTAGCGCCGCTTCGTCGTCCT 90 consensus_11528#1 CTCAAAATGTCATGTTGAAGATCTTTGAGGGGCTGGATCAAGGGAAGATAGATGAGACGA 545 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 CTCAAAATGTCATGTTGAAGATCTTTGAGGGGCTGGATCAAGGGAAGATAGATGAGACGA 1080 consensus_11528#2 GCCGCTGCGGCTTGCAGGGAGAGACAGCGAGAGCTGTGCTGATGAAGTGATGAAACTTGT 150 consensus_11528#1 ATGGTTCTGGTCTTGCTGCCTATGTCGCTAGCCAGATTGACCGCTCTTTTTCTTGGAAGG 605 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 ATGGTTCTGGTCTTGCTGCCTATGTCGCTAGCCAGATTGACCGCTCTTTTTCTTGGAAGG 1140 consensus_11528#2 GGGCTTGCGGCTTCCAGGACCAAACTGCAGGGAGATGGCTCTGGTCACAAATGTGTGCGA 210 consensus_11528#1 ATATCAAGTGGTTACAGACAGTTACATCATTGCCGGTCTTAGTGAAAGGAATTATAACAG 665 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 ATATCAAGTGGTTACAGACAGTTACATCATTGCCGGTCTTAGTGAAAGGAATTATAACAG 1200 consensus_11528#2 ATATGAAGAACTTGCAAAGCACAAACTGCCAAAGATGGTTTATGATTTCTATGCTGTTGA 270 consensus_11528#1 CACAAGACACTAGAATTGCTATAGAATACGGTGCAGCTGGTATCATCATGTCCAACCATG 725 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 CACAAGACACTAGAATTGCTATAGAATACGGTGCAGCTGGTATCATCATGTCCAACCATG 1260 consensus_11528#2 CGCAGAAGACCAATGGACTCTCAGGGAGAACAGTGAGGCATTCTCCAGAATTTTGTTTCA 330 consensus_11528#1 GCGGCCGCCAGCTAGATTATCTTCCTGCAACCATCAGCTGTCTAGAAGAGCTATGCCATA 785 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GCGGCCGCCAGCTAGACTATCTTCCTGCAACCATCAGCTGTCTAGAAGAGCTATGCCATA 1320 consensus_11528#2 GCCGGTTGTATTGGTTGATGTGTCCTGTATCGACATGTCTATGAGTGTCTTAGGCTACAA 390 consensus_11528#1 TGTAACTCTCTTTTCAATCTTAATGAAATTTGGTCGGCTCCTTCACCGACTCAGCAATCA 845 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 TGTAACTCTCTTTTCAATCTTAATGAAATTTGGTCGGCTCCTTCACCGACTCAGCAATCA 1380 consensus_11528#2 TATTTCCATGCCCATTATGATTGCTCCTACGGCTTTGCACAAATTGGCACATCCTGAAGG 450 consensus_11528#1 GCTGTGTAGAAGAGGTTGTCAGGGAAGCAAATGGGCGTGTGCCGGTGTTCATCGACAGCG 905 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GCTGTGTAGAAGAGGTTGTCAGGGAAGCAAATGGGCGTGTGCCGGTGTTCATCGACAGCG 1440 consensus_11528#2 AGAGCTTGCTACTGCCAGAGCTGCAGCTGCTGCAGAAACTATAATGTATTGAAGAGGTTA 510 consensus_11528#1 GTTTTCGCCGCGGCACCGACGTGTTCAAGGCCCTGGCATTGGGAGCTTCAGGGGTATTTA 965 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GTTTTCGCCGCGGCACCGACGTGTTCAAGGCCCTGGCATTGGGAGCTTCAGGGGTATTTA 1500 consensus_11528#2 ATTTGGCAGGGCCTGGAGTTCGTTTCTTCCAACTTTCAATATACAAGGACAGGAACTTAG 570 consensus_11528#1 TTGGTAGGCCGGTGCTGTTCTCCCTCGCCATCGACGGCGAGGCCGGCGTGAGGAACGC-- 1023 consensus_11528#3 ---------------------------------------------------GAAGCGT-- 7 consensus_11528#0 TTGGTAGGCCGGTGCTGTTCTCCCTCGCCATCGACGGCGAGGCCGGCGTGAGGAACGC-- 1558 consensus_11528#2 TGCAACAGCTTATCCAAAGGGCTGAAAAGGCTGGCTATAAGGCAATTGTACTGACTGTTG 630 * * consensus_11528#1 --GCTGCGGATGCTGAGAGACGAGCTGGAGATC--ACCATGGCGCTC-AGC--GGCTGC- 1075 consensus_11528#3 --GCGGAATG-GCTGAGAGACGAGCTGGAGATTCACCCATTGGGCTCCAGCCGGCCTGGC 64 consensus_11528#0 --GCTGCGGATGCTGAGAGACGAGCTGGAGATC--ACCATGGCGCTC-AGC--GGCTGC- 1610 consensus_11528#2 ATGCTCCATGGCTTGGTCGCAGGGAAGCTGATGTCAAGAACAGGTTC-ACCTTGCCTCAA 689 ** ** * * * * *** * * ** * * * ** consensus_11528#1 -ACGTCGGTGAAGGAG-ATCACGCGCGGCCACGTCGTCACCGAGAGCGACAGGATCCGCC 1133 consensus_11528#3 ANCGTCGGTGAAGGAGGATCACGCGCGGCCACGTCGTCACCGAGAGCGACAGGATC-GCC 123 consensus_11528#0 -ACGTCGGTGAAGGAG-ATCACGCGCGGCCACGTCGTCACCGAGAGCGACAGGATCCGCC 1668 consensus_11528#2 AATGTCA-TGTTGAAG-ATCTTTGAGGGGCTGGATNCAGGGAAGATAGATGAGACGAATG 747 *** ** * ** *** ** * * *** ** ** consensus_11528#1 GTTGT--TCTCGGCTGTAGTGTACCCAGGTTTCCTTTGCGTTTGCGTTCTTGGGAGTGTT 1191 consensus_11528#3 GTTGT--TCTCGGCTGTAGTGTACCCAGGTTTCCTTTGCGTTTGCGTTCTTGGGAGTGTT 181 consensus_11528#0 GTTGT--TCTCGGCTGTAGTGTACCCAGGTTTCCTTTGCGTTTGCGTTCTTGGGAGTGTT 1726 consensus_11528#2 GTTCTGGTCTTGCTGCCTATGTCGCTAGCCAGATTGACCGCTCTTTTTCTTGGAAGGATA 807 *** * *** * *** * ** * ** * ******* ** * consensus_11528#1 TTGGCTGCCTGTGGAAAATTCTAATTTGTTTTATTGTGATGTTTTCTGATCTATTATATC 1251 consensus_11528#3 TTGGCTGACTGTGNNAAANTCTAATTT--------------------------------- 208 consensus_11528#0 TTGGCTGACTGTGGAAAATTCTAATTTGTTTTATTGTGATGTTTTCTGATCTATTATATC 1786 consensus_11528#2 TCAAGTGGTTACAGACAGTT---------------------------------------- 827 * ** * * * consensus_11528#1 GACCCTCTCATGGGGTATATATAGGAGTACATAGGGGATAGAGACTTGGAGTATAAGGCA 1311 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GACCCTCTCATGGGGTATATATAGGAGTACATAGGGGATAGAGACTTGGAGTATAATACA 1846 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 AGTAAGAGTAGATTTATCTCTAAAAAAACCCTAAAAGG---------------------- 1349 consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 AGTAAGAGTAGATTTATCTCTAGGATTCTATCTTTAGGACTCTATCTTATCTCTAGGAGT 1906 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 CAATCTCTAGGATATATCTTATCTCTATATTTGTATTTGACTCTTATCTCTAACTAACAC 1966 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 ATTATATTTCTAACAAAAACCCTCAGTCGTAACGGGAGCGAAGCGAACGATTGCGACTGG 2026 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 ATTTGAAATCTTCTATTTCTTCATCTTTCTTTGACTCACCATCATCGACTGCATCTCTGA 2086 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 TGGACGGTCCTCCACCTGGTGCCTGCGTCCCCTTCTGTGTCGTCCCTTGACTCTCCTCTA 2146 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 TTCCCTCCCGCAGTCATAGCGGGAGTGTCATGGACGATAGCGATGACACGGACGCTTGGA 2206 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 CTGGAGTTTTCGTCAATGATTTTTGTTGTAGACGTTCGTCAATGTAGCCGATCATGAAGT 2266 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 AACTGTGGTTGTCGGTGTAGCCGCATATAGCCAAAGGCGAAAAAAAAAAAAATTTACGCC 2326 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 ATGGTGTGAAGACAAAAACTGTAATTGTTAGCATCTTGCACCTTGTAGATGTCAGAGGAT 2386 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GCCATTAGGGACCTCTTGCATATGTCAGAGGACGTCGTTGGCAATGAGGCCACCACTTTG 2446 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GTTGGTCCTTCTGCGCCGTATAGCGGTCACCACAATAGTGATGCCGGGTTGATGCAGTCG 2506 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 TTGTAGTCGTACATGACGTGATCGATGCCGTTGTCGGTGACGCGGTCGTTGCCGTCGTAG 2566 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 AGGACACGGTCGATGTCGTCGATGAAGCGTCTTGCAGATTAATCTGTCAGAGGACGCGAG 2626 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GTGTCCATCTATGTAGACGAGTCGGCAGCGGCGATGCAGATCGATCCATGGATGAGGCCG 2686 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GATGGTATGATGCTTGTTGACGTTGTCTGCTCCTGTAACACCTGCCGCATTGCTCCTGAC 2746 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GATCATATGGTTTTCTGTGGCTAGCTAATAGATCTAAAACTAATTATTAGAAAACGCATC 2806 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 TAATGATATGCGGTAAACTAATCTGTAAATGATTGGAGAGGCTAGCTAGCTAATGCGGTG 2866 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 CGGTGCCCCAGGGAGAAATTGATCTCATCTCCCTGGGGCAGCGCGGATGGAACCTAGCTG 2926 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 ------------------------------------------------------------ consensus_11528#3 ------------------------------------------------------------ consensus_11528#0 GAACCGAGGATCGATCGACGTTTGTCTACGGCTCTGATACCATGTAGAAAATCTAATACG 2986 consensus_11528#2 ------------------------------------------------------------ consensus_11528#1 --------------- consensus_11528#3 --------------- consensus_11528#0 CTGTATTTTGGTATT 3001 consensus_11528#2 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||