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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1228 fasta sequence
[GGCGGGCGACGATCCCGGCGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGGAGACGGGGGCCGCGGGGGCGGCGGCGAGGCCGCAGTACGCGGCGGATGAGGGGTTGTTCTACGAGGAGGATAAGAGGGGGGCGAAGGCGGGTGGAGTTGCTGCGGGCGGCGCGGAGGAGGGGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAGAGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCCAAAACAGGTACAGGAAAGACTTTGGCTTTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCAATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAGGTGCTCTGAATCTGTCAGAGGTCCGGTTTGTTGTTCTTGATGAAGCAGACCAGATGTTGTCAGTGGGTTTTGATGAAGATGTTGAGACAATTTTGGATAGAGTACCTCCAAAACGTCAAACCTTGATGTTCTCTGCGACTATGCCAACTTGGATTCAGAGACTCACCCAGAAATACCTTAAGAATCCTGTTACAATTGACCTTGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTAAGGAGCATGCAAAAGGTGGTAAATGCATTGTATTTACACAAACAAAAAGAGATGCTGATCGATTGTCCTACACCATGGGTCGGAGTTTCCAGTGCCAGGCCCTTCATGGGGACATCACACAAGCCCAAAGAGAGAGAACATTAAAAGGATTCCGTGAAGGCCATTTTAATATTTTGATTGCCACTGATGTTGCTGCTCGTGGTTTGGATATCCCAAATGTAGACTTGGTGATACATTTTGAATTGCNCAACTCCTCGGAATTGTTTGTTCACAGGTCTGGCCGAACTGGCCGTGCTGGAAAGAAGGGTAAGGCAATTGTTATGCACAG]
[+] EMBL CB638609 [GGCGGGCGACGATCCCGGCGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGGAGACGGGGGCCGCGGGGGCGGCGGCGAAGCCGCANTACGCGGCGGATGAGGGGTTGTTCTACGAGGAGGATAAGAGGGGGGCGAAGGCGGGTGGAGTTGCTGCGG ]
[+] EMBL CB638579 [GGCGGGCGACGATCCCGGCGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGGAGACGGGGGCCGCGGGGGCGGCGGCGAGGCCGCAGTACGCGGCGGATGAGGGGTTGTTCTACGAGGAGGATAAGAGGGGGGCGAAGGCGGGTGGAGTTGCTGCGGGCGGCGCGGAGGAGGGGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAACCTGTTCCCAATCCAGAGAGCTGTCCTTGAACCA CAATGCAAGG ]
[+] EMBL CB627521 [GGCGGGCGACGATCCCGGCGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGGAGACGGGGGCCGCGGGGGCGGCGGCGAGGCCGCAGTACGCGGCGGATGAGGGGTTGTTCTACGAGGAGGATAAGAGGGGGGCGAAGGCGGGTGGAGTTGCTGCGGGCGGCGCGGAGGAGGGGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAGAGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCCAAAACAGGTACAGGAAAGACTTTGGCTTTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCAATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAGGTGCTCTGCATCTGTCAGAGGTCCGGTTTG ]
[+] EMBL CB655010 [ GGGGCCCTTCTACGAGGAGGATAAGAGGGGGGCGAAGGCGGGTGGAGTTGCTGCGGGCGGCGCGGAGGAGGGGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAGAGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCCAAAACAGGTACAGGAAAGACTTTGGCTTTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCAATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAGGTGCTCTGAATCTGTCAGAGGTCCGGTTTGTTGTTCTTGATGAAGCAGACCAGATGTTGTCAGTGGGTTTTGATGAAGATGTTGAGACAATTTTGGATAGAGTACCTCCAAAACGTCAAACCTTGATGTTCTCTGCGACTATGCCAACTTGGATTCAGAGACTCACCCAGAAATACCTTAAGAATCCTGTTACAATTGA ]
[+] EMBL CB636631 [ GGCGGCGCGGAGGAGGGGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAGAGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCCAAAACAGGTACAGGAAAGACTTTGGCTTTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTGTGTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCAATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAGGTGCTCTGAATCTGTCAGAGGTCCGGTTTGTTGTTCTTGATGAAGCAGACCAGATGTTGTCAGTGGGTTTTGATGAAGATGTTGAGACAATTTTGGATAGAGTACCTCCAAAACGTCAAACCTTGATGT ]
[+] EMBL CB662146 [ AGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCCAAAACAGGTACAGGAAAGACTTTGGCTTTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCAATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAGGTGCTCTGAATCTGTCAGAGGTCCGGTTTGTTGTTCTTGATGAAGCAGACCAGATGTTGTCAGTGGGTTTTGATGAAGATGTTGAGACAATTTTGGATAGAGTACCTCCAAAACGTCAAACCTTGATGTTCTCTGCGACTATGCCAACTTGGATTCAGAGACTCACCCAGAAATACCTTAAGAATCCTGTTACAATTGACCTTGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTAAGGAGCATGCAAAAGGTGGTAAATGCATTGTATTTACACAAACAAAAAGAGATGCTGATCGATTGTCCTACACCATGGGTCGGAGTTTCCAGTGCCAGGCCCTTCATGGGGACATCACANCAGCCCAAAGAGAGAGAACATTAAAAGGATTCCGTGAAGGCCATTTTAATATTTTGATTGCCACTG ]
[+] EMBL CB629521 [ CGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCAATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAGGTGCTCTGAATCTGTCAGAGGTCCGGTTTGTTGTTCTTGATGAAGCAGACCAGATGTTGTCAGTGGGTTTTGATGAAGATGTTGAGACAATTTTGGATAGAGTACCTCCAAAACGTCAAACCTTGATGTTCTCTGCGACTATGCCAACTTGGATTCAGAGACTCACCCAGAAATACCTTAAGAATCCTGTTACAATTGACCTTGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTAAGGAGCATGCAAAAGGTGGTAAATGCATTGTATTTACACAAACAAAAAGAGATGCTGATCGATTGTCCTACACCATGGGTCGGAGTTTCCAGTGCCAGGCCCTTCATGGGGACATCACACAAGCCCAAAGAGAGAGAACATTAAAAGGATTCCGTGAAGGCCATTTTAATATTTTGATTGCCACTGATGTTGCTGCTCGTGGTTTGGATATCCCAAATGTAGACTTGGTGATACATTTTGAATTGCNCAACTC ]
[+] EMBL AU225408 [ AAGGAATCAGTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTAAGGAGCATGCAAAAGGTGGTAAATGCATTGTATTTACACAAACAAAAAGAGATGCTGATCGATTGTCCTACACCATGGGTCGGAGTTTCCAGTGCCAGGCCCTTCATGGGGACATCACACAAGCCCAAAGAGAGAGAACATTAAAAGGATTCCGTGAAGGCCATTTTAATATTTTGATTGCCACTGATGTTGCTGCTCGTGGTTTGGATATCCCAAATGTAGACTTGGTGATACATTTTGAATTGCCAAACTCCTCGGAATTGTTTGTTCACAGGTCTGGCCGAACTGGCCGTGCTGGAAAGAAGGGTAAGGCAATTGTTATGCACAG]
consensusID : consensus_11534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 187 fasta sequence
[GGCGGGCGACGATCCCGGAGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGGAGACGGGGGCCGCGGGGGCGGCGGCGACGCCGCACCACGCGGCGGATGAGGGGTTGTTCTACGAGGAGGATAAAACGGGGGCGAAAGAAGTTGGAGCTGCTGCGGGCGGCACGGAGGATGAGTTGGA]
[+] EMBL CB664210 [GGCGGGCGACGATCCCGGAGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGGAGACGGGGGCCGCGGGGGCGGCGGCGACGCCGCACCACGCGGCGGATGAGGGGTTGTTCTACGAGGAGGATAAAACGGGGGCGAAAGAAGTTGGAGCTGCTGCGGGCGGCACGGAGGATGAGTTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11534#0 GGCGGGCGACGATCCCGGCGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGG 60
consensus_11534#1 GGCGGGCGACGATCCCGGAGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGG 60
****************** *****************************************
consensus_11534#0 AGACGGGGGCCGCGGGGGCGGCGGCGAGGCCGCAGTACGCGGCGGATGAGGGGTTGTTCT 120
consensus_11534#1 AGACGGGGGCCGCGGGGGCGGCGGCGACGCCGCACCACGCGGCGGATGAGGGGTTGTTCT 120
*************************** ****** ************************
consensus_11534#0 ACGAGGAGGATAAGAGGGGGGCGAAGGCGGGTGGAGTTGCTGCGGGCGGCGCGGAGGAGG 180
consensus_11534#1 ACGAGGAGGATAAAACGGGGGCGAAAGAAGTTGGAGCTGCTGCGGGCGGCACGGAGGATG 180
************* * ********* * * ***** ************* ******* *
consensus_11534#0 GGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCG 240
consensus_11534#1 AGTTGGA----------------------------------------------------- 187
******
consensus_11534#0 GCATAACCAAGCTGTTCCCAATCCAGAGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGG 300
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 ACATGGTTGGTCGTGCCAAAACAGGTACAGGAAAGACTTTGGCTTTTGGAATCCCCATAC 360
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 TGGACGCAATTATTCGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTG 420
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 TTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCA 480
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 ATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCA 540
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 ATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAG 600
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 GTGCTCTGAATCTGTCAGAGGTCCGGTTTGTTGTTCTTGATGAAGCAGACCAGATGTTGT 660
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 CAGTGGGTTTTGATGAAGATGTTGAGACAATTTTGGATAGAGTACCTCCAAAACGTCAAA 720
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 CCTTGATGTTCTCTGCGACTATGCCAACTTGGATTCAGAGACTCACCCAGAAATACCTTA 780
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 AGAATCCTGTTACAATTGACCTTGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCA 840
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 GTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTA 900
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 AGGAGCATGCAAAAGGTGGTAAATGCATTGTATTTACACAAACAAAAAGAGATGCTGATC 960
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 GATTGTCCTACACCATGGGTCGGAGTTTCCAGTGCCAGGCCCTTCATGGGGACATCACAC 1020
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 AAGCCCAAAGAGAGAGAACATTAAAAGGATTCCGTGAAGGCCATTTTAATATTTTGATTG 1080
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 CCACTGATGTTGCTGCTCGTGGTTTGGATATCCCAAATGTAGACTTGGTGATACATTTTG 1140
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 AATTGCNCAACTCCTCGGAATTGTTTGTTCACAGGTCTGGCCGAACTGGCCGTGCTGGAA 1200
consensus_11534#1 ------------------------------------------------------------
consensus_11534#0 AGAAGGGTAAGGCAATTGTTATGCACAG 1228
consensus_11534#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||