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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1210 fasta sequence
[CACACGCACTCGTACACATATACTGCAAATTAAAAAGCTAGCTTAGCCATGGCACGTAGCCTCTCGTTGCTGCTACTCCTCGTCGCGTGCTTCCTCGTCGCCGGCGCCACCGCGGCTCGCCCGGCGCCGTCGACGAGCGGCGCCGCCGCCA-TCAGCAGCTTCGTGAGGTCGTGGTGCGCGGGGACGAAGTACCCCGCCCTGTGCGACGCGACGCTGGCGCCGTACTCGGCGGCGGTGGGGGCGAGCCCGGCGAAGCTGGCGTGGGCGGCGCTGACGGTCACCCTCAGCGCCGCCCGCAACGCGACGTCGGCGGTGAGGTCCATCGCGGCGAGGTCGTCGTCGTCCCATCTCCCGCCCGTGGCGGCGGAGGCGGCCGGGGACTGCGCCAGCGAGCTCGGCGACGGCGTGGACGCGCTGCGGCGGTGCGTGGACGCCATGGCCCGCGTCGCCGTCGGCGAGGAGTCGTCGTCGACGGCGGCGGCGGTGAGGAGGAAGGTGAGGTTCGAGGTGGACAACGTGCGGACGTGGGCCAGCGCGGCGCTCACCGACGACAACATGTGCATGGAAGGGTTCAAGGGGGAGGCCGCCGGCGGCGGCGGCGCCAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCAAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTACGTCGAGCACAAGCACAGCACAGCAACAGGGTGAGAAAAGATCTCTTGATGTGTTCAACGAAAAGAACAAAAACGTCTCATGTATCAGGCACAAATATCTGCAGAGTGCATAAGCAAAGCACAGACTGAAGTTGATTTGGTTCTTAGGACAATTAATGTGAAGGGCTGAAGGCAATAATGCAAGTCGATCTACTGCTAAACCACAGGAGCACAACACAATAGATAGACAAAGTTAGTTATGAGTCACAGTCAGAAATCAGAATAATGCATGCCAACATGCATGGTAGATTGGTAGTACACTCAAAGTTGTCCATGGAATTGTTGCCATCCTTTGTGTAATAGTGTAGGTAAGGCTTAAACTGATCATTTGTGTGCACACTGGTGCTGCATTGTACTTGACTGTTAGTACTTAGTAGAGTCTATTACCTTCAGCTGTCTTTGCTGAGAACATCAGGCCCCAGAGCGAG]
[+] EMBL AK060639 [CACACGCACTCGTACACATATACTGCAAATTAAAAAGCTAGCTTAGCCATGGCACGTAGCCTCTCGTTGCTGCTACTCCTCGTCGCGTGCTTCCTCGTCGCCGGCGCCACCGCGGCTCGCCCGGCGCCGTCGACGAGCGGCGCCGCCGCCA TCAGCAGCTTCGTGAGGTCGTGGTGCGCGGGGACGAAGTACCCCGCCCTGTGCGACGCGACGCTGGCGCCGTACTCGGCGGCGGTGGGGGCGAGCCCGGCGAAGCTGGCGTGGGCGGCGCTGACGGTCACCCTCAGCGCCGCCCGCAACGCGACGTCGGCGGTGAGGTCCATCGCGGCGAGGTCGTCGTCGTCCCATCTCCCGCCCGTGGCGGCGGAGGCGGCCGGGGACTGCGCCAGCGAGCTCGGCGACGGCGTGGACGCGCTGCGGCGGTGCGTGGACGCCATGGCCCGCGTCGCCGTCGGCGAGGAGTCGTCGTCGACGGCGGCGGCGGTGAGGAGGAAGGTGAGGTTCGAGGTGGACAACGTGCGGACGTGGGCCAGCGCGGCGCTCACCGACGACAACATGTGCATGGAAGGGTTCAAGGGGGAGGCCGCCGGCGGCGGCGGCGCCAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCAAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTACGTCGAGCACAAGCACAGCACAGCAACAGGGTGAGAAAAGATCTCTTGATGTGTTCAACGAAAAGAACAAAAACGTCTCATGTATCAGGCACAAATATCTGCAGAGTGCATAAGCAAAGCACAGACTGAAGTTGATTTGGTTCTTAGGACAATTAATGTGAAGGGCTGAAGGCAATAATGCAAGTCGATCTACTGCTAAACCACAGGAGCACAACACAATAGATAGACAAAGTTAGTTATGAGTCACAGTCAGAAATCAGAATAATGCATGCCAACATGCATGGTAGATTGGTAGTACACTCAAAGTTGTCCATGGAATTGTTGCCATCCTTTGTGTAATAGTGTAGGTAAGGCTTAAACTGATCATTTGTGTGCACACTGGTGCTGCATTGTACTTGACTGTTAGTACTTAGTAGAGTCTATTACCTTCAGCTGTCTTTGCTGAGAACATCAGGCCCCAGAGCGAG]
[+] EMBL CF326372 [ CTCGTACACATATACTGCAAATTAAAAAGCTAGCTTAGCCATGGCACGTAGCCTCTCGTTGCTGCTACTCCTCGTCGCGTGCTTCCTCGTCGCCGGCGCCACCGCGGCTCGCCCGGCGCCGTCGACGAGCGGCGCCGCCGCCA TCAGCAGCTTCGTGAGGTCGTGGTGCGCGGGGACGAAGTACCCCGCCCTGTGCGACGCGACGCTGGCGCCGTACTCGGCGGCGGTGGGGGCG ]
[+] EMBL OSS4393A [ ACACATATACTGCAAATTAAAAAGCTAGCTTAGCCATGGCACGTAGCCTCTCGTTGCTGCTACTCCTCGTCGCGTGCTTCCTCGTCGCCGGCGCCACCGCANNTCGCCCGGNGCCGTCGACGAGCGGCG CGCCGANATTCAGCAGCTTCGTGAGGTCGTGGTGCGCGGGGACGAAGTACCCCGCCCTGTGCGACGCGACGNTGGCGCCGTACTCGGCGGCGGTGGGGGCGAGCCCGGCGA ]
[+] EMBL CF324867 [ AATTAAAAAGCTAGCTTAGCCATGGCACGTAGCCTCTCGTTGCTGCTACTCCTCGTCGCGTGCTTCCTCGTCGCCGGCGCCACCGCGGCTCGCCCGGCGCCGTCGACGAGCGGCGCCGCCGCCA TCAGCAGCTTCGTGAGGTCGTGGTGCGCGGGGACGAAGTACCCCGCCCTGTGCGACGCGACGCTGGCGCC ]
consensusID : consensus_11546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence
[GACCCATGGCCCGCTTCCCTCGGCGAGGATCTTCAGTCGACGCGGCGCGGCGAGGAGGAAGTGAGTTTCGAGGTGGACAACGTGCGGACGTGGGCCAGCCGGCGCTCACCGACGACACATGTGCATGGAAAGGGTTCAAGGGGGAGCCGCCAGGCGGCGGCGGCGCACAGGGAGGCCGTCCGCGCCACATCATGGCCTCCTCCACCTCACCGCCAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTACGTCGAGGTATGCATACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATACCATTTTGTTCTTCTGTGTACATTCACATACACCATGGCATGATGAACGGGCATAATGTTATTCCTCCAAAAAAAAAA]
[+] EMBL BI809774 [GACCCATGGCCCGCTTCCCTCGGCGAGGATCTTCAGTCGACGCGGCGCGGCGAGGAGGAAGTGAGTTTCGAGGTGGACAACGTGCGGACGTGGGCCAGCCGGCGCTCACCGACGACACATGTGCATGGAAAGGGTTCAAGGGGGAGCCGCCAGGCGGCGGCGGCGCACAGGGAGGCCGTCCGCGCCACATCATGGCCTCCTCCACCTCACCGCCAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTACGTCGAGGTATGCATACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATACCATTTTGTTCTTCTGTGTACATTCACATACACCATGGCATGATGAACGGGCATAATGTTATTCCTCCAAAAAAAAAA]
consensusID : consensus_11546#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 332 fasta sequence
[GACAACATGTGCATGGAAGGGTTCAAGGGGGATGTCNGCCGGCTNCGGCGG-CGCCAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCAAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTACGTCGAGGTATGCATACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATACCATTTTGTTCTTCTGTGTAAAAAAAAAAAAAAAAAAAAATCTAGACGAGTTCT]
[+] EMBL AU101998 [GACAACATGTGCATGGAAGGGTTCAAGGGGGATGTCNGCCGGCTNCGGCGG CGCCAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCNTCCACCTCACCGCAAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTANGTCGAGGTATGCATACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGGTTTGCGTGCATATATATACCATTTTGTTCTTCTGTGTAAAt ]
[+] EMBL CF195893 [ gaggccGCCGGCGGCGGCGG CGCCAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCCAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCNGTGACATACATACCCATGTACGTACGTCGAGGTATGCATACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATACCATTTTGTTCTTCTGTGTAAAAAAAAA ]
[+] EMBL AU097346 [ GCGGTCGCCAGGGA GCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCAAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTACGTCGAGGTATGCATACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATACCATTTTGTTCTTCTGTGTAAAAAA ]
[-] EMBL CF324997 [ CATGGGCTTCTTCCACCTCACAGCAAACGCGCTAGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAAATAACTCAGTGACATACATACCCATGTACGTACGTAGAGGTATGCAAACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGGGTGCATATATATACCATTTTGTTATTCTGTGTAAAAAAAAAAAAAAAAAAAAATCTAGACGAGTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11546#1 ------------------------------------------------------------
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 CACACGCACTCGTACACATATACTGCAAATTAAAAAGCTAGCTTAGCCATGGCACGTAGC 60
consensus_11546#1 ------------------------------------------------------------
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 CTCTCGTTGCTGCTACTCCTCGTCGCGTGCTTCCTCGTCGCCGGCGCCACCGCGGCTCGC 120
consensus_11546#1 ------------------------------------------------------------
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 CCGGCGCCGTCGACGAGCGGCGCCGCCGCCATCAGCAGCTTCGTGAGGTCGTGGTGCGCG 180
consensus_11546#1 ------------------------------------------------------------
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 GGGACGAAGTACCCCGCCCTGTGCGACGCGACGCTGGCGCCGTACTCGGCGGCGGTGGGG 240
consensus_11546#1 ------------------------------------------------------------
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 GCGAGCCCGGCGAAGCTGGCGTGGGCGGCGCTGACGGTCACCCTCAGCGCCGCCCGCAAC 300
consensus_11546#1 ------------------------------------------------------------
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 GCGACGTCGGCGGTGAGGTCCATCGCGGCGAGGTCGTCGTCGTCCCATCTCCCGCCCGTG 360
consensus_11546#1 ------------------------------------------------------------
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 GCGGCGGAGGCGGCCGGGGACTGCGCCAGCGAGCTCGGCGACGGCGTGGACGCGCTGCGG 420
consensus_11546#1 ----------GACCCATGGCCCGCTTCCC--TCGGCGAGGATCTTCAGTCGACGCGGC-- 46
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 CGGTGCGTGGACGCCATGGCCCGCGTCGCCGTCGGCGAGGAGTCGTCGTCGACGGCGGCG 480
consensus_11546#1 GCGGCGAGGAGGAAG-TGAGTTTCGAGGTGGACAACGTGCGGACGTGGGCCAGC-CGGCG 104
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 GCGGTGAGGAGGAAGGTGAGGTTCGAGGTGGACAACGTGCGGACGTGGGCCAGCGCGGCG 540
consensus_11546#1 CTCACCGACGACAC-ATGTGCATGGAAAGGGTTCAAGGGGGA-GCCGCCAGGCGGCGGCG 162
consensus_11546#2 ------GACAACA---TGTGCATGGAA-GGGTTCAAGGGGGATGTCNGCCGGCTNCGGCG 50
consensus_11546#0 CTCACCGACGACAACATGTGCATGGAA-GGGTTCAAGGGGGA-GGCCGCCGGCGGCGGCG 598
*** *** *********** ************** * * * *** *****
consensus_11546#1 GCGCACAGGGAGGCCGTCCGCG-CCACATCATGG-CCTCCTCCACCTCACCGCCAACGCG 220
consensus_11546#2 GCGC-CAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCAAACGCG 109
consensus_11546#0 GCGC-CAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCAAACGCG 657
**** ***************** *********** ****************** ******
consensus_11546#1 CTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACT 280
consensus_11546#2 CTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACT 169
consensus_11546#0 CTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACT 717
************************************************************
consensus_11546#1 CAGTGACATACATACCCATGTACGTACGTCGAG-GTATGCATA---------CTGGATAT 330
consensus_11546#2 CAGTGACATACATACCCATGTACGTACGTCGAG-GTATGCATA---------CTGGATAT 219
consensus_11546#0 CAGTGACATACATACCCATGTACGTACGTCGAGCACAAGCACAGCACAGCAACAGGGTGA 777
********************************* * *** * * ** *
consensus_11546#1 ATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATAC 390
consensus_11546#2 ATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATAC 279
consensus_11546#0 GAAAAGATCTCTTG-ATGTGTTCAACGAAAAGAACAAAAACGTCTCATGTAT-CAGGCAC 835
* *** * * **** * * * * *** * * * ** ** * **
consensus_11546#1 CATTTTGTTCTTCTGTGTACATTCACATACACCATGGCATGATGAACGGGCATAATGTTA 450
consensus_11546#2 CATTTTGTTCTTCTGTGTAAAAAAAAAAAAAAAAAAAAATC-TAGACGAGTTCT------ 332
consensus_11546#0 AAATATCTGCAGA-GTGCATAAGCAAAGCACAGACTGAAGTTGATTTGGTTCTTAGGACA 894
* * * * * *** * * * * * * *
consensus_11546#1 TTCCTCCAAAAAAAAAA------------------------------------------- 467
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 ATTAATGTGAAGGGCTGAAGGCAATAATGCAAGTCGATCTACTGCTAAACCACAGGAGCA 954
consensus_11546#1 ------------------------------------------------------------
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 CAACACAATAGATAGACAAAGTTAGTTATGAGTCACAGTCAGAAATCAGAATAATGCATG 1014
consensus_11546#1 ------------------------------------------------------------
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 CCAACATGCATGGTAGATTGGTAGTACACTCAAAGTTGTCCATGGAATTGTTGCCATCCT 1074
consensus_11546#1 ------------------------------------------------------------
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 TTGTGTAATAGTGTAGGTAAGGCTTAAACTGATCATTTGTGTGCACACTGGTGCTGCATT 1134
consensus_11546#1 ------------------------------------------------------------
consensus_11546#2 ------------------------------------------------------------
consensus_11546#0 GTACTTGACTGTTAGTACTTAGTAGAGTCTATTACCTTCAGCTGTCTTTGCTGAGAACAT 1194
consensus_11546#1 ----------------
consensus_11546#2 ----------------
consensus_11546#0 CAGGCCCCAGAGCGAG 1210
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||