These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [GGAGCTGGAGGGCATCTGCAACCCCATCATCGCCAAGATGTACCAGGGCGCTGGCGCGGACATGGCCGGCGGCATGGACGAGGACGATGCTCCCCCGGCTGGCGGCAGCGGTGCTGGCCCCAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCTTATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACCTATGATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAATAAATTAATAAAATA] [+] EMBL BE040920 [GGAGCTGGAGGGCATCTGCAACCCCATCATCGCCAAGATGTACCAGGGCGCTGGCGCGGACATGGCCGGCGGCATGGACGAGGACGATGCTCCCCCGGCTGGCGGCAGCGGTGCTGGCCCCAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCTTATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACCTATGATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAATAAATTAATAAAATA] consensusID : consensus_1156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence [CTCCCCCGGCTGGCGGCAGCGGTGCTGGCCCCAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCTTATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACTTATGATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA] [-] EMBL CF331829 [CTCCCCCGGCTGGCGGCAGCGGTGCTGGCCCCAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCTTATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACTTATGATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1156#0 GGAGCTGGAGGGCATCTGCAACCCCATCATCGCCAAGATGTACCAGGGCGCTGGCGCGGA 60 consensus_1156#1 ------------------------------------------------------------ consensus_1156#0 CATGGCCGGCGGCATGGACGAGGACGATGCTCCCCCGGCTGGCGGCAGCGGTGCTGGCCC 120 consensus_1156#1 -----------------------------CTCCCCCGGCTGGCGGCAGCGGTGCTGGCCC 31 ******************************* consensus_1156#0 CAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCT 180 consensus_1156#1 CAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCT 91 ************************************************************ consensus_1156#0 TATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACCTATG 240 consensus_1156#1 TATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACTTATG 151 ******************************************************* **** consensus_1156#0 ATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAATAAAT-TAATAAAATA--- 296 consensus_1156#1 ATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAAAAAAAACAATGTCATGCCG 211 ***************************************** *** *** ** consensus_1156#0 ------------------- consensus_1156#1 TTACGTAGCGTATCGTTGA 230 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||