cluster # 11562

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Oryza sativa
cluster # 11562 cluster # 11562 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11562#0 length = 872 sequences # 8

consensus_11562#1 length = 374 sequences # 1

consensusID : consensus_11562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 872
fasta sequence

                              [AGAAAAGCATAGGAAATAAAGTAAAGGGAGGAGAGGACAAGGAACTCCTTCCGGCTCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAA-CAGGCGACGA-CGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGCTGCATGGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTACAAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCAT-CAAATTGAGTTATAGAAGATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCA-TTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCA-TTGATCTATAGGTACATCTTATTTGTCCA-TGAGCTTCTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGCAGGGCATCTCTCTGTTCTTTGTAACACAACAATGGATTCTGTCGTATACTAATGTATTTTTGCTG-CAAGAAATGCATGCACGCAGTTTCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCAGCCGTTACGTAGCG]

[+] EMBL AK071581             [AGAAAAGCATAGGAAATAAAGTAAAGGGAGGAGAGGACAAGGAACTCCTTCCGGCTCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAA CAGGCGACGA CGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGCTGCATGGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTACAAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCAT CAAATTGAGTTATAGAAGATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCA TTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCA TTGATCTATAGGTACATCTTATTTGTCCA TGAGCTTCTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGCAGGGCATCTCTCTGTTCTTTGTAACACAACGATGGATTCTGTCGTATACTAATGTATTTTTGCTG CAAGAAATGCATGCA                                                                     ]
[+] EMBL AK119260             [                                                   CGGCTCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAA CAGGCGACGA CGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGCTGCATGGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTACAAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCAT CAAATTGAGTTATA AAGATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCA TTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCA TTGATCTATAGGTACATCTTATTTGTCCA TGAGCTTCTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGCAGGGCATCTCTCTGTTCTTTGTAACACAACAATGGATTCTGTCGTATACTAATGTA                                                                                              ]
[+] EMBL CF282345             [                                                       TCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAA CAGGCGACGA CGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGCTGCATAGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTACAAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCAT CAAATTGAGTTATAGAAGATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTAT                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU029354             [                                                                                                                                                                                                       GGGAAACCAGGCACCGACCGAGAAGAGAGNATCAGCTGGGGGTGATGAATTGTTACGCTGCATGGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTACAAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCAT CAAATTGAGTTATAGAAGATTAGCTTTGATGTGGCANCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCA TTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCA TTGATCTATAGGTACATCTTATTTGTCCA TGAGCTTCTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGCAGGGCATCTCTCTGTTCTTTGTAACACAACAATGGATTCTGTCGTATACTAATGTATTTTTGCTG CAAGAAATGCATGCACGCNGTTTCCAAAAAAAAAAAAAAA                                            ]
[-] EMBL CF282344             [                                                                                                                                                                                                                                                                                                                      GGAGGTTGATTACGATGCATCCGATGACACCATCCAAATTGAGTTATAGAAGATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTTTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCA TTTTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCA TTGATCTATAGGTACATTTTATTTGTCCA TGAGCTTTTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACT TGGATACGGCAGGGCATCTCTTTGTTTTTTGTAACCCAACAATGGATTCTGTCGTATACTAATGTATTTTTGCTG CAAAAAATGCATGCACGCAGTTTCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCAGCCGTTACGTAGCG]
[-] EMBL CF281816             [                                                                                                                                                                                                                                                                                                                                           CGATGACACCAT CAAATTTAGTTATAGAAGATGAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGCAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGTTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTTCAAGGTTTAAGGGTATGATAGTTACCTGCAATGGTCTGGGCATAGCCCA TTGTTCAAAATGGGTCCGGCATGTTATGGAATTGAAGCCCCA TTAATCTATAGGTACATCTTATTTGTCCA TGAGCTTCTTCAGTACATTCTTTAAGGCCAATTGGATGCTTAGATGTTTCTTTTAACACAACTATGTATACGGCAGGGCATCTCTCTGTTCTTTGGAACCCCACAATGGATTCTGTCGTATACTAATGTATTTTTGCTG CAAAAAAaa                                                                           ]
[+] EMBL BM420338             [                                                                                                                                                                                                                                                                                                                                                                                          CATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGC CCTTGAATATGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCACTTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCACTTGATCTATAGGTACATCTTATTTGTCCACTGAGCTTCTTCAGTACTT  TTTGAGGCCNATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGCAGGGCATCTCTCTGTTCTTTGTAACAC AC ATGGATTCTGTCGTATACTAATGTATTTTTGCTGCCAAGAAATGCATGC CCCAGTTTCCAGATGTAAAAAAAAAA                                           ]
[+] EMBL AK105032             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCA TTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCA TTGATCTATAGGTACATCTTATTTGTCCA TGAGCTTCTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGCAGGGCATCTCTCTGTTCTTTGTAACACAACAATGGATTCTGTCGTATACTAATGTATTT                                                                                           ]




>consensus_11562#0
AGAAAAGCATAGGAAATAAAGTAAAGGGAGGAGAGGACAAGGAACTCCTTCCGGCTCCGA
TCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCC
TCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGC
GCGCGGCGGACACGAGGAAGGGAAACAGGCGACGACGAGAAGAGAGGATCAGCTGGGGGT
GATGAATTGTTACGCTGCATGGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTAC
AAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCATCAAATTGAGTTATAGAAGA
TTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTT
CAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGAC
CTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAG
GGTATGATACTTACCTGCAATGGTCTTGGCATAGACCATTCTTCAAAATGGGCCCGGCAT
TTGAGGGAATTGGAGCCCCATTGATCTATAGGTACATCTTATTTGTCCATGAGCTTCTTC
AGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATAC
GGCAGGGCATCTCTCTGTTCTTTGTAACACAACAATGGATTCTGTCGTATACTAATGTAT
TTTTGCTGCAAGAAATGCATGCACGCAGTTTCCAGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAACACTGTCAGCCGTTACGTAGCG

consensusID : consensus_11562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [NGNATCGGTGGGNCGGACGGTGGGCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAACAGGCGACGACGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGNTGCATGGACGGAGCAAGCGAGAAGCTCCCCACAAGGCTATTACAAAGTTCTTGAGGTTGATTACGATGCATCCGATGACAACATCAAATTGAGTTATAGAAGATTAGTTTTATGTGGCATCCAGACAAGATAAGGGGTTATNATGTACAGT]

[+] EMBL C74038               [NGNATCGGTGGGNCGGACGGTGGGCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAACAGGCGACGACGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGNTGCATGGACGGAGCAAGCGAGAAGCTCCCCACAAGGCTATTACAAAGTTCTTGAGGTTGATTACGATGCATCCGATGACAACATCAAATTGAGTTATAGAAGATTAGTTTTATGTGGCATCCAGACAAGATAAGGGGTTATNATGTACAGT]




>consensus_11562#1
NGNATCGGTGGGNCGGACGGTGGGCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCC
TCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAA
GCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAACAGGCGA
CGACGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGNTGCATGGACGGAGCAAG
CGAGAAGCTCCCCACAAGGCTATTACAAAGTTCTTGAGGTTGATTACGATGCATCCGATG
ACAACATCAAATTGAGTTATAGAAGATTAGTTTTATGTGGCATCCAGACAAGATAAGGGG
TTATNATGTACAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11562#0      AGAAAAGCATAGGAAATAAAGTAAAGGGAGGAGAGGACAAGGAACTCCTTCCG-GCTCCG 59
consensus_11562#1      ---------------------------------NGNATCGGTGGGNCGGACGGTGGGCCG 27
                                                         * *   *     *   * * *  ***

consensus_11562#0      ATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCC 119
consensus_11562#1      ATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCC 87
                       ************************************************************

consensus_11562#0      CTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACG 179
consensus_11562#1      CTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACG 147
                       ************************************************************

consensus_11562#0      CGCGCGGCGGACACGAGGAAGGGAAACAGGCGACGACGAGAAGAGAGGATCAGCTGGGGG 239
consensus_11562#1      CGCGCGGCGGACACGAGGAAGGGAAACAGGCGACGACGAGAAGAGAGGATCAGCTGGGGG 207
                       ************************************************************

consensus_11562#0      TGATGAATTGTTACGCTGCATGGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTA 299
consensus_11562#1      TGATGAATTGTTACGNTGCATGGACGGAGCAAGCGAGAAGC-TCCCCACAAGG-CTATTA 265
                       *************** ************************* *********** ******

consensus_11562#0      CAAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCATCAAATTGAGTTATAGAAG 359
consensus_11562#1      CAAAGTTCTTGAGGTTGATTACGATGCATCCGATGACAACATCAAATTGAGTTATAGAAG 325
                       ********* **************************** *********************

consensus_11562#0      ATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATT 419
consensus_11562#1      ATTAGTTTT-ATGTGGCATCCAGACAAG-ATAAGGGG--TTATNATGT-ACAGT------ 374
                       ***** *** ****************** ********  * ** **** ****       

consensus_11562#0      TCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGA 479
consensus_11562#1      ------------------------------------------------------------
                                                                                   

consensus_11562#0      CCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAA 539
consensus_11562#1      ------------------------------------------------------------
                                                                                   

consensus_11562#0      GGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCATTCTTCAAAATGGGCCCGGCA 599
consensus_11562#1      ------------------------------------------------------------
                                                                                   

consensus_11562#0      TTTGAGGGAATTGGAGCCCCATTGATCTATAGGTACATCTTATTTGTCCATGAGCTTCTT 659
consensus_11562#1      ------------------------------------------------------------
                                                                                   

consensus_11562#0      CAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATA 719
consensus_11562#1      ------------------------------------------------------------
                                                                                   

consensus_11562#0      CGGCAGGGCATCTCTCTGTTCTTTGTAACACAACAATGGATTCTGTCGTATACTAATGTA 779
consensus_11562#1      ------------------------------------------------------------
                                                                                   

consensus_11562#0      TTTTTGCTGCAAGAAATGCATGCACGCAGTTTCCAGAAAAAAAAAAAAAAAAAAAAAAAA 839
consensus_11562#1      ------------------------------------------------------------
                                                                                   

consensus_11562#0      AAAAAAAAAAACACTGTCAGCCGTTACGTAGCG 872
consensus_11562#1      ---------------------------------