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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11574#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 991 fasta sequence
[CTCCTCCTCCGCTCCTTTGCGCCGCCGCCAACACACAGGGCAGGGCGCGCCGATCTCCATCTGGCGAGCAGAGAAGGGGAGGGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACCACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAACTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCAGTAACCTCCCTAAATGCTACAAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAGAAGAAAC-TGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATC-TGCACACCGAAGCAAAAC-TGAAC-TGCAAATCGAAGCAAGC-TTTAGTGCAACGG-GAGGC-TGCCCAAC-TGAATGCT-GTGC-TGA-CCAATCCGCAG-TTCCAGCTCGACCCGTTTGCGGCGATCCATCAGCACCTGTTGTCAACACAGCCACCCTCTGCGAGAAAGGAGAGCAATTCCGCCAAGCAGGGGAAGGACCCTAAGGACAAGAAAAGAAAGAACAAGAAGAAGAATGCTTCATCGGCCTCCGAGGCAATGGATATCTGATATGGCAAAGTACCCTACCAAAGGAATGGGGCGCAATTATCGTC-AACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTTGTCAAATTCT-GTTTCAGCATCGGCACTCTCCTCCCAGAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGCGTCGGCTCTC-CTCAGG-TTTTTTTTTTGAC-GGAAAAACAGTTGGAGAGGCTCCTACTGC-AATATATTACTTGAGTGTACAAGAGACTTTACCTCCTCCCAGCGAACTGCTTGTAGCGTGGCTGAAGTTTCTTTGTGCTGATTTGTACATATGATGTTTATGATGTTTTGGTTAATTGTTCATGTACCTGGTTCTCGCCAAAAAAAAAAAAAAAAAA]
[+] EMBL CF277625 [CTCCTCCTCCGCTCCTTTGCGCCGCCGCCAACACACAGGGCAGGGCGCGCCGATCTCCATCTGGCGAGCAGAGAAGGGGAGGGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACCACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAACTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCAGTAACCTCCCTAAATGCTACAAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAGAAGAAAC TGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATC TGCACACCGAAGCAAAAC TGAAC TGCAAATCGAAGCAAGC TTTANTGCAACGG GAGGC TGCCCAAC TGAATGCT GTGC TGA CCAATCCGCAG TTCCAGCTC ]
[+] EMBL AK102026 [ CTCCTCCGCTCCTTTGCGCCGCCGCCAACACACAGGGCAGGGCGCGCCGATCTCCATCTGGCGAGCAGAGAAGGGGAGGGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACCACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAACTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCAGTAACCTCCCTAAATGCTACAAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAGAAGAAAC TGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATC TGCACACCGAAGCAAAAC TGAAC TGCAAATCGAAGCAAGC TTTAGTGCAACGG GAGGC TGCCCAAC TGAATGCT GTGC TGA CCAATCCGCAG TTCCAGCTCGACCCGTTTGCGGCGATCCATCAGCACCTGTTGTCAACACAGCCACCCTCTGCGAGAAAGGAGAGCAATTCCGCCAAGCAGGGGAAGGACCCTAAGGACAAGAAAAGAAAGAACAAGAAGAAGAATGCTTCATCGGCCTCCGAGGCAATGGATATCTGATATGGCAAAGTACCCTACCAAAGGAATGGGGCGCAATTATCGTC AACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTTGTCAAATTCT GTTTCAGCATCGGCACTCTCCTCCCAGAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGCGTCGGCTCTC CTCAGG TTTTTTTTTTGAC GGAAAAACAGTTGGAGAGGCTCCTACTGC AATATATTACTTGAGTGTACAAGAGACTTTACCTCCTCCCAGCGAACTGCTTGTAGCGTGGCTGAAGTTTCTTTGTGCTGATTTGTACATATGATGTTTATGATGTTTTGGTTAATTGTTCATGTACCT ]
[+] EMBL CF278857 [ CTCCGCTCCTTTGCGCCGCCGCCAACACACAGGGCAGGGCGCGCCGATCTCCATCTGGC AGCAGAGAA GGGA GGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACCACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAACTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCAGTAACCTCCCTAAATGCTACAAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAGAAGAAAC TGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATC TGCACACCGAAGCAAAAC TGAAC TGCAAATCGAAGCAAGC TTTAGTGCAACGG GAGGC TGCCCAAC TGAATGCT GTGC TGA CCAATCCGCAG TTCCAGCTCGACCCGTTTGCGGCGATCCATCAGCACCTGTTGTCAACACAGCCACCCTCTGCGAGAAAGGAGAGCAATTCCGCCAAGCAGGG ]
[+] EMBL AU032344 [ TTTGCGCCGCCGCCAACACACAGGGCAGGGCGCGCCGATCTCCATCTGGCGAGCAGAGAAGGGGAGGGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACCACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAACTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCAGTAACCTCCCTAAATGCTACNAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAGAAGAAAC TGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATCTTGCACACCGAGGCAAAACTTGAACTTGNAAATCGAAGCAAGCNTTTAGTGCAAGGG GAGGT NGCCCAAC TGAAAGCTGGTTN TGACCCAAT ]
[+] EMBL C73854 [ GGGCGCGCCGATCTCCATCTGGCGAGCAGAGAAGGGGAGGGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACCACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAACTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCAGTAACCTCCCTAAATGCTACAAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAGAAGAAACTTGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATC TGCACACCGAAGCAAAACTTGAAC TGCAAATCGAGGCAAGC TTTAGTGCAACGGNGAGGCTTGCCCAACTTGAATGCT GTGCTTGA CCAATCCGCAGTTTCCAGNTCGACCCGTTTNCGGCGATCCATtaa ]
[+] EMBL CF331760 [ gagtagaaATGACCTTTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATC TGCACACCGAAGCAAAAC TGAAC TGCAAATCGAAGCAAGC TTTAGTGCAACGG GAGGC TGCCCAAC TGAATGCT GTGC TGA CCAATCCGCAG TTCCAGCTCGACCCGTTTGCGGCGATCCATCAGCACCTGTTGTCAACACAGCCACCCTCTGCGAGAAAGGAGAGCAATTCCGCCAAGCAGGGGAAGGACCCTAAGGACAAGAAAAGAAAGAACAAGAAGAAGAATGCTTCGTCGGCCTCCGAGGCAATGGATATCTGATATGGCAAAGTACCCTACCAAAGGAATGGGGCGCAATTATCGTC AACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTTGTCAAATTCT GTTTCAGCATCGGCACTCTCCTCCCAGAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGCGTCGGCTCTC CTCAGGTTTTTTTTTTTGAC GGAAAAACAGTTGGAGAGGCTCCTACTGC AATATATTACT ]
[+] EMBL AU172755 [ AAAAGAAAGANCAAGAAGAAGAATGCTTCATCGGCCTCCGAGGCAATGGATATNTGATATGGCAAAGTACCCTACCAAAGGAATGGGGCGCAATTATCGTC AACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTTGTCAAATTNT GTTTCAGCATCGGCACTCTCCTCCCAAAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGCGTCGGCTCTC NTCAGG TTTTTTTTTTGAC GGAAAAACAGTTGGANAGGCTCCTACTGC AATATATTACTTGAGTGTACAAAANACTTTACCTCCTCCCAGCGAACTGCTTGTAGCGTGGCTGAAGTTTCTTTGTGCTGATTTGNACATATGATGTTTATGATGTTTTGGTTAATTGTTCATGTACCTGGTTCTCGCCAAAAAAAAAAAAAAAAAA]
[+] EMBL BI797460 [ aAAAGGAATGGGGCCCAATTATCGTCAAACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTGGTCAAATTCTGGTTTCAGCATC GCACTCTCCTCCCAGAGGTGTGA GTTGGGTCAAATTTTGTTTCAGCGTCGGCTCTCACTCAGG TTTTTTTTTTGACAGGAAAAACA TTGGAGAGGCTCCTACTGCAAATATATTACTTGAGTGTACAAGAGACTTTACCTCCTCCCAGCGAACTGCTTGTAGCGTGGCTGAAGTTTCTTTGTGCTGATTTGTACATATGATGTTTATGATGTTTTGGTTAATTGTTCATGTACCTGGTTCTCGCCAAAAAAA ]
consensusID : consensus_11574#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence
[ATTCCGCCAAGCAGGGGAAGGGCCCTAAGGGCAAGAAAAGAAAGAACCAGAAGAAGAATGGTTTGTCGGCCTCCGAGGCAATGGATATTTGATATGGCAAAGTACCCTACCAAAGGAATGGGGGGCAATTATTGTCAACCTCAGTTTGAAATTGTGTGATTTTTTAAACCTTGTCAAATTTTGTTTTAGCATTGGCACTTTCCTCCCAAAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGGGTCGGGTTTCCTCAGGTTTTTTTTTTTGACGGAAAAACAGTTGGAAAGGGTCCTACTGCAATATATTACTTGAGTGGACAAAAGACTTTACCTCCTCCCAACGAACTGGTTGTAGGGTGGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF331759 [ATTCCGCCAAGCAGGGGAAGGGCCCTAAGGGCAAGAAAAGAAAGAACCAGAAGAAGAATGGTTTGTCGGCCTCCGAGGCAATGGATATTTGATATGGCAAAGTACCCTACCAAAGGAATGGGGGGCAATTATTGTCAACCTCAGTTTGAAATTGTGTGATTTTTTAAACCTTGTCAAATTTTGTTTTAGCATTGGCACTTTCCTCCCAAAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGGGTCGGGTTTCCTCAGGTTTTTTTTTTTGACGGAAAAACAGTTGGAAAGGGTCCTACTGCAATATATTACTTGAGTGGACAAAAGACTTTACCTCCTCCCAACGAACTGGTTGTAGGGTGGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11574#0 CTCCTCCTCCGCTCCTTTGCGCCGCCGCCAACACACAGGGCAGGGCGCGCCGATCTCCAT 60
consensus_11574#1 ------------------------------------------------------------
consensus_11574#0 CTGGCGAGCAGAGAAGGGGAGGGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACC 120
consensus_11574#1 ------------------------------------------------------------
consensus_11574#0 ACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAA 180
consensus_11574#1 ------------------------------------------------------------
consensus_11574#0 CTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCA 240
consensus_11574#1 ------------------------------------------------------------
consensus_11574#0 GTAACCTCCCTAAATGCTACAAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAG 300
consensus_11574#1 ------------------------------------------------------------
consensus_11574#0 AAGAAACTGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCC 360
consensus_11574#1 ------------------------------------------------------------
consensus_11574#0 TCAAATCTGCACACCGAAGCAAAACTGAACTGCAAATCGAAGCAAGCTTTAGTGCAACGG 420
consensus_11574#1 ------------------------------------------------------------
consensus_11574#0 GAGGCTGCCCAACTGAATGCTGTGCTGACCAATCCGCAGTTCCAGCTCGACCCGTTTGCG 480
consensus_11574#1 ------------------------------------------------------------
consensus_11574#0 GCGATCCATCAGCACCTGTTGTCAACACAGCCACCCTCTGCGAGAAAGGAGAGCAATTCC 540
consensus_11574#1 -------------------------------------------------------ATTCC 5
*****
consensus_11574#0 GCCAAGCAGGGGAAGGACCCTAAGGACAAGAAAAGAAAGAACAAGAAGAAGAATGCTTCA 600
consensus_11574#1 GCCAAGCAGGGGAAGGGCCCTAAGGGCAAGAAAAGAAAGAACCAGAAGAAGAATGGTTTG 65
**************** ******** **************** ************ **
consensus_11574#0 TCGGCCTCCGAGGCAATGGATATCTGATATGGCAAAGTACCCTACCAAAGGAATGGGGCG 660
consensus_11574#1 TCGGCCTCCGAGGCAATGGATATTTGATATGGCAAAGTACCCTACCAAAGGAATGGGGGG 125
*********************** ********************************** *
consensus_11574#0 CAATTATCGTCAACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTTGTCAAATTCTGTT 720
consensus_11574#1 CAATTATTGTCAACCTCAGTTTGAAATTGTGTGATTTTTTAAACCTTGTCAAATTTTGTT 185
******* ******************* ******* * ***************** ****
consensus_11574#0 TCAGCATCGGCACTCTCCTCCCAGAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGCGTCG 780
consensus_11574#1 TTAGCATTGGCACTTTCCTCCCAAAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGGGTCG 245
* ***** ****** ******** ******************************* ****
consensus_11574#0 GCTCTCCTCAGGTTTTTTTTTT-GACGGAAAAACAGTTGGAGAGGCTCCTACTGCAATAT 839
consensus_11574#1 GGTTTCCTCAGGTTTTTTTTTTTGACGGAAAAACAGTTGGAAAGGGTCCTACTGCAATAT 305
* * ****************** ****************** *** **************
consensus_11574#0 ATTACTTGAGTGTACAAGAGACTTTACCTCCTCCCAGCGAACTGCTTGTAGCGTGGCTGA 899
consensus_11574#1 ATTACTTGAGTGGACAAAAGACTTTACCTCCTCCCAACGAACTGGTTGTAGGGTGGGTGA 365
************ **** ****************** ******* ****** **** ***
consensus_11574#0 AGTTTCTTTGTGCTGATTTGTACATATGATGTTTATGATGTTTTGGTTAATTGTTCATGT 959
consensus_11574#1 AAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------- 392
* * * * *
consensus_11574#0 ACCTGGTTCTCGCCAAAAAAAAAAAAAAAAAA 991
consensus_11574#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||