cluster # 11598

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Oryza sativa
cluster # 11598 cluster # 11598 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11598#0 length = 598 sequences # 8

consensus_11598#1 length = 431 sequences # 1

consensusID : consensus_11598#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 598
fasta sequence

                              [TTTTAGGAAAGGGAAAACAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCACAAGCAATTAGGATTGGATGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACAT-CGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT-CGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAGG]

[-] EMBL CF322069             [TTTTAGGAAAGGGAAAACAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCACAAGCAATTAGGATTGGATGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACATtttctactc                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL C97679               [                                                                                                                              TTTTTTTTTTTTTTTTTTTTTTTAGANAGCACAAGCAATTAGGNTTGGATGTTCTGATCCTGGNACATTAAATCAACAAAGANTTTAAACAT CGGTACAAGAAGCAGTGAGGNCAACTTGCACGTTTTCAGTGTACAGGCAGNTGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGGAGCAGCACTGTCAACTTCTTGTACATCTACTGANGGTTGGNCCCTTTTGCCATNGGGTCCC CCCTTTCTATCAAGCTGNATAGGGGGGGCGGCNCCCcc                                          ]
[+] EMBL CB658916             [                                                                                                                                                           CACAAGCAATTAGGATTGGATGTTCTGATCCTCGTACATTAAATCAACAAAGAATTTAAACAT CGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT CGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAG ]
[+] EMBL CB657490             [                                                                                                                                                                  AATTAGGATTGGATGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACAT CGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT CGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAG ]
[+] EMBL CA761898             [                                                                                                                                                           tttttttttTTAGGATTGGATGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACATNCGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT CGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAG ]
[+] EMBL CB634931             [                                                                                                                                                                               TGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACAT CGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT CGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATAAAACGCCGTACCCTGGAAACATTGGAG ]
[+] EMBL CB634930             [                                                                                                                                                                                              ACATTACCTTAACAAAGAATTTAAACAT CGGTACAACAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCTTATCTAACAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT CGCTCTTTTCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATAAAACGCCGTACCCTGGAAACATTGGAG ]
[-] EMBL AU166914             [                                                                                                                                                                                                                                                                                                TGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT CGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAGG]




>consensus_11598#0
TTTTAGGAAAGGGAAAACAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAA
AATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCACAAGCAATTAGGATTGGATGTTC
TGATCCTGGTACATTAAATCAACAAAGAATTTAAACATCGGTACAAGAAGCAGTGAGGTC
AACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAA
TTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTC
CCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTG
ACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTA
CATCTACTGAAGTTTGATCCTTTTTGCTATCGCTCCCACCATTACTATCATGCTGAATAG
AGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAGG

consensusID : consensus_11598#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [TTTTTTAGTGACACAAAAACGAGATAGCACAAGCAATTAGGATTGGATGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACATCGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTATCGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATA]

[-] EMBL AU166915             [TTTTTTAGTGACACAAAAACGAGATAGCACAAGCAATTAGGATTGGATGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACATCGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTATCGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATA]




>consensus_11598#1
TTTTTTAGTGACACAAAAACGAGATAGCACAAGCAATTAGGATTGGATGTTCTGATCCTG
GTACATTAAATCAACAAAGAATTTAAACATCGGTACAAGAAGCAGTGAGGTCAACTTGCA
CGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATG
ATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATG
TCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGC
TTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACT
GAAGTTTGATCCTTTTTGCTATCGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCA
GCACCCACATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11598#0      TTTTAGGAAAGGGAAAACAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAA 60
consensus_11598#1      ------------------------------------------------------------
                                                                                   

consensus_11598#0      AATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTT 120
consensus_11598#1      ------------------------------------------------------------
                                                                                   

consensus_11598#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCACAAGCAATTAGGATTGGATGTTC 180
consensus_11598#1      --------TTTTTTAGTGACACAAAAACGAGATAGCACAAGCAATTAGGATTGGATGTTC 52
                               ******  *               ****************************

consensus_11598#0      TGATCCTGGTACATTAAATCAACAAAGAATTTAAACATCGGTACAAGAAGCAGTGAGGTC 240
consensus_11598#1      TGATCCTGGTACATTAAATCAACAAAGAATTTAAACATCGGTACAAGAAGCAGTGAGGTC 112
                       ************************************************************

consensus_11598#0      AACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAA 300
consensus_11598#1      AACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAA 172
                       ************************************************************

consensus_11598#0      TTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTC 360
consensus_11598#1      TTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTC 232
                       ************************************************************

consensus_11598#0      CCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTG 420
consensus_11598#1      CCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTG 292
                       ************************************************************

consensus_11598#0      ACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTA 480
consensus_11598#1      ACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTA 352
                       ************************************************************

consensus_11598#0      CATCTACTGAAGTTTGATCCTTTTTGCTATCGCTCCCACCATTACTATCATGCTGAATAG 540
consensus_11598#1      CATCTACTGAAGTTTGATCCTTTTTGCTATCGCTCCCACCATTACTATCATGCTGAATAG 412
                       ************************************************************

consensus_11598#0      AGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAGG 598
consensus_11598#1      AGGGTGCAGCACCCACATA--------------------------------------- 431
                       *******************