cluster # 11612

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Oryza sativa
cluster # 11612 cluster # 11612 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11612#0 length = 1844 sequences # 3
consensus_11612#1 length = 1458 sequences # 4

consensus_11612#2 length = 679 sequences # 1
consensus_11612#3 length = 201 sequences # 1

consensusID : consensus_11612#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1844
fasta sequence

                              [CCAGCTCGCCATAGCTCGCCATAGGAGAGGGGATTTCGAAGCTGCTCTTGCTTAGCTGCGGCTGCNAGTNATACGGAGTAGTTCCGGTGATGGAGCGAGCGGAGGAGACGCCGAGGGCGCCGTCGACGG-G-CGTCGG-GAG-GGTGTCGATCTGGGAGTCGGTGCGCGCNTNCGGGGTGTGGGGGAAGGAGGTGGACAAGGCCGAGCTGCGGAGGCAGGTCGTCATGCACATGTACGCGCGGCGTGCGGTCGCGGCCGCCGTGAAGGCCAAGGACGAGGCCGTCGGCGTGGCGGCGGCGGCGGAGAGGGGCGAGGAGGGGGAGGTGGAGGTGGAGGTGGAGGCGGCCGTGACGCCGGTGGTGGTGTTCGTCAACTCGCGGAGCGGCGGTAGGCACGGGCCCGAGCTCAAGGTGCGGCTCCACGAGCTCATCAGCGAGGAGCAGGTCTTTGATCTCTCTGTCGTGAAGCCTTCTGATTTCATTAACTACGGGTTGGGTTGTTTGGAGAAATTGGCCGAACAAGGTGACAATTGTGCGGAGACCATTCGAAAAAAATTGAGGATTATGGTTGCTGGTGGTGATGGCACAGTTGGTTGGGTACTTGGCTGTCTCACAGATCTTTATAGGTTGAAAAGAGAACCAGTTCCACCCACAGGTATCATCCCACTTGGTACAGGAAATGATCTTGCCAGATCATTTGGATGGGGTGGCTCTTTTCCCTTTGGTTGGCGTTCAGCTGTGAAGCGTTATCTCAGCAAGGCAGCTACAGCTCCCACCTGCAGTCTTGACAGTTGGCAAGCTGTAGTTATGATGCCAGATGGAGAGATAAAAGAGTTGCCATATGCACTTAAGAAAACGGAACCTGCAGACTGCTTGGAACTTTGCCAGGAGAATGGCACTGAGTTACCTGAGAAAGCTTCTTGCTATAAAGGAGTATTCTACAACTACCTTAGCATTGGGATGGATGCCCAAGTTGCTTATGGCTTCCACCATCTTCGTGATGAAAAGCCATATCTTGCTCAAGGGCCTGTTGCAAATAAGTTGATATATGCTGGTTATAGCTGCACACAGGGGTGGTTCTGCACACCTTGTACAGCAAGCCCTCAGTTAAGGGGGCTTAAGAACATTTTGCGACTTTACATTAAAAAAAGTCAATTGTTCTGAATGGGAGCAAGTTACAATGCCTTCAAGTGTTAGATCCCTGGTGGTCTTAAATTTATACAACTACGGCAGTGGAAGGCATCCATGGGGTGATCTTAAACCTGATTACCTTGAAAAGAAAGGTTTTGTCGAAGCTCATTCCGATGATGGATTGCTTGAAATATTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAAGCAAAGCACATTGCTCAGGCTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAATGGAATCGTGCGTATGTTCAGATGGATGGAGAGCCATGGAAACAACCACTCCTACAGGAGCAGTCAACCATTATCGAGATAAACAAAGTTCCTTACCCTTCTCTGATGATAAATGGGGAGCAATGAGATCTTCCCCGATTTCAATCAGGGTCGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAGCTGCAGGGATTAGCCATGGCCGGAGCACAATCGGGCAAAATGTACTGTTGTATCATATAAATTATGTTGTGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATTTTTACCGTCAAAACAAACAAAAAAAATCAAGTGGAAAAACACAATGTACTGTAAATTACTCAGATTTCCCCTCCTGTTATGCCAATTTGGAAAAAAAAAAANAA]

[+] EMBL AU066176             [CCAGCTCGCCATAGCTCGCCATAGGAGAGGGGATTTCGAAGCTGCTCTTGCTTAGCTGCGGCTGCNAGTNATACGGAGTAGTTCCGGTGATGGAGCGAGCGGAGGAGACGCCGAGGGCGCCGTCGACGG G CGTCGG GAGTGGTGTCGATCTGGGAGTCGGTGCGCGCNTNCGGGGTGTGGGGGAAGGAGGTGGACAAGGCCGAGCTGCGGAGGCAGGTCGTCATGCACATGTACGCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK065676             [                                 TTTCGAAGCTGCTCTTGCTTAGCTGCGGCTGCGAGTGATACGGAGTAGTTCCGGTGATGGAGCGAGCGGAGGAGACGCCGAGGGCGCCGTCGACGGCGCCGTCGGCGAG GGTGTCGATCTGGGAGTCGGTGCGCGCGTGCGGGGTGTGGGGGAAGGAGGTGGACAAGGCCGAGCTGCGGAGGCAGGTCGTCATGCCGCTGTACGCGCGGCGTGCGGTCGCGGCCGCCGTGAAGGCCAAGGACGAGGCCGTCGGCGTGGCGGCGGCGGCGGAGAGGGGCGAGGAGGGGGAGGTGGAGGTGGAGGTGGAGGCGGCCGTGACGCCGGTGGTGGTGTTCGTCAACTCGCGGAGCGGCGGTAGGCACGGGCCCGAGCTCAAGGTGCGGCTCCACGAGCTCATCAGCGAGGAGCAGGTCTTTGATCTCTCTGTCGTGAAGCCTTCTGATTTCATTAACTACGGGTTGGGTTGTTTGGAGAAATTGGCCGAACAAGGTGACAATTGTGCGGAGACCATTCGAAAAAAATTGAGGATTATGGTTGCTGGTGGTGATGGCACAGTTGGTTGGGTACTTGGCTGTCTCACAGATCTTTATAGGTTGAAAAGAGAACCAGTTCCACCCACAGGTATCATCCCACTTGGTACAGGAAATGATCTTGCCAGATCATTTGGATGGGGTGGCTCTTTTCCCTTTGGTTGGCGTTCAGCTGTGAAGCGTTATCTCAGCAAGGCAGCTACAGCTCCCACCTGCAGTCTTGACAGTTGGCAAGCTGTAGTTATGATGCCAGATGGAGAGATAAAAGAGTTGCCATATGCACTTAAGAAAACGGAACCTGCAGACTGCTTGGAACTTTGCCAGGAGAATGGCACTGAGTTACCTGAGAAAGCTTCTTGCTATAAAGGAGTATTCTACAACTACCTTAGCATTGGGATGGATGCCCAAGTTGCTTATGGCTTCCACCATCTTCGTGATGAAAAGCCATATCTTGCTCAAGGGCCTGTTGCAAATAAGTTGATATATGCTGGTTATAGCTGCACACAGGGGTGGTTCTGCACACCTTGTACAGCAAGCCCTCAGTTAAGGGGGCTTAAGAACATTTTGCGACTTTACATTAAAAAAAGTCAATTGTTCTGAATGGGAGCAAGTTACAATGCCTTCAAGTGTTAGATCCCTGGTGGTCTTAAATTTATACAACTACGGCAGTGGAAGGCATCCATGGGGTGATCTTAAACCTGATTACCTTGAAAAGAAAGGTTTTGTCGAAGCTCATTCCGATGATGGATTGCTTGAAATATTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAAGCAAAGCACATTGCTCAGGCTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAATGGAATCGTGCGTATGTTCAGATGGATGGAGAGCCATGGAAACAACCACTCCTACAGGAGCAGTCAACCATTATCGAGATAAACAAAGTTCCTTACCCTTCTCTGATGATAAATGGGGAGCAATGAGATCTTCCCCGATTTCAATCAGGGTCGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAGCTGCAGGGATTAGCCATGGCCGGAGCACAATCGGGCAAAATGTACTGTTGTATCATATAAATTATGTTGTGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATTTTTACCGTCAAAACAAACAAAAAAAATCAAGTGGAAAAACACAATGTACTGTAAATTACTCAGATTTCCCCTC                               ]
[+] EMBL AU164861             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCCGATGATGGATTGCTTGAAATATTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAAGCAAAGCACATTGCTCAGGCTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAATGGAATCGTGCGTATGTTCAGATGGATGGAGAGCCATGGAAACAACCACTCCTACAGGAGCAGTCAACCATTATCGAGATAAACAAAGTTCCTTACCCTTCTCTGATGATAAATGGGGAGCAATGAGATCTTCCCCGATTTCAATCAGGGTCGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAGCTGCAGGGATTAGCCATGGCCGGAGCACAATCGGGCAAAATGTACTGTTGTATCATATAAATTATGTTGTGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATTTTTACCGTCAAAACAAACAAAAAAAATCAAGTGGAAAAACACAATGTACTGTAAATTACTCAGATTTCCCCTCCTGTTATGCCAATTTGGAAAAAAAAAAANAA]




>consensus_11612#0
CCAGCTCGCCATAGCTCGCCATAGGAGAGGGGATTTCGAAGCTGCTCTTGCTTAGCTGCG
GCTGCNAGTNATACGGAGTAGTTCCGGTGATGGAGCGAGCGGAGGAGACGCCGAGGGCGC
CGTCGACGGGCGTCGGGAGGGTGTCGATCTGGGAGTCGGTGCGCGCNTNCGGGGTGTGGG
GGAAGGAGGTGGACAAGGCCGAGCTGCGGAGGCAGGTCGTCATGCACATGTACGCGCGGC
GTGCGGTCGCGGCCGCCGTGAAGGCCAAGGACGAGGCCGTCGGCGTGGCGGCGGCGGCGG
AGAGGGGCGAGGAGGGGGAGGTGGAGGTGGAGGTGGAGGCGGCCGTGACGCCGGTGGTGG
TGTTCGTCAACTCGCGGAGCGGCGGTAGGCACGGGCCCGAGCTCAAGGTGCGGCTCCACG
AGCTCATCAGCGAGGAGCAGGTCTTTGATCTCTCTGTCGTGAAGCCTTCTGATTTCATTA
ACTACGGGTTGGGTTGTTTGGAGAAATTGGCCGAACAAGGTGACAATTGTGCGGAGACCA
TTCGAAAAAAATTGAGGATTATGGTTGCTGGTGGTGATGGCACAGTTGGTTGGGTACTTG
GCTGTCTCACAGATCTTTATAGGTTGAAAAGAGAACCAGTTCCACCCACAGGTATCATCC
CACTTGGTACAGGAAATGATCTTGCCAGATCATTTGGATGGGGTGGCTCTTTTCCCTTTG
GTTGGCGTTCAGCTGTGAAGCGTTATCTCAGCAAGGCAGCTACAGCTCCCACCTGCAGTC
TTGACAGTTGGCAAGCTGTAGTTATGATGCCAGATGGAGAGATAAAAGAGTTGCCATATG
CACTTAAGAAAACGGAACCTGCAGACTGCTTGGAACTTTGCCAGGAGAATGGCACTGAGT
TACCTGAGAAAGCTTCTTGCTATAAAGGAGTATTCTACAACTACCTTAGCATTGGGATGG
ATGCCCAAGTTGCTTATGGCTTCCACCATCTTCGTGATGAAAAGCCATATCTTGCTCAAG
GGCCTGTTGCAAATAAGTTGATATATGCTGGTTATAGCTGCACACAGGGGTGGTTCTGCA
CACCTTGTACAGCAAGCCCTCAGTTAAGGGGGCTTAAGAACATTTTGCGACTTTACATTA
AAAAAAGTCAATTGTTCTGAATGGGAGCAAGTTACAATGCCTTCAAGTGTTAGATCCCTG
GTGGTCTTAAATTTATACAACTACGGCAGTGGAAGGCATCCATGGGGTGATCTTAAACCT
GATTACCTTGAAAAGAAAGGTTTTGTCGAAGCTCATTCCGATGATGGATTGCTTGAAATA
TTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAAGCAAAG
CACATTGCTCAGGCTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAATGGAATCGTGCG
TATGTTCAGATGGATGGAGAGCCATGGAAACAACCACTCCTACAGGAGCAGTCAACCATT
ATCGAGATAAACAAAGTTCCTTACCCTTCTCTGATGATAAATGGGGAGCAATGAGATCTT
CCCCGATTTCAATCAGGGTCGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAGC
TGCAGGGATTAGCCATGGCCGGAGCACAATCGGGCAAAATGTACTGTTGTATCATATAAA
TTATGTTGTGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATT
TTTACCGTCAAAACAAACAAAAAAAATCAAGTGGAAAAACACAATGTACTGTAAATTACT
CAGATTTCCCCTCCTGTTATGCCAATTTGGAAAAAAAAAAANAA

consensusID : consensus_11612#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1458
fasta sequence

                              [CAACTACTTTGCATAACATCCTTGCACTAGTTCTTTCTGACAGGTTGCTGGTGGTGATGGCACAGTTGGTTGGGTACTTGGCTGTCTCACAGATCTTTATAGGTTGAAAAGAGAACCAGTTCCACCCACAGGTATCATCCCACTTGGTACAGGAAATGATCTTGCCAGATCATTTGGATGGGTAAGGATCCATATATGATGCAATTGTTCTATTTATATCCTTTCTTTGTAATTTACAGTGTTAACTAAGCTTTTGAGGGAAGGTGAGCGATTCACTCATACTACAACTAATAAGCATATGAACAGGGTGGCTCTTTTCCCTTTGGTTGGCGTTCAGCTGTGAAGCGTTATCTCAGCAAGGCAGCTACAGCTCCCACCTGCAGTCTTGACAGTTGGCAAGCTGTAGTTATGATGCCAGATGGAGAGATAAAAGAGTTGCCATATGCACTTAAGAAAACGGAACCTGCAGACTGCTTGGAACTTTGCCAGGAGAATGGCACTGAGTTACCTGAGAAAGCTTCTTGCTATAAAGGAGTATTCTACAACTACCTTAGCATTGGGATGGATGCCCAAGTTGCTTATGGCTTCCACCATCTTCGTGATGAAAAGCCATATCTTGCTCAAGGGCCTGTTGCAAATAAGTTGATATATGCTGGTTATAGCTGCACACAGGGGTGGTTCTGCACACCTTGTACAGCAAGCCCTCAGTTAAGGGGGCTTAAGAACATTTTGCGACTTTACATTAAAAAAGTCAATTGTTCTGAATGGGAGCAAGTTACAATGCCTTCAAGTGTTAGATCCCTGGTGGTCTTAAATTTATACAACTACGGCAGTGGAAGGCATCCATGGGGTGATCTTAAACCTGATTACCTTGAAAAGAAAGGTTTTGTCGAAGCTCATTCCGATGATGGATTGCTTGAAATATTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAAGCAAAGCACATTGCTCAGGCTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAATGGAATCGTGCGTATGTTCAGATGGATGGAGAGCCATGGAAACAACCACTCCTACAGGAGCAGTCAACCATTATCGAGATAAACAAAGTTCCTTACCCTTCTCTGATGATAAATGGGGAGCAATGAGATCTTCCCCGATTTCAATCAGGGTCGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAGC-TGCAGGGATTAGCCATGGCCGGAGCACAATCGGGCAAAATGTACTGTTGTATCATATAAATTATGTTGTGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATTTTTACCGTCAAAACAAACAAAAAAAATCAAGTGGAAAAACACAATGTACTGTAAATTACTCAGATTTCCCCTCCTGTTATGCCAATTTGGAAATCTTTTGCTGCAAAAAAAAGA]

[+] EMBL CB649780             [CAACTACTTTGCATAACATCCTTGCACTAGTTCTTTCTGACAGGTTGCTGGTGGTGATGGCACAGTTGGTTGGGTACTTGGCTGTCTCACAGATCTTTATAGGTTGAAAAGAGAACCAGTTCCACCCACAGGTATCATCCCACTTGGTACAGGAAATGATCTTGCCAGATCATTTGGATGGGTAAGGATCCATATATGATGCAATTGTTCTATTTATATCCTTTCTTTGTAATTTACAGTGTTAACTAAGCTTTTGAGGGAAGGTGAGCGATTCACTCATACTACAACTAATAAGCATATGAACAGGGTGGCTCTTTTCCCTTTGGTTGGCGTTCAGCTGTGAAGCGTTATCTCAGCAAGGCAGCTACAGCTCCCACCTGCAGTCTTGACAGTTGGCAAGCTGTAGTTATGATGCCAGATGGAGAGATAAAAGAGTTGCCATATGCACTTAAGAAAACGGAACCTGCAGACTGCTTGGAACTTTGCCAGGAGAATGGCACTGAGTTACCTGAGAAAGCTTCTTGCTATAAAGGAGTATTCTACAACTACCTTAGCATTGGGATGGATGCCCAAGTTGCTTATGGCTTCCACCATCTTCGTGATGAAAAGCCATATCTTGCTCAAGGGCCTGTTGCAAATAAGTTGATATATGCTGGTTATAGCTGCACACAGGGGTGGTTCTGCACACCTTGTACAGCAAGCCCTCAGTTAAGGGGGCTTAAGAACATTTTGCGACTTTACATTAAAAAAGTCAATTGTTCTGAATGGGAGCAAGTTACAATGCCTTCAAGTGTTAGATCCCTGGTGGTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB649781             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TATATGCTGGTTATAGCTGCACACAGGGGTGGTTCTGCACACCTTGTACAGCAAGCCCTCAGTTAAGGGGGCTTAAGAACATTTTGCGACTTTACATTAAAAAAGTCAATTGTTCTGAATGGGAGCAAGTTACAATGCCTTCAAGTGTTAGATCCCTGGTGGTCTTAAATTTATACAACTACGGCAGTGGAAGGCATCCATGGGGTGATCTTAAACCTGATTACCTTGAAAAGAAAGGTTTTGTCGAAGCTCATTCCGATGATGGATTGCTTGAAATATTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAAGCAAAGCACATTGCTCAGGCTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAATGGAATCGTGCGTATGTTCAGATGGATGGAGAGCCATGGAAACAACCACTCCTACAGGAGCAGTCAACCATTATCGAGATAAACAAAGTTCCTTACCCTTCTCTGATGATAAATGGGGAGCAATGAGATCTTCCCCGATTTCAATCAGGGTCGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAGC TGCAGGGATTAGCCATGGCCGGAGCACAATCGGGCAAAATGTACTGTTGTATCATATAAATTATGTTGTGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATTTTTACCGTCAAAACAAACAAAAAAAATCAAGTGGAAAAACACAATGTACTGTAAATTACTCAGATTTCCCCTCCTGTTATGCCAATTTGGAAATCTTTTGCTGCAAAAAAAAGA]
[+] EMBL BF889483             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GCCCTCAGTTAAGGGGGCTTAAGAACATTTTGCGACTTTACATTAAAAAAGTCAATTGTTCTGAATGGGAGCAAGTTACAATGCCTTCAAGTGTTAGATCCCTGGTGGTCTTAAATTTATACAACTACGGCAGTGGAAGGCATCCATGGGGTGATCTTAAACCTGATTACCTTGAAAAGAAAGGTTTTGTCGAAGCTCATTCCGATGATGGATTGCTTGAAATATTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGTTGAGCTAATTAAAGCAAAGCACATTGCTCAGGCTGCAGCCATCAAGTTTGAAATGAGGGGTGG CAATGGAATCGTGCGTATGTTCAGATGGATGGAGAGCCATGGAAACAACCACTCCTACAGGAGCAGTCAACCACTATCGAGATAAACAAAGTTCCTTACCCTTCTCTGATGATAAATGGGGAGCAATGAGATCTTCCCCGATTTCAATCAGGGTCGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAGCTTGCAGGGATAAGCCACGGCCGGAGCACAATCGGG                                                                                                                                                                                                        ]
[+] EMBL CB665300             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCTTCAAGTGTTAGATCCCTGGTGGTCTTAAATTTATACAACTACGGCAGTGGAAGGCATCCATGGGGTGATCTTAAACCTGATTACCTTGAAAAGAAAGGTTTTGTCGAAGCTCATTCCGATGATGGATTGCTTGAAATATTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAAGCAAAGCACATTGCTCAGGCTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAATGGAATCGTGCGTATGTTCAGATGGATGGAGAGCCATGGAAACAACCACTCCTACAGGAGCAGTCAACCATTATCGAGATAAACAAAGTTCCTTACCCTTCTCTGATGATAAATGGGGAGCAATGAGATCTTCCCCGATTTCAATCAGGGTCGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAGC TGCAGGGATTAGCCATGGCCGGAGCACAATCGGGCAAAATGTACTGTTGTATCATATAAATTATGTTGTGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATTTTTACCGTCAAAACAAACAAAAAAAATCAAGTGGAAAAACAC                                                                        ]




>consensus_11612#1
CAACTACTTTGCATAACATCCTTGCACTAGTTCTTTCTGACAGGTTGCTGGTGGTGATGG
CACAGTTGGTTGGGTACTTGGCTGTCTCACAGATCTTTATAGGTTGAAAAGAGAACCAGT
TCCACCCACAGGTATCATCCCACTTGGTACAGGAAATGATCTTGCCAGATCATTTGGATG
GGTAAGGATCCATATATGATGCAATTGTTCTATTTATATCCTTTCTTTGTAATTTACAGT
GTTAACTAAGCTTTTGAGGGAAGGTGAGCGATTCACTCATACTACAACTAATAAGCATAT
GAACAGGGTGGCTCTTTTCCCTTTGGTTGGCGTTCAGCTGTGAAGCGTTATCTCAGCAAG
GCAGCTACAGCTCCCACCTGCAGTCTTGACAGTTGGCAAGCTGTAGTTATGATGCCAGAT
GGAGAGATAAAAGAGTTGCCATATGCACTTAAGAAAACGGAACCTGCAGACTGCTTGGAA
CTTTGCCAGGAGAATGGCACTGAGTTACCTGAGAAAGCTTCTTGCTATAAAGGAGTATTC
TACAACTACCTTAGCATTGGGATGGATGCCCAAGTTGCTTATGGCTTCCACCATCTTCGT
GATGAAAAGCCATATCTTGCTCAAGGGCCTGTTGCAAATAAGTTGATATATGCTGGTTAT
AGCTGCACACAGGGGTGGTTCTGCACACCTTGTACAGCAAGCCCTCAGTTAAGGGGGCTT
AAGAACATTTTGCGACTTTACATTAAAAAAGTCAATTGTTCTGAATGGGAGCAAGTTACA
ATGCCTTCAAGTGTTAGATCCCTGGTGGTCTTAAATTTATACAACTACGGCAGTGGAAGG
CATCCATGGGGTGATCTTAAACCTGATTACCTTGAAAAGAAAGGTTTTGTCGAAGCTCAT
TCCGATGATGGATTGCTTGAAATATTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTT
ATGGCTGAGCTAATTAAAGCAAAGCACATTGCTCAGGCTGCAGCCATCAAGTTTGAAATG
AGGGGTGGCCAATGGAATCGTGCGTATGTTCAGATGGATGGAGAGCCATGGAAACAACCA
CTCCTACAGGAGCAGTCAACCATTATCGAGATAAACAAAGTTCCTTACCCTTCTCTGATG
ATAAATGGGGAGCAATGAGATCTTCCCCGATTTCAATCAGGGTCGTATTCTAGATCGTTA
GATTATGTATAGTTCGGGAGCAGCTGCAGGGATTAGCCATGGCCGGAGCACAATCGGGCA
AAATGTACTGTTGTATCATATAAATTATGTTGTGTCGTAGGTTATTTCAGTGGAAATCAA
ATATAACTTGATTTGTAATGTATTTTTACCGTCAAAACAAACAAAAAAAATCAAGTGGAA
AAACACAATGTACTGTAAATTACTCAGATTTCCCCTCCTGTTATGCCAATTTGGAAATCT
TTTGCTGCAAAAAAAAGA

consensusID : consensus_11612#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 679
fasta sequence

                              [CTTAAAAAAATCCATTTTTTTAAATGGACCAGGGTCCAACGCCTTCAAGGGTTAAATCCTGCGTGTTCTAAGTTTTACAAATTCGGCAGTGGAAGGTATCCATGGGGGGATCTTACGCCTGATTACCTTGAAAAGAAAGGTTTTGTTGAAGCTCATTCCCATGAAGGACTGCTTAAAATTTTCGGTTTGAAAAAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAATCCAAGCCCCTTGCTCAGGGTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAAAGGAATCGTGGGTATGTTTGGATGGATGGAGAGCCATGGAAACACCCGCTCCTACAGGAGCAGTCACCCATTATCGAGATAAACAAAGTTCCTTACCCTTTTTTGATGATAAATGGGGAGCAATGAGATTTTTCCCGATTTCAATCAGGGTTGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAACTGCAGGGATTAGCCATGGCCGGAGCCCAATCGGGCAAAATGTACTGTTGTATCATATAAATTATGTTGAGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATTTTTACCGTCAAAACAAACAAAAAAATCAATTGGAAAAACCCAATGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA763056             [CTTAAAAAAATCCATTTTTTTAAATGGACCAGGGTCCAACGCCTTCAAGGGTTAAATCCTGCGTGTTCTAAGTTTTACAAATTCGGCAGTGGAAGGTATCCATGGGGGGATCTTACGCCTGATTACCTTGAAAAGAAAGGTTTTGTTGAAGCTCATTCCCATGAAGGACTGCTTAAAATTTTCGGTTTGAAAAAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAATCCAAGCCCCTTGCTCAGGGTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAAAGGAATCGTGGGTATGTTTGGATGGATGGAGAGCCATGGAAACACCCGCTCCTACAGGAGCAGTCACCCATTATCGAGATAAACAAAGTTCCTTACCCTTTTTTGATGATAAATGGGGAGCAATGAGATTTTTCCCGATTTCAATCAGGGTTGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAACTGCAGGGATTAGCCATGGCCGGAGCCCAATCGGGCAAAATGTACTGTTGTATCATATAAATTATGTTGAGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATTTTTACCGTCAAAACAAACAAAAAAATCAATTGGAAAAACCCAATGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11612#2
CTTAAAAAAATCCATTTTTTTAAATGGACCAGGGTCCAACGCCTTCAAGGGTTAAATCCT
GCGTGTTCTAAGTTTTACAAATTCGGCAGTGGAAGGTATCCATGGGGGGATCTTACGCCT
GATTACCTTGAAAAGAAAGGTTTTGTTGAAGCTCATTCCCATGAAGGACTGCTTAAAATT
TTCGGTTTGAAAAAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAATCCAAG
CCCCTTGCTCAGGGTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAAAGGAATCGTGGG
TATGTTTGGATGGATGGAGAGCCATGGAAACACCCGCTCCTACAGGAGCAGTCACCCATT
ATCGAGATAAACAAAGTTCCTTACCCTTTTTTGATGATAAATGGGGAGCAATGAGATTTT
TCCCGATTTCAATCAGGGTTGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAAC
TGCAGGGATTAGCCATGGCCGGAGCCCAATCGGGCAAAATGTACTGTTGTATCATATAAA
TTATGTTGAGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATT
TTTACCGTCAAAACAAACAAAAAAATCAATTGGAAAAACCCAATGTTCTGTAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

consensusID : consensus_11612#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [TCCGATGATGGATTGCTTGAAATATTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAAGCAAAGCACATTGCTCAGGTACTTACATTTGTTTGGCACACTATATTTCTATTGAGTATTGGCAAGGAATTGCTCTATGGGAATTTGGGATGCCCATATGGGATCTTATGGTCTGTTGAAAAA]

[+] EMBL AU165205             [TCCGATGATGGATTGCTTGAAATATTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAAGCAAAGCACATTGCTCAGGTACTTACATTTGTTTGGCACACTATATTTCTATTGAGTATTGGCAAGGAATTGCTCTATGGGAATTTGGGATGCCCATATGGGATCTTATGGTCTGTTGAAAAA]




>consensus_11612#3
TCCGATGATGGATTGCTTGAAATATTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTT
ATGGCTGAGCTAATTAAAGCAAAGCACATTGCTCAGGTACTTACATTTGTTTGGCACACT
ATATTTCTATTGAGTATTGGCAAGGAATTGCTCTATGGGAATTTGGGATGCCCATATGGG
ATCTTATGGTCTGTTGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11612#0      CCAGCTCGCCATAGCTCGCCATAGGAGAGGGGATTTCGAAGCTGCTCTTGCTTAGCTGCG 60
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      ------------------------------------------------------------
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      GCTGCNAGTNATACGGAGTAGTTCCGGTGATGGAGCGAGCGGAGGAGACGCCGAGGGCGC 120
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      ------------------------------------------------------------
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      CGTCGACGGGCGTCGGGAGGGTGTCGATCTGGGAGTCGGTGCGCGCNTNCGGGGTGTGGG 180
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      ------------------------------------------------------------
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      GGAAGGAGGTGGACAAGGCCGAGCTGCGGAGGCAGGTCGTCATGCACATGTACGCGCGGC 240
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      ------------------------------------------------------------
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      GTGCGGTCGCGGCCGCCGTGAAGGCCAAGGACGAGGCCGTCGGCGTGGCGGCGGCGGCGG 300
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      ------------------------------------------------------------
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      AGAGGGGCGAGGAGGGGGAGGTGGAGGTGGAGGTGGAGGCGGCCGTGACGCCGGTGGTGG 360
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      ------------------------------------------------------------
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      TGTTCGTCAACTCGCGGAGCGGCGGTAGGCACGGGCCCGAGCTCAAGGTGCGGCTCCACG 420
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      ------------------------------CAACTACTTTGCATAACATCCTTGCACTAG 30
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      AGCTCATCAGCGAGGAGCAGGTCTTTGATCTCTCTGTCGTGAAGCCTTCTGATTTCATTA 480
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      TTCTTTCTGACAGGTTGCTGGTGGTGATGGCACAGTTGGTTGGGTACTTGGCTGTCTCAC 90
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      ACTACGGGTTGGGTTGTTTGGAGAAATTGGCCGAACAAGGTGACAATTGTGCGGAGACCA 540
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      AGATCTTTATAGGTTGAAAAGAGAACCAGTTCCACCCACAGGTATCATCCCACTTGGTAC 150
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      TTCGAAAAAAATTGAGGATTATGGTTGCTGGTGGTGATGGCACAGTTGGTTGGGTACTTG 600
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      AGGAAATGATCTTGCCAGATCATTTGGATGGGTAAGGATCCATATATGATGCAATTGTTC 210
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      GCTGTCTCACAGATCTTTATAGGTTGAAAAGAGAACCAGTTCCACCCACAGGTATCATCC 660
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      TATTTATATCCTTTCTTTGTAATTTACAGTGTTAACTAAGCTTTTGAGGGAAGGTGAGCG 270
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      CACTTGGTACAGGAAATGATCTTGCCAGATCATTTGGATGGGGTGGCTCTTTTCCCTTTG 720
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      ATTCACTCATACTACAACTAAT-----AAGCATATGAACAGGGTGGCTCTTTTCCCTTTG 325
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      GTTGGCGTTCAGCTGTGAAGCGTTATCTCAGCAAGGCAGCTACAGCTCCCACCTGCAGTC 780
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      GTTGGCGTTCAGCTGTGAAGCGTTATCTCAGCAAGGCAGCTACAGCTCCCACCTGCAGTC 385
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      TTGACAGTTGGCAAGCTGTAGTTATGATGCCAGATGGAGAGATAAAAGAGTTGCCATATG 840
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      TTGACAGTTGGCAAGCTGTAGTTATGATGCCAGATGGAGAGATAAAAGAGTTGCCATATG 445
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      CACTTAAGAAAACGGAACCTGCAGACTGCTTGGAACTTTGCCAGGAGAATGGCACTGAGT 900
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      CACTTAAGAAAACGGAACCTGCAGACTGCTTGGAACTTTGCCAGGAGAATGGCACTGAGT 505
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      TACCTGAGAAAGCTTCTTGCTATAAAGGAGTATTCTACAACTACCTTAGCATTGGGATGG 960
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      TACCTGAGAAAGCTTCTTGCTATAAAGGAGTATTCTACAACTACCTTAGCATTGGGATGG 565
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      ATGCCCAAGTTGCTTATGGCTTCCACCATCTTCGTGATGAAAAGCCATATCTTGCTCAAG 1020
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      ATGCCCAAGTTGCTTATGGCTTCCACCATCTTCGTGATGAAAAGCCATATCTTGCTCAAG 625
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      GGCCTGTTGCAAATAAGTTGATATATGCTGGTTATAGCTGCACACAGGGGTGGTTCTGCA 1080
consensus_11612#2      ------------------------------------------------------------
consensus_11612#1      GGCCTGTTGCAAATAAGTTGATATATGCTGGTTATAGCTGCACACAGGGGTGGTTCTGCA 685
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      CACCTTGTACAGCAAGCCCTCAGTTAAGGGGGCTTAAGAACATTTTGCGACTTTACATTA 1140
consensus_11612#2      ---------------------------------------------------------CTT 3
consensus_11612#1      CACCTTGTACAGCAAGCCCTCAGTTAAGGGGGCTTAAGAACATTTTGCGACTTTACATT- 744
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      AAAAAAGTCAATTGTTCTGAATGGGAGCAAGTTACAATGCCTTCAAGTGTTAGATCCCTG 1200
consensus_11612#2      AAAAAAATCCATTTTTTTAAATGG-ACCAGGGTCCAACGCCTTCAAGGGTTAAATCCTGC 62
consensus_11612#1      AAAAAAGTCAATTGTTCTGAATGGGAGCAAGTTACAATGCCTTCAAGTGTTAGATCCCTG 804
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      GTGGTCTTAAATTTATACAACTACGGCAGTGGAAGGCATCCATGGGGTGATCTTAAACCT 1260
consensus_11612#2      GTGTTCT--AAGTTTTACAAATTCGGCAGTGGAAGGTATCCATGGGGGGATCTTACGCCT 120
consensus_11612#1      GTGGTCTTAAATTTATACAACTACGGCAGTGGAAGGCATCCATGGGGTGATCTTAAACCT 864
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      GATTACCTTGAAAAGAAAGGTTTTGTCGAAGCTCATTCCGATGATGGATTGCTTGAAATA 1320
consensus_11612#2      GATTACCTTGAAAAGAAAGGTTTTGTTGAAGCTCATTCCCATGAAGGACTGCTTAAAATT 180
consensus_11612#1      GATTACCTTGAAAAGAAAGGTTTTGTCGAAGCTCATTCCGATGATGGATTGCTTGAAATA 924
consensus_11612#3      ------------------------------------TCCGATGATGGATTGCTTGAAATA 24
                                                           *** **** *** ***** **** 

consensus_11612#0      TTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAAGCAAAG 1380
consensus_11612#2      TTCGGTTTGAAAAAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAATCCAAG 240
consensus_11612#1      TTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAAGCAAAG 984
consensus_11612#3      TTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTATGGCTGAGCTAATTAAAGCAAAG 84
                       ****** ***** ***************************************** * ***

consensus_11612#0      CACATTGCTCAGGCTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAATGGAATCGTGCG 1440
consensus_11612#2      CCCCTTGCTCAGGGTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAAAGGAATCGTGGG 300
consensus_11612#1      CACATTGCTCAGGCTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAATGGAATCGTGCG 1044
consensus_11612#3      CACATTGCTCAGG-TACTTACATTT-GTTTGGCACACTATATTTCTATTG-AGTATTGGC 141
                       * * ********* * *   ***   *****  *       *  * *  * * *  **  

consensus_11612#0      TATGTTCAGATGGATGGAGAGCCATGGAAACAACCACTCCTACAGGAGCAGTCAACCATT 1500
consensus_11612#2      TATGTTTGGATGGATGGAGAGCCATGGAAACACCCGCTCCTACAGGAGCAGTCACCCATT 360
consensus_11612#1      TATGTTCAGATGGATGGAGAGCCATGGAAACAACCACTCCTACAGGAGCAGTCAACCATT 1104
consensus_11612#3      AAGGAATTGCTCTATGGGAATT--TGGGA-----TGCCCATATGGGATC--TTATGGTCT 192
                        * *    * *  ****  *    *** *       * * **  *** *  * *     *

consensus_11612#0      ATCGAGATAAACAAAGTTCCTTACCCTTCTCTGATGATAAATGGGGAGCAATGAGATCTT 1560
consensus_11612#2      ATCGAGATAAACAAAGTTCCTTACCCTTTTTTGATGATAAATGGGGAGCAATGAGATTTT 420
consensus_11612#1      ATCGAGATAAACAAAGTTCCTTACCCTTCTCTGATGATAAATGGGGAGCAATGAGATCTT 1164
consensus_11612#3      GTTGAAAAA--------------------------------------------------- 201
                        * ** * *                                                   

consensus_11612#0      CCCCGATTTCAATCAGGGTCGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAGC 1620
consensus_11612#2      TCCCGATTTCAATCAGGGTTGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAAC 480
consensus_11612#1      CCCCGATTTCAATCAGGGTCGTATTCTAGATCGTTAGATTATGTATAGTTCGGGAGCAGC 1224
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      TGCAGGGATTAGCCATGGCCGGAGCACAATCGGGCAAAATGTACTGTTGTATCATATAAA 1680
consensus_11612#2      TGCAGGGATTAGCCATGGCCGGAGCCCAATCGGGCAAAATGTACTGTTGTATCATATAAA 540
consensus_11612#1      TGCAGGGATTAGCCATGGCCGGAGCACAATCGGGCAAAATGTACTGTTGTATCATATAAA 1284
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      TTATGTTGTGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATT 1740
consensus_11612#2      TTATGTTGAGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATT 600
consensus_11612#1      TTATGTTGTGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATT 1344
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      TTTACCGTCAAAACAAACAAAAAAAATCAAGTGGAAAAACACAATGTACTGTAAATTACT 1800
consensus_11612#2      TTTACCGTCAAAACAAACAAAAAAA-TCAATTGGAAAAACCCAATGTTCTGTAAAAAAAA 659
consensus_11612#1      TTTACCGTCAAAACAAACAAAAAAAATCAAGTGGAAAAACACAATGTACTGTAAATTACT 1404
consensus_11612#3      ------------------------------------------------------------
                                                                                   

consensus_11612#0      CAGATTTCCCCTCCTGTTATGCCAATTTGGAAAA----------AAAAAAANAA 1844
consensus_11612#2      AAAA------------------------AAAAAA----------AAAAAAAAAA 679
consensus_11612#1      CAGATTTCCCCTCCTGTTATGCCAATTTGGAAATCTTTTGCTGCAAAAAAAAGA 1458
consensus_11612#3      ------------------------------------------------------