cluster # 11624

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Oryza sativa
cluster # 11624 cluster # 11624 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11624#0 length = 787 sequences # 8

consensus_11624#1 length = 450 sequences # 1

consensusID : consensus_11624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 787
fasta sequence

                              [CACATCCTCTCATCTCTGTCATTCTGCAGCTAGCTGAAAAAATCTTCAGAGAATCATCAGTTCATCACAAAAGACTATCAAGCGAGGCAAGTACGTGACGGTGACTGTGATGAGCGGCGGCGGCGGCGGCGGGAGGGGGATGACGAGGGGGCTGGACCTGAAGCTGAACCTGTCGCTG-CCGGCGGTGGCGCGCGCGGTGTCGCCGGCGGCGGA-CGACGAGTCGTCGCCGAGCTCGTGCCTGTCGTCGGAGAGCG-AG-CTGCGGCAGCAGCA-C-G-GCGGCGGCGGCGGGCAGCTGCAGTGGTCGGACAGCCCGGAGGCGACGTCGATGGTGCTCG-CCGCGTGCCCGCGCTGCTTCCTCTACGTCATGCTCGCCGAGGCCGACCCGCGCTGCCCCAAGTGCCGGAGCCCCGTCATCCTCGACTTCCTCCACGCCGGCGGCGGCGGCGGCATCAACGCCGACGGCCGCCGCCACCGGAGGGGATGAACATGGCCATGACCATGATGGCAGCAAGAGATCGAGGAGAAGCATCTACACGCTTCTTTGATCGCGCAGAGGCATCAGGAATTCAGGATCAAGAAGAACAACGAGAAGAAGAAATCTCACCTTGATGATGATCACAGTTAATTAGTTCTAGGCCCCATTAGTTTCTTCTCAATTAGCAGCAGTAGTATCATGATTAATCAGCTCGATCCTCTGCAGATTATGCAGTATAACCATGATTTATAAGCATCAATCTATATATTATCACACGTAGTATCATCGATTCGATCGATCCCAGCAAAAAAAAAA]

[+] EMBL AK073251             [CACATCCTCTCATCTCTGTCATTCTGCAGCTAGCTGAAAAAATCTTCAGAGAATCATCAGTTCATCACAAAAGACTATCAAGCGAGGCAAGTACGTGACGGTGACTGTGATGAGCGGCGGCGGCGGCGGCGGGAGGGGGATGACGAGGGGGCTGGACCTGAAGCTGAACCTGTCGCTG CCGGCGGTGGCGCGCGCGGTGTCGCCGGCGGCGGA CGACGAGTCGTCGCCGAGCTCGTGCCTGTCGTCGGAGAGCG AG CTGCGGCAGCAGCA C G GCGGCGGCGGCGGGCAGCTGCAGTGGTCGGACAGCCCGGAGGCGACGTCGATGGTGCTCG CCGCGTGCCCGCGCTGCTTCCTCTACGTCATGCTCGCCGAGGCCGACCCGCGCTGCCCCAAGTGCCGGAGCCCCGTCATCCTCGACTTCCTCCACGCCGGCGGCGGCGGCGGCATCAACGCCGACGGCCGCCGCCACCGGAGGGGATGAACATGGCCATGACCATGATGGCAGCAAGAGATCGAGGAGAAGCATCTACACGCTTCTTTGATCGCGCAGAGGCATCAGGAATTCAGGATCAAGAAGAACAACGAGAAGAAGAAATCTCACCTTGATGATGATCACAGTTAATTAGTTCTAGGCCCCATTAGTTTCTTCTCAATTAGCAGCAGTAGTATCATGATTAATCAGCTCGATCCTCTGCAGATTATGCAGTATAACCATGATTTATAAGCATCAATCTATATATTATCACACGTAGTATCATCGATTC                       ]
[+] EMBL OSC20521             [          CATCTCTGTCATTCTGCAGCTAGCTGAAAAAATCTTCAGAGAATCATCAGTTCATCACAAAAGACTATCAAGCGAGGCAAGTACGTGACGGTGACTGTNATGAGCGGCGGCGGCGGCGGCGGGAGGGGGATGACGAGGGGGCTGGACCTGAAGCTGAACCTGTNGCTG CCGGCGGTGGCGCGCGCGGTGTCGCCGGCGG GGACCGACGAGTCNTCGCCGAGCTCGTGCCTNTCGTCGGAGAGCG AG CTGCGGCANAAAC  C G GCGGCGGCGGCGGGCAGCTGCAGTNGTCGGACAGCCCGGAGGCGACGTCGATGGTGCTCG CCGCGTGCCCNCCTTGCTTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU161052             [            TCTCTGTCATTCTGCAGCTAGCTGAAAAAATCTTCAGAGAATCATCAGTTCATCACAAAAGACTATCAAGCGAGGCAAGTACGTGACGGTGACTGTGATGAGCGGCGGCGGCGGCGGCGGGAGGGGGATGACGAGGGGGCTGGACCTGAAGCTGAACCTGTCGCTG CCGGCGGTGGCGCGCGCGGTGTCGCCGGCGGCGGA CGACGAGTCGTCGCCGAGCTCGTGCCTGTCGTCGGAGAGCG AG CTGCGGCAGCAGCA C G GCGGCGGCGGCGGGCAGCTGCAGTGGTCGGACAGCCCGGAGGCGACGTCGATGGTGCTCGCCCGCGTG CCGCGCTGNTTTCTCTACGTCATGCTCGCCGAGGCCGACCCGCGCTTGCCCAAGTGCCGGAGCCCC                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU065936             [                 GTCATTCTGCAGCTAGCTGAAAAAATCTTCAGAGAATCATCAGTTCATCACAAAAGACTATCAAGCGAGGCAAGTACGTGACGGTGACTGTGATGAGCGGCGGCGGCGGCGGCGGGAGGGGGATGACGAGGGGGCTGGACCTGAAGCTGAACCTGTCGCTG CCGGCGGTGGCGCGCGCGGTGTCG CGGCGG GGA CGACGAGTCGTCGCCGAGCTCGTGCCTGTCGTCGGAGAGCG AG CTGCGGCA NAG A CTG GCGGCGNCGGCGGGCANCTGCAGTGGTCGGACANCCCGGA GCGACGTCGATGGTGCTCG CCGCGTGCCCG GCTGCTTCCTCTACGTCATGCTCGCCGAGGCCGACCCGCGCTGCCCCAAGTGCCGGAGCCCCGTCATCCTCGACTTCCTCCATGC                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU065914             [                 GTCATTCTGCAGCTAGCTGAAAAAATCTTCAGAGAATCATCAGTTCATCACAAAAGACTATCAAGCGAGGCAAGTACGTNACGGTGACTGTAATGAGCGGCGGCGGCGGCGGCGGGAGGGGGATGACGAGGGGGCTGGACCTGAAGCTGAACCTGTNGCTG CCGGCGGTGGCGCGCNCGGTGTCGCCGGCGG GGA CGACGAGTCTTTGCNGAGCTCGTNCCTGTNNTCGGAAAGCA AG CTNCGGCA CA AA CTG GCGGCGGCGGCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU091575             [                                                                                                                                                                 cgcgttccgTGTAGCTGCCCGGCGGTGGCGCGCNCGGTGTC CCGGCGGCGGA CGACGAGTCGTCGCCGAGCTCGTGCCTGTCGTCGGAGAGCGAAG CTGCGGCAGCAGCA C G GCGGCGGCGGCGGGCAGCTGCAGTGGTCGGACAGCCCGGAGGCGACGTCGATGGTGCTCG CCGCGTGCACGCGCTGCTTCCTCTACGTCATGCTCGCCGAGGCCGACCCGCGCTGCCCCAAGTGCCGGAGCCCCGTCATCCTCGACTTCCTCCACGCCGGCGGCGGCGGCGGCATCAACGCCGACGGCCGCCGCCACNGGAGGGGATGAACATGGCCATGACCATGATGGCAGCAAGAGATCGAGGAGAAGCATCTACACGCTTCTTTGATCGCGCAGAGGCATCAGGAATTCAGGATCAAGAAGAACAACGAGAAGAAGAAATCTCACCTTGATGATGATCACAGTTAATTAGTTCTAGGCCCCATTAGTTTCTTCTCAATTAGCAGCAGTAGTATCATGATTAATCAGCTCGATCCTCTGCAGATTATGCAGTATAACCATGATTTATAAGCATCAATCTATATATTATCACACGTAGTATCATCGATTCGATCGATCCCAGCAAAAAAAAAA]
[+] EMBL C28159               [                                                                                                                                                                                    CGGCGGTGGCGCGCGCGGTGTCGCCGGCGGGGNA CGACGAGTCGTCGCCGAGCTCGTGCCTNTCGTCGGAGAGCG AGTCTNCGGCA CAGAACC GNGCGGCGGCGGCGGGCAGCTNCAGTGGTCGGACANCCCGGAGGCGACGTCGATGGTGCTCG CCGCGTGCCCGCNCTGCTTCCTCTACGTCATGCTCGCCGAGGCCGACCCGCGCTGCCCCAAGTNCCGGAGCCCCGTCATCCTCGACTTCCTCCACGNCGGCGG GGCGGCGGCATCAACGNCGACGGCCGNCGCCACCGGAGGGGATGAACATGGNCATGACCATGATGGCAGCAAGAGATTGAGGAGA                                                                                                                                                                                                                                                                          ]
[+] EMBL AU161053             [                                                                                                                                                                                                                                                   TCGTCGAAGAGCG AG  TGCGGCAGCAGCA C G GCGCCGCCGGC GGCAGTTGCAGTGGTCGGACAGCCCGNAGGCGACGTCGATGGTGCTCG CCGCGTGCCCGCGCTGCTTCCTNTACGTCATGCTCGCCGAGGCCGACCCGCGCTGCCCCAAGTGCCGGAGCCCCGTCATCCTCGACTTCCTCCACGCCGGCGGCGGCGGCGGCATCAACGCCGACGGCCGCCGCCACCGGAGGGGATGAACATGGCCATGACCATGATGGCAGCAAGAGATCGAGGAGAAGCATCTACACGCTTCTTTGATCGCGCAGAGGCATCAGGAATTCAGGATCAAGAAGAACAACGAGAAGAAGAAATCTCACCTTGATGATGATCACAGTTAATTAGTTCTAGGCCCCATTAGTTTCTTCTCAATTAGCAGCAGTAGTATCATGATTAATCAGCTCGATCCTCTGCAGATTATGCAGTATAACCATGATTTATAAGCATCAATCTATATATTATCACAaaaa                                    ]




>consensus_11624#0
CACATCCTCTCATCTCTGTCATTCTGCAGCTAGCTGAAAAAATCTTCAGAGAATCATCAG
TTCATCACAAAAGACTATCAAGCGAGGCAAGTACGTGACGGTGACTGTGATGAGCGGCGG
CGGCGGCGGCGGGAGGGGGATGACGAGGGGGCTGGACCTGAAGCTGAACCTGTCGCTGCC
GGCGGTGGCGCGCGCGGTGTCGCCGGCGGCGGACGACGAGTCGTCGCCGAGCTCGTGCCT
GTCGTCGGAGAGCGAGCTGCGGCAGCAGCACGGCGGCGGCGGCGGGCAGCTGCAGTGGTC
GGACAGCCCGGAGGCGACGTCGATGGTGCTCGCCGCGTGCCCGCGCTGCTTCCTCTACGT
CATGCTCGCCGAGGCCGACCCGCGCTGCCCCAAGTGCCGGAGCCCCGTCATCCTCGACTT
CCTCCACGCCGGCGGCGGCGGCGGCATCAACGCCGACGGCCGCCGCCACCGGAGGGGATG
AACATGGCCATGACCATGATGGCAGCAAGAGATCGAGGAGAAGCATCTACACGCTTCTTT
GATCGCGCAGAGGCATCAGGAATTCAGGATCAAGAAGAACAACGAGAAGAAGAAATCTCA
CCTTGATGATGATCACAGTTAATTAGTTCTAGGCCCCATTAGTTTCTTCTCAATTAGCAG
CAGTAGTATCATGATTAATCAGCTCGATCCTCTGCAGATTATGCAGTATAACCATGATTT
ATAAGCATCAATCTATATATTATCACACGTAGTATCATCGATTCGATCGATCCCAGCAAA
AAAAAAA

consensusID : consensus_11624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [GTGCATTCGNCCGTTGCACCGGCTTGATTCCTCTACGTCATGCTTNGCCGAAGGCCTGANCCTCAGCGCTTGCCCCAAAGTGCCGGAGCCCCTGTTCATCCTTGACTTTCCTTCCCAANCCGGCGCGGCGGCCGGCATCAACGCCGACGGCCTNCCAGCCACCGGAGGGGATGAACATGGCCCATGACCATGATGGCAGCAAGAGATCGAGGAGAAGCATCTACACGCTTCTTTGATCGCGCAGAGGCATCAGGAATTCAGGATCAAGAAGAACAACGAGAAGAAGAAATCTCACCTTGATGATGATCACAGTTAATTAGTTCTAGGCCCCATTAGTTTCTTCTCAATTAGCAGCAGTAGTATCATGATTAATCAGCTCGATCCTCTGCAGATTATGCAGTATAACCATGATTTATAAGCATCAATCTATATATTATCACACGTAGTAAA]

[+] EMBL AU101842             [GTGCATTCGNCCGTTGCACCGGCTTGATTCCTCTACGTCATGCTTNGCCGAAGGCCTGANCCTCAGCGCTTGCCCCAAAGTGCCGGAGCCCCTGTTCATCCTTGACTTTCCTTCCCAANCCGGCGCGGCGGCCGGCATCAACGCCGACGGCCTNCCAGCCACCGGAGGGGATGAACATGGCCCATGACCATGATGGCAGCAAGAGATCGAGGAGAAGCATCTACACGCTTCTTTGATCGCGCAGAGGCATCAGGAATTCAGGATCAAGAAGAACAACGAGAAGAAGAAATCTCACCTTGATGATGATCACAGTTAATTAGTTCTAGGCCCCATTAGTTTCTTCTCAATTAGCAGCAGTAGTATCATGATTAATCAGCTCGATCCTCTGCAGATTATGCAGTATAACCATGATTTATAAGCATCAATCTATATATTATCACACGTAGTAAA]




>consensus_11624#1
GTGCATTCGNCCGTTGCACCGGCTTGATTCCTCTACGTCATGCTTNGCCGAAGGCCTGAN
CCTCAGCGCTTGCCCCAAAGTGCCGGAGCCCCTGTTCATCCTTGACTTTCCTTCCCAANC
CGGCGCGGCGGCCGGCATCAACGCCGACGGCCTNCCAGCCACCGGAGGGGATGAACATGG
CCCATGACCATGATGGCAGCAAGAGATCGAGGAGAAGCATCTACACGCTTCTTTGATCGC
GCAGAGGCATCAGGAATTCAGGATCAAGAAGAACAACGAGAAGAAGAAATCTCACCTTGA
TGATGATCACAGTTAATTAGTTCTAGGCCCCATTAGTTTCTTCTCAATTAGCAGCAGTAG
TATCATGATTAATCAGCTCGATCCTCTGCAGATTATGCAGTATAACCATGATTTATAAGC
ATCAATCTATATATTATCACACGTAGTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11624#0      CACATCCTCTCATCTCTGTCATTCTGCAGCTAGCTGAAAAAATCTTCAGAGAATCATCAG 60
consensus_11624#1      ------------------------------------------------------------
                                                                                   

consensus_11624#0      TTCATCACAAAAGACTATCAAGCGAGGCAAGTACGTGACGGTGACTGTGATGAGCGGCGG 120
consensus_11624#1      ------------------------------------------------------------
                                                                                   

consensus_11624#0      CGGCGGCGGCGGGAGGGGGATGACGAGGGGGCTGGACCTGAAGCTGAACCTGTCGCTGCC 180
consensus_11624#1      ------------------------------------------------------------
                                                                                   

consensus_11624#0      GGCGGTGGCGCGCGCGGTGTCGCCGGCGGCGGACGACGAGTCGTCGCCGAGCTCGTGCCT 240
consensus_11624#1      ------------------------------------------------------------
                                                                                   

consensus_11624#0      GTCGTCGGAGAGCGAGCTGCGGCAGCAGCACGGCGGCGGCGGCGGGCAGCTGCAGTGGTC 300
consensus_11624#1      ------------------------------------------------------------
                                                                                   

consensus_11624#0      GGACAGCCCGGAGGCGACGTCGATGGTGCTCGCCGCGTGC-CCGCGCTGCTTCCTCTACG 359
consensus_11624#1      -----------------------GTGCATTCGNCCGTTGCACCGGCTTGATTCCTCTACG 37
                                                *   *** *   *** ***   ** **********

consensus_11624#0      TCATGCT-CGCCGAGG--CCGACCC---GCGCT-GCCCCAA-GTGCCGGAGCCCCG--TC 409
consensus_11624#1      TCATGCTTNGCCGAAGGCCTGANCCTCAGCGCTTGCCCCAAAGTGCCGGAGCCCCTGTTC 97
                       *******  ***** *  * ** **   ***** ******* *************   **

consensus_11624#0      ATCCTCGACTTCCT---CCACGCCGGCGGCGGCGGC-GGCATCAACGCCGACGGCCGCC- 464
consensus_11624#1      ATCCTTGACTTTCCTTCCCAANCCGGCG-CGGCGGCCGGCATCAACGCCGACGGCCTNCC 156
                       ***** ***** *    ***  ****** ******* *******************  * 

consensus_11624#0      -GCCACCGGAGGGGATGAACATGGCC-ATGACCATGATGGCAGCAAGAGATCGAGGAGAA 522
consensus_11624#1      AGCCACCGGAGGGGATGAACATGGCCCATGACCATGATGGCAGCAAGAGATCGAGGAGAA 216
                        ************************* *********************************

consensus_11624#0      GCATCTACACGCTTCTTTGATCGCGCAGAGGCATCAGGAATTCAGGATCAAGAAGAACAA 582
consensus_11624#1      GCATCTACACGCTTCTTTGATCGCGCAGAGGCATCAGGAATTCAGGATCAAGAAGAACAA 276
                       ************************************************************

consensus_11624#0      CGAGAAGAAGAAATCTCACCTTGATGATGATCACAGTTAATTAGTTCTAGGCCCCATTAG 642
consensus_11624#1      CGAGAAGAAGAAATCTCACCTTGATGATGATCACAGTTAATTAGTTCTAGGCCCCATTAG 336
                       ************************************************************

consensus_11624#0      TTTCTTCTCAATTAGCAGCAGTAGTATCATGATTAATCAGCTCGATCCTCTGCAGATTAT 702
consensus_11624#1      TTTCTTCTCAATTAGCAGCAGTAGTATCATGATTAATCAGCTCGATCCTCTGCAGATTAT 396
                       ************************************************************

consensus_11624#0      GCAGTATAACCATGATTTATAAGCATCAATCTATATATTATCACACGTAGTATCATCGAT 762
consensus_11624#1      GCAGTATAACCATGATTTATAAGCATCAATCTATATATTATCACACGTAGTAAA------ 450
                       ****************************************************        

consensus_11624#0      TCGATCGATCCCAGCAAAAAAAAAA 787
consensus_11624#1      -------------------------