These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 976 fasta sequence [CCATCACAGATCCTAAATCCACAAATTCACACAAAAATTTCACATCACAACACAAATTCCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCACAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCTCCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGGCGCCGGCTCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTCCCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCGCCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAGAGTGAAGGGAGGCTGGCGGCGGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGGATAGAGGAGGGAGGCAGAGG-GA--CCGTGCGCTACCGCGCACTTGCCTTCCGTCACCGTCGCCGCCGCGCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCCTGTGGGGAGTGAGTAGGAGGGTGCATCTGGAGGGAGGAAGAGGAACAAGAGGATAAGGACTAGGTGGATAAGGAGTGGTGGGTGGTGATTTTTTAATGGGCGGTGATATTTTTAAGTGTGTGATTTTTTTAAGTGCGGCGTTTAAACGCTGGCGGTAGGTTAAGAAGCAATAGGGTTATTTTTTGAAATGGACTTCTTAACCAACCTCAAGCGAAAACGGATTTTCACTTGTGGTCCTAGACTCACCGTCGGCGAAAATGAATTTTCAC] [-] EMBL AK066116 [CCATCACAGATCCTAAATCCACAAATTCACACAAAAATTTCACATCACAACACAAATTCCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCACAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCTCCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGGCGCCGGCTCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTCCCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCGCCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAGAGTGAAGGGAGGCTGGCGGCGGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGGATAGAGGAGGGAGGCAGAGG GA CCGTGCGCTACCGCGCACTTGCCTTCCGTCACCGTCGCCGCCGCGCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCCTGTGGGGAGTGAGTATGAGGGTGCATCTGGAGGGAGGAAGAGGAACAAGAGGA ] [-] EMBL AU166004 [ tttttTTTCACATCACAACACAAATTCCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCACAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCTCCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGGCGCCGGCTCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTCCCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCGCCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAGAGTGAAGGGAGGCTGGCGGCGGTGGAGAAAGAAGG ] [+] EMBL CB645510 [ ACACAAATTCCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCACAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCTCCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGGCGCCGGCTCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTCCCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCGCCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAAAGTGAAGGGAGGCTGGCGGCGGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGGATAGAGGAGGGAGGCAGAGG GA CCGTGCGCTACCGCGCACTTGCCTTCCGTCACCGTCGCCGCCGCGCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCCTGTGGGGAGTGAG ] [-] EMBL CB645509 [ CACAAATTCCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCACAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCTCCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGGCGCCGGCTCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTCCCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCGCCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAGAGTGAAGGGAGGCTGGCGGCGGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGGATAGAGGAGGGAGGCAGAGG GA CCGTGCGCTACCGCGCACTTGCCTTCCGTCACCGTCGCCGCCGCGCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGAAGGCTGTGG ] [+] EMBL AK108415 [ CCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCACAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCTCCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGGCGCCGGCTCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTCCCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCGCCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAGAGTGAAGGGAGGCTGGCGGCGGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGGATAGAGGAGGGAGGCAGAGG GA CCGTGCGCTACCGCGCACTTGCCTTCCGTCACCGTCGCCGCCGCGCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCCTGTGGGGAGTGAGTAGGAGGGTGCATCTGGAGGGAGGAAGAGGAACAAGAGGATAAGGACTAGGTGGATAAGGAGTGGTGGGTGGTGATTTTTTAATGGGCGGTGATATTTTTAAGTGTGTGATTTTTTTAAGTGCGGCGTTTAAACGCTGGCGGTAGGTTAAGAAGCAATAGGGTTATTTTTTGAAATGGACTTCTTAACCAACCTCAAGCGAAAACGGATTTTCACTTGTGGTCCTAGACTCACCGTCGGCGAAAATGAATTTTCAC] [-] EMBL C74140 [ CGCGCAACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCAACTCAGCAATGGAGANTGAAGGGAGGNTGGCGGCNGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGNATAGAGGAGGGAGGCAGAGGNGAANCC CG TACCGCGNACTTGCCTTCCGTCACCGTCGCCGCCGCG G TGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCCTGTGGGGAGTGAGTAGGA ] consensusID : consensus_11651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence [TTTTTTTTCCACAAATTAACACAAAAATTTCACATTGCAGCACAAATTCTACAAGTTCCACATCACAGATCAAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGACATCAAAGATCGAGCACAAAAAGTTTACATCACGAAGATTAAGAGGCGAGGATGGATTTGTTGCTCCCGAGGGAGGGCGTGGATGGCCGGCGGCGGATCCGCTCTCCCGGGGCTCGCCTGCGCAGCTCTACTCCCCACTGCCCCTCCCACACGCCGGTGCTGCTGAGCACCGCAACTGCCCCCTCCCCCGTGCCACTCCCAAGGACCGGTGGCGGTGGATCTGCCCTCCCAAGGCTCGCCGGAGCTAGATCCGCACCTCACCGCTGAGAACCGCCGCCACCCTCTTCCCCGTGCCACTGCCGCACCTCCTTCCCCCGCCGCCGCCTCCTTTCCCACACAGCGGTGGGGAGTGAAGGGAGGCTAGCGGCGGTGGAGAGAGAAGGGAGGCTGGCGGCCGTGGAGAGAGAAGGGAGGAGGGAGAGAGGCGGAGGGACCGTGCNACCGGCNCGCTCGCCTTCCGTCGCCGCNACACGTTCTGTCGCCGTCGCNGCNACACGCTGCTGTTGGAGCGCCGCGCCCCGCCACCCGAGAAACGCCGCCGGAGCAACCGCCGCTGCC] [-] EMBL AU164017 [TTTTTTTTCCACAAATTAACACAAAAATTTCACATTGCAGCACAAATTCTACAAGTTCCACATCACAGATCAAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGACATCAAAGATCGAGCACAAAAAGTTTACATCACGAAGATTAAGAGGCGAGGATGGATTTGTTGCTCCCGAGGGAGGGCGTGGATGGCCGGCGGCGGATCCGCTCTCCCGGGGCTCGCCTGCGCAGCTCTACTCCCCACTGCCCCTCCCACACGCCGGTGCTGCTGAGCACCGCAACTGCCCCCTCCCCCGTGCCACTCCCAAGGACCGGTGGCGGTGGATCTGCCCTCCCAAGGCTCGCCGGAGCTAGATCCGCACCTCACCGCTGAGAACCGCCGCCACCCTCTTCCCCGTGCCACTGCCGCACCTCCTTCCCCCGCCGCCGCCTCCT ] [-] EMBL OSC2501 [ TCTTCCCCGTGCNACTGCCGCACCTCCTTCNCCCGCCGCCGCCTCCATTCCCACACAGCGGTGGGGAGTGAAGGGAGGCTAGCGGCGGTGGAGAGAGAAGGGAGGCTGGCGGCCGTGGAGAGAGAAGGGAGGAGGGAGAGAGGCGGAGGGACCGTGCNACCGGCNCGCTCGCCTTCCGTCGCCGCNACACGTTCTGTCGCCGTCGCNGCNACACGCTGCTGTTGGAGCGCCGCGCCCCGCCACCCGAGAAACGCCGCCGGAGCAACCGCCGCTGCC] consensusID : consensus_11651#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [TTTTTTTTTTTTTTTTTTTTTCNACAAGTTCCACATCACAGATCAAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGACATCAAAGATCGAGCACAAAAAGTTTACATCACGAAGATTAAGAGGCGAGGATGGATTTGTTGCTCCCGAGGGAGGGCGTGGATGGCCGGCGGCGGATCCGCTCTCCCGGGGCTCGCCTGCGCANTCTACTCCCCACTGCCCCTCCCACACGCCGGTGCTGCTGAGCACCGCAACTGCCCCCTCCCCCGTGCNACTCCCAAGGACCGGTGGCGGTGGATCTGCCCTCCCAAGGCTCGNCGGAGCTAGATCCGCACCTCANCGCTGAGAANCGTCGGCAACCTCTTCCCCGTGGCAATGGCGNACT] [-] EMBL C97153 [TTTTTTTTTTTTTTTTTTTTTCNACAAGTTCCACATCACAGATCAAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGACATCAAAGATCGAGCACAAAAAGTTTACATCACGAAGATTAAGAGGCGAGGATGGATTTGTTGCTCCCGAGGGAGGGCGTGGATGGCCGGCGGCGGATCCGCTCTCCCGGGGCTCGCCTGCGCANTCTACTCCCCACTGCCCCTCCCACACGCCGGTGCTGCTGAGCACCGCAACTGCCCCCTCCCCCGTGCNACTCCCAAGGACCGGTGGCGGTGGATCTGCCCTCCCAAGGCTCGNCGGAGCTAGATCCGCACCTCANCGCTGAGAANCGTCGGCAACCTCTTCCCCGTGGCAATGGCGNACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11651#1 TTTTTTTTCCACAAATTAACACAAAAATTTCACATTGCAGCACAAATTC----TACAAGT 56 consensus_11651#2 ---------------------------TTTTTTTTTTTTTTTTTTTTTC----NACAAGT 29 consensus_11651#0 ---CCATCACAGATCCTAAATCCACAAATTCACACAAAAATTTCACATCACAACACAAAT 57 ** ** **** * consensus_11651#1 TCCACATCACAGATCAAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGACATCA 116 consensus_11651#2 TCCACATCACAGATCAAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGACATCA 89 consensus_11651#0 TCCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCA 117 *************** ************************************** ***** consensus_11651#1 AAGATCGAGCACAAAAAGTTTACATCACGAAGATTAAGAGGCGAGGATGGATTTGTTGCT 176 consensus_11651#2 AAGATCGAGCACAAAAAGTTTACATCACGAAGATTAAGAGGCGAGGATGGATTTGTTGCT 149 consensus_11651#0 CAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCT 177 **************** ********* ************ *********** ****** consensus_11651#1 CCCGAGGGAGGGCGTGGATGGCCGGCGGCGGATCCGCTCTCCCGGGGCTCGCCTGCGCAG 236 consensus_11651#2 CCCGAGGGAGGGCGTGGATGGCCGGCGGCGGATCCGCTCTCCCGGGGCTCGCCTGCGCAN 209 consensus_11651#0 CCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGG-----CGCCGGC---- 228 *** ********************** ************ ** * **** ** consensus_11651#1 CTCTACTCCCCACTGCCCCTCCCACACGCCGGTGCTGCTGAGCACCGCAACTGCCCCCTC 296 consensus_11651#2 -TCTACTCCCCACTGCCCCTCCCACACGCCGGTGCTGCTGAGCACCGCAACTGCCCCCTC 268 consensus_11651#0 -TCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTC 287 *** ******** *********** ********* ** **** **** **** ****** consensus_11651#1 CCCC-GTGCCACTCCCAAGGACCGGTGGCGGTGGATCTGCCCTCCCAAGGCTCGCCGGAG 355 consensus_11651#2 CCCC-GTGCNACTCCCAAGGACCGGTGGCGGTGGATCTGCCCTCCCAAGGCTCGNCGGAG 327 consensus_11651#0 CCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCG 347 **** **** ***** ***** ** ***** ***** * ***** ******* *** * consensus_11651#1 CTAGATCCGCACCTCACCGCTGAGAACCGCCGCCACCCTCTTCCCCGTGCCACTGCCGCA 415 consensus_11651#2 CTAGATCCGCACCTCANCGCTGAGAANCGTCGGCAACCTCTTCCCCGTGGCAATGGCGNA 387 consensus_11651#0 CCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCA 407 * ********* *** * ***** * ** * ******** * ** ** ** * consensus_11651#1 CCTCCTTCCCC-CGCCGCCGCCTCCTTTCCCACACAGCGGTGGGGAGTGAAGGGAGGCTA 474 consensus_11651#2 CT---------------------------------------------------------- 389 consensus_11651#0 CCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAGAGTGAAGGGAGGCTG 467 * consensus_11651#1 GCGGCGGTGGAGAGAGAAGGGAGGCTGGCGGCCGTGGAGAGAGAAGGGAGGAGGGAGAGA 534 consensus_11651#2 ------------------------------------------------------------ consensus_11651#0 GCGGCGGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGGATAGA 527 consensus_11651#1 GGCGGAGGGACCGTGCNACCGGCNCGCTCGCCTTCCGTCGCCGCNACACGTTCTGTCGCC 594 consensus_11651#2 ------------------------------------------------------------ consensus_11651#0 GGAGGGAGGCAGAGGGACCGTGCGCTACCGCGCACTTGCCTTCCGTCACCGTCGCCGCCG 587 consensus_11651#1 GTCGCNGCNACACGCTGCTGTTGGAGCGCCGCGCCCCGCCACCCGAGAAACGCCGCCGGA 654 consensus_11651#2 ------------------------------------------------------------ consensus_11651#0 CGCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCC 647 consensus_11651#1 GCAACCGCCGCTGCC--------------------------------------------- 669 consensus_11651#2 ------------------------------------------------------------ consensus_11651#0 GCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCC 707 consensus_11651#1 ------------------------------------------------------------ consensus_11651#2 ------------------------------------------------------------ consensus_11651#0 TGTGGGGAGTGAGTAGGAGGGTGCATCTGGAGGGAGGAAGAGGAACAAGAGGATAAGGAC 767 consensus_11651#1 ------------------------------------------------------------ consensus_11651#2 ------------------------------------------------------------ consensus_11651#0 TAGGTGGATAAGGAGTGGTGGGTGGTGATTTTTTAATGGGCGGTGATATTTTTAAGTGTG 827 consensus_11651#1 ------------------------------------------------------------ consensus_11651#2 ------------------------------------------------------------ consensus_11651#0 TGATTTTTTTAAGTGCGGCGTTTAAACGCTGGCGGTAGGTTAAGAAGCAATAGGGTTATT 887 consensus_11651#1 ------------------------------------------------------------ consensus_11651#2 ------------------------------------------------------------ consensus_11651#0 TTTTGAAATGGACTTCTTAACCAACCTCAAGCGAAAACGGATTTTCACTTGTGGTCCTAG 947 consensus_11651#1 ----------------------------- consensus_11651#2 ----------------------------- consensus_11651#0 ACTCACCGTCGGCGAAAATGAATTTTCAC 976 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||