These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1471 fasta sequence [AGGAGAGAGAGAGAGAGAGAAGAGGAGAGGTTGGTGGCAGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCCATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGCTCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGATGTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCGCTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCATGAGTTGGGAGCGGCTCCAATTTCATCCGATGTGCCCGTGCCATCTGTTGATGAGCTTGTGGATCAAGTCGCGGATGTTCTTGATTTCTTCGGATTAGGATCTGTGATGTGTTTGGGTGTCACTGCC-GGTGCCTACA-TTCTCACCCTC-TTTGCAACAAAATACCGGGATAGAGTGATTGGCCTTATGCTAGTTTCGCCGCTATGCAAAGCCCCTTCTTGGAGCGAGTGGTTGTACAATAAGGTATTATTAAACTTGCTTTACTATTATGGGAGTCGTGGGCTAGTCAAGGAATGCTTGCTTCAGCGGTATTTTAGCACGGAAGTTCGTGGGAATGGACAAGACCCTGAATCAGAGATTGTGCAAGCCTGTAGAAGTTTACTTCATGAGCGACAGGGATCTAATGTATGGCGATTCCTTCAGGCGATAAACGAGAGACATGACCTGACGGAAGCGTTGAAGAAGCTTCAGTGTCGGACACTGATTTTTGTGGGAGAGAACTCACAGTT-CCACG-ACGACGCAGT-CCATATGACCACAAAGCTAGACCGGAGATATTGCG-CCCTAGT-CGAGGTT-CAGGCATGCGGGTCACT-CGTCACCGAGGAGCAACCGCACGCGATGTTGAT-CCCCAT-GGAGTACTT-CCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATAT-CGCCTGAACTTCTGTCACCGGAGAG-CATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCCTGACAATACAAGCTCATGAAGGTGGAACACTG-CATGGGCTAGTCTGAATTCAGATGGTCACT-GCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGTTAACTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGGAGAA-GGGTGGGTCTGTTTGTTCATATGTTTGTAGTCAGAAACACATGTATATCTCATCACATCGTTCCATACGAG-AAAAAGAAGAGAGAAAATGATAGAAGCAGAAAAAAAAAAA] [+] EMBL AK100731 [AGGAGAGAGAGAGAGAGAGAAGAGGAGAGGTTGGTGGCAGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCCATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGCTCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGATGTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCGCTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCATGAGTTGGGAGCGGCTCCAATTTCATCCGATGTGCCCGTGCCATCTGTTGATGAGCTTGTGGATCAAGTCGCGGATGTTCTTGATTTCTTCGGATTAGGATCTGTGATGTGTTTGGGTGTCACTGCC GGTGCCTACA TTCTCACCCTC TTTGCAACAAAATACCGGGATAGAGTGATTGGCCTTATGCTAGTTTCGCCGCTATGCAAAGCCCCTTCTTGGAGCGAGTGGTTGTACAATAAGGTATTATTAAACTTGCTTTACTATTATGGGAGTCGTGGGCTAGTCAAGGAATGCTTGCTTCAGCGGTATTTTAGCACGGAAGTTCGTGGGAATGGACAAGACCCTGAATCAGAGATTGTGCAAGCCTGTAGAAGTTTACTTCATGAGCGACAGGGATCTAATGTATGGCGATTCCTTCAGGCGATAAACGAGAGACATGACCTGACGGAAGCGTTGAAGAAGCTTCAGTGTCGGACACTGATTTTTGTGGGAGAGAACTCACAGTT CCACG ACGACGCAGT CCATATGACCACAAAGCTAGACCGGAGATATTGCG CCCTAGT CGAGGTT CAGGCATGCGGGTCACT CGTCACCGAGGAGCAACCGCACGCGATGTTGAT CCCCAT GGAGTACTT CCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATAT CGCCTGAACTTCTGTCACCGGAGAG CATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCCTGACAATACAAGCTCATGAAGGTGGAACACTG CATGGGCTAGTCTGAATTCAGATGGTCACT GCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGTTAACTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGGAGAA GGGTGGGTCTGTTTGTTCATATGTTTGTAGTCAGAAACACATGTATATCTCATCACATCGTTCCATACGAG AAAAAGAAGAGAGAAAATGATAGAAGCAGAA ] [+] EMBL CB681192 [ CGCGGCCGTTCTTGATTTCTTCGGATTAGGATCTGTGATGTGTTTGGGTGTCACTGCCGGGTGCCTACATTTCTCACCCTCATTTGCAACAAAATACCGGGATACAGTGATTGGCCTTATGCTAGTTTCGCCGCTATGCAAAGCCCCTTCTTGGAGCGAGTGGCTGTACAATAAGGAATTATTAAACTTGCTTTACTATTATGGGAGTCGGGGGCTAATCAAGGAATGCTTGCTTCACCGGTATTTTATCACGGAAGTTCGTGGGAATGGACAAGACCCTGAATCAGAGATTGTGCAAGCCTGTATAAGTTTACTTCATGAGCGACAGGGATCTAATGTATGGCGATTCCTTCATGCGATAAACGACAGACATGACCTGACGGAAGCGTTGAAGAAGCTTCAGTGTCTGACACTGATTTTTGTGGGAGAGAACTCACAGTT CCACA ACGACTCAGT CCATATGACCACAAAGCTAGACCGGAGATATTGCG CCCTATT CGAGGTT CAGGCATGCGGGTCACT CGTCACCGAGGAGCAACCGCACGCGATGTTGAT CCCCAT GGAGTACTT CCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATAT CGCCTGAACTTCTGTCACCGGAGAG CATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTT ] [+] EMBL CA764497 [ CCCTGAATCAGAGATTGTGCAAGCCTGTAGAAGTTTACTTCATGAGCGACAGGGATCTAATGTATGGCGATTCCTTCAGGCGATAAACGAGAGACATGACCTGACGGAAGCGTTGAAGAAGCTTCAGTGTCGGACACTGATTTTTGTGGGAGAGAACTCACAGTT CCACG ACGACGCAGT CCATATGACCACAAAGCTAGACCGGAGATATTGCG CCCTAGT CGAGGTT CAGGCATGCGGGTCACT CGTCACCGAGGAGCAACCGCACGCGATGTTGAT CCCCAT GGAGTACTT CCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATAT CGCCTGAACTTCTGTCACCGGAGAG CATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCCTGACAATACAAGCTCATGAAGGTGGAACACTG CATGGGCTAGTCTGAATTCAGATGGTCACT GCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGTTAACTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGAAGAANGGGGGGGTCTGGTTGGTCATATGGTTGGAGGCAGAAACACATGTATATCTCATCACATCGGTNCATACGAGAAAAAAGAAGAGAGAAAAT ] [+] EMBL C99713 [ tcCATTNTCGGACACTGATTTTTGTGGGAGAGAACTCACAGTTCCCACGAACGACGCAGTCCCATATGACCACAAAGCTAGACCGGAGATATTGCGCCCCTAGTCCGAGGTTCCAGGCATGCGGGTCACT CGTCACCGAGGAGCAACCGCACGCGATGTTGAT CCCCAT GGAGTACTT CCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATAT CGCCTGAACTTCTGTCACCGGAGAGCCATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCCTGACAATACAAGCTCATGAAGGTGGAACACTG CATGGGCTAGTCTGAATTCAGATGGTCACT GCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGTTAACTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGGAGAA GGGTGGGTCTGTTTGTTCATATGTTTGTAGTCAGAAACACATGTATATCTCATCACATCGTTCCATACGAG AAAAAGAAGAGAGAAAATGATAGAAGCAGAAAAAAAAAAA] [+] EMBL AU094682 [ AGATATTGCN CCCTAGTCCGAGGTTNCAGGCATGCGGGTCACTCCGTCACCGAGGAGCANCCGCACGCGATTTTGAT CCCCAT GGAGTACTT CCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATATCCNCCTGAACTTCTGTCACCGGAGAG CATGGGAGTGAAGCTGAANCCCATCAAGACTCGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGNCCTGACAATACAAGCTCATGAAGGTGGAACACTG CATGGGCTAGTCTGAATTCAGATGGTCACT GCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGTTAACTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGGAGAA GGGTGGGTCTGTTTGTTCATATGTTTGTAGTCAGAAACACATGTATATCTCATCACATCGTTCCATACGAG AAAAAGAAGAGAGAAAATGATAGAAGCAGAAAAAAAAAAA] [-] EMBL CB681193 [ CTAGT GGAGGTT CAGGCATGTGGGTCACT AGTCACCGAGGAGCAACCGCATGCGATGTTGAT CCCCAT GGAGTATTT CCTCATGGGATATGGGCTTTACAGTCCTTCCCAGCTGGATAGCAGCCCCCGGAGCACATTGAACCCATTCTGTATAT CGCCTGAACTTCTGTCACCGGAGAG CATGGGAGTGAAGTTGAAGCCCATCAAGACTAGGATTTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCTTTACAATTCAAGCTCATGAAGGTGGAACACTG CATGGGCTAGTCTGAATTCAGATGGTCACTCACCACCAAGTTTTGGTCCCTCCAGTGATGCAGGTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGTTAATTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGGAGAA GGGTGGGTCTGTTTGTTCATATGTTTGTAGTCAGAAACACATGTATATCTCATCACATCGTTCCTTATGAG AAAAAGA ] [+] EMBL BI806657 [ GGAGCCA CGCACGCGATTGTGATCCCCCATGGGAG ACTTCCCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATAT CGCCTGAACTTCTGTCACCGGAGAG CATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTCGCTCAAAGTNTAGCA TGGCCAATGAATGAATCCTTGATGGCCTGACAATACAAGCTCATGAAGGTGGAACCCTGCCATGGGCTAGTCTGAATTCAGATGGTCACT GCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAA ] consensusID : consensus_11676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 447 fasta sequence [GGAGGAGGAGGAGGAGGAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCCATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGCTCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGATGTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCGCTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCAATGAGTTGGGGAGCGGCTCCAATTTTTCAATCCCGGAATTGGTTGCCCCGTGGCCATCTTGTTTGAATGAGCTTTGTGGGATCAAAGTCGGCGGAATGTTCTTTGAATTTCTTTCGGATTAAGGGATCCTGTNGAATGGTNGTT] [+] EMBL AU064292 [GGAGGAGGAGGAGGAGGAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCCATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGCTCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGATGTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCGCTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCAATGAGTTGGGGAGCGGCTCCAATTTTTCAATCCCGGAATTGGTTGCCCCGTGGCCATCTTGTTTGAATGAGCTTTGTGGGATCAAAGTCGGCGGAATGTTCTTTGAATTTCTTTCGGATTAAGGGATCCTGTNGAATGGTNGTT] [+] EMBL C91616 [GGAGGAGGAGGAGGAGGAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCCATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGCTCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGATGTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCGCTGTTGCTTCACAATTTTTGTATTTACCACATNACTCCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11676#0 AGGAGAGAGAGAGAGAGAGAAGAGGAGAGGTTGGTGGCAGAGGAGGAGGAGGAGGAGGAG 60 consensus_11676#1 --------------------------------------------GGAGGAGGAGGAGGAG 16 **************** consensus_11676#0 GAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCC 120 consensus_11676#1 GAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCC 76 ************************************************************ consensus_11676#0 ATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGC 180 consensus_11676#1 ATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGC 136 ************************************************************ consensus_11676#0 TCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGAT 240 consensus_11676#1 TCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGAT 196 ************************************************************ consensus_11676#0 GTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCG 300 consensus_11676#1 GTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCG 256 ************************************************************ consensus_11676#0 CTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCA-TGAGTTGGG-AG 358 consensus_11676#1 CTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCAATGAGTTGGGGAG 316 *********************************************** ********* ** consensus_11676#0 CGGCTCCAATTTC---ATCC-------GATGTGCCCGTG-CCATCT-GTT--GATGAGCT 404 consensus_11676#1 CGGCTCCAATTTTTCAATCCCGGAATTGGTTGCCCCGTGGCCATCTTGTTTGAATGAGCT 376 ************ **** * * ****** ****** *** ******* consensus_11676#0 T-GTGG-ATCAA-GTCGC--GGATGTTCTT--GATTTCTT-CGGATTAGGATCTGTGATG 456 consensus_11676#1 TTGTGGGATCAAAGTCGGCGGAATGTTCTTTGAATTTCTTTCGGATTAAGGGATCCTGTN 436 * **** ***** **** * ******** ******* ******* * * * consensus_11676#0 TGTTTGGGTGTCACTGCCGGTGCCTACATTCTCACCCTCTTTGCAACAAAATACCGGGAT 516 consensus_11676#1 -GAATGGTNGTT------------------------------------------------ 447 * *** ** consensus_11676#0 AGAGTGATTGGCCTTATGCTAGTTTCGCCGCTATGCAAAGCCCCTTCTTGGAGCGAGTGG 576 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 TTGTACAATAAGGTATTATTAAACTTGCTTTACTATTATGGGAGTCGTGGGCTAGTCAAG 636 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 GAATGCTTGCTTCAGCGGTATTTTAGCACGGAAGTTCGTGGGAATGGACAAGACCCTGAA 696 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 TCAGAGATTGTGCAAGCCTGTAGAAGTTTACTTCATGAGCGACAGGGATCTAATGTATGG 756 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 CGATTCCTTCAGGCGATAAACGAGAGACATGACCTGACGGAAGCGTTGAAGAAGCTTCAG 816 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 TGTCGGACACTGATTTTTGTGGGAGAGAACTCACAGTTCCACGACGACGCAGTCCATATG 876 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 ACCACAAAGCTAGACCGGAGATATTGCGCCCTAGTCGAGGTTCAGGCATGCGGGTCACTC 936 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 GTCACCGAGGAGCAACCGCACGCGATGTTGATCCCCATGGAGTACTTCCTCATGGGATAT 996 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 GGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGT 1056 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 ATATCGCCTGAACTTCTGTCACCGGAGAGCATGGGAGTGAAGCTGAAGCCCATCAAGACT 1116 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 CGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCCTGACAATA 1176 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 CAAGCTCATGAAGGTGGAACACTGCATGGGCTAGTCTGAATTCAGATGGTCACTGCCAGC 1236 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 AAGTTTTGGTACCTCCAGTGATGCAGCTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGT 1296 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 TAACTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGG 1356 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 AGAAGGGTGGGTCTGTTTGTTCATATGTTTGTAGTCAGAAACACATGTATATCTCATCAC 1416 consensus_11676#1 ------------------------------------------------------------ consensus_11676#0 ATCGTTCCATACGAGAAAAAGAAGAGAGAAAATGATAGAAGCAGAAAAAAAAAAA 1471 consensus_11676#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||