These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 722 fasta sequence [CGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGTGCAAACTGAAGCCAACCCACACACCACACACACATATATATACAGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGC-TGTGTTGTTGTGGACCGCGGCGAAATT-AACTAAGTCGTAGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTT-ATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACATGTGATTGTGTATGTGTG] [+] EMBL CF277562 [CGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGTGCAAACTGAAGCCAACCCACACACCACACACACATATATATACAGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGC TGTGTTGTTGTGGACCGCGGCGAAATT AACTAAGTCGTGGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTT ATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCAT ] [+] EMBL CF281754 [CGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGTGCAAACTGAAGCCAACCCACACACCACACACACATATATATACGGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGC TGTGTTGTTGTGGACCGCGGCGAAATT AACTAAGTCGTAGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAG ] [+] EMBL CF277719 [CGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGTGCAAACTGAAGCCAACCCACACACCACACACACATATATATACAGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGATGGATATTTTCTGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGC TGTGTTGTTGTGGACCGCGGCGAAATT AACTAAGTCGTGGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATAC ] [+] EMBL OSS15617A [ GAATCTNATGCCCTAGTGCAAGTNTGCAAACTGAAGCCAACCCACACACCACACACACATATATATACAGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGNCACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGTTTGCTTGTG ] [+] EMBL AK062489 [ TTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGC TGTGTTGTTGTGGACCGCGGCGAAATT AACTAAGTCGTAGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTT ATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACATGTGATTGTGTATGTGTG] [-] EMBL CF281753 [ AACTAAAGCCTGCAGCCATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGC TGTGTTGTTGTGGACCGCGGCGAAATT AACTAAGTCGTAGTACAAAATGAGACACACATCCTAGTTTTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTT ATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTAaaaaaaaa ] [+] EMBL AU101826 [ gcgnatAATTTCAACTAAGTCGTAGTACAAAATGAGACACNCATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTTNATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTAAAAAAAAAAa ] consensusID : consensus_11677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [ATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATTTGATGGAGAAGTCCAGACGAGCAAATTTTTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGCCAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGCTGTGTTGTTGTGGACCGCGGCGAAATTAATTAAGTCGTGGTACAAAATGAGACACACATCCTAGTTTTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTTATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTTTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACAAAAAAAAAAAAAA] [-] EMBL CF277561 [ATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATTTGATGGAGAAGTCCAGACGAGCAAATTTTTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGCCAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGCTGTGTTGTTGTGGACCGCGGCGAAATTAATTAAGTCGTGGTACAAAATGAGACACACATCCTAGTTTTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTTATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTTTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACAAAAAAAAAAAAAA] [-] EMBL CF277718 [ TCAAACCGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGCTGTGTTGTTGTGGACCGCGGCGAAATTAATTAAGTCGTGGTACAAAATGAGACACACATCCTAGTTTTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATCCCATATTATATACTAAGTTGTTATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTTTCATGTGTGTTAAGTTACCCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTCCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11677#0 CGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGTGCAAACTGAAGCCAACCCACAC 60 consensus_11677#1 ------------------------------------------------------------ consensus_11677#0 ACCACACACACATATATATACAGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGC 120 consensus_11677#1 ---------------------------------ATTTTTCTTTTGAAAGCTGCAGGGTGC 27 *************************** consensus_11677#0 TCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGC 180 consensus_11677#1 TCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGC 87 ************************************************************ consensus_11677#0 CATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGA 240 consensus_11677#1 CATGGATTTGATGGAGAAGTCCAGACGAGCAAATTTTTTGTTCGACGACAACGACGGAGA 147 ******* **************************** *********************** consensus_11677#0 TGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAA 300 consensus_11677#1 TGAGGATCAAAACGCCAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAA 207 ************** ********************************************* consensus_11677#0 GAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTC 360 consensus_11677#1 GAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTC 267 ************************************************************ consensus_11677#0 CTCCGGGTTGCTGGCAAGCTTGCTGTGTTGTTGTGGACCGCGGCGAAATTAACTAAGTCG 420 consensus_11677#1 CTCCGGGTTGCTGGCAAGCTTGCTGTGTTGTTGTGGACCGCGGCGAAATTAATTAAGTCG 327 **************************************************** ******* consensus_11677#0 TAGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGAT 480 consensus_11677#1 TGGTACAAAATGAGACACACATCCTAGTTTTACGATTCGGGATTTGAGGTATGCTTAGAT 387 * *************************** ****************************** consensus_11677#0 TTACAGTAGTAGGATATACCATATTATATACTAAGTTGTTATGTTTTAGGATGTCGGATT 540 consensus_11677#1 TTACAGTAGTAGGATATACCATATTATATACTAAGTTGTTATGTTTTAGGATGTCGGATT 447 ************************************************************ consensus_11677#0 TTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTA 600 consensus_11677#1 TTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTA 507 ************************************************************ consensus_11677#0 CCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGA 660 consensus_11677#1 CCAATTACTTTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGA 567 ********* ************************************************** consensus_11677#0 ATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACATGTGATTGTGTATGTG 720 consensus_11677#1 ATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACAAAAAAAAAAAAAA--- 624 ******************************************** * * consensus_11677#0 TG 722 consensus_11677#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||