cluster # 11682

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Oryza sativa
cluster # 11682 cluster # 11682 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11682#0 length = 738 sequences # 6

consensus_11682#1 length = 435 sequences # 1
consensus_11682#2 length = 354 sequences # 2

consensusID : consensus_11682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 738
fasta sequence

                              [ATTAAACCAACCCGAGCACCGTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGCTCTGCGG-CTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAATTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATGAGGAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGAT-CA-GGGTGA-CGA-GGAGGCA-GCTCCAGGAGCTGCTGGA-GAA-GGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTG-CT-GGCAGAGATGATCAGCTCCGG-CAAGGTTTGCTACGAGCAGGAGGCAGCGGGCT-GGCGGCCGTCGCTGCAAAGCA-TACCGG-AGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTTGAGCAGATTTCTGATAAAAATCTGTCCCTGAACTTTGTACTCATATGGCCTCAGATGTCTCGATGATCACTGATGAACTGCAGAGAGACGATGAACTTCACAGCTAGTAATGAAA]

[+] EMBL AK062811             [ATTAAACCAACCCGAGCACCGTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGCTCTGCGG CTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAATTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATGAGGAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGAT CA GGGTGA CGA GGAGGCA GCTCCAGGAGCTGCTGGA GAA GGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTG CT GGCAGAGATGATCAGCTCCGG CAAGGTTTGCTACGAGCAGGAGGCAGCGGGCT GGCGGCCGTCGCTGCAAAGCA TACCGG AGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTTGAGCAGATTTCTGATATAGCTCTGTCCCTGAACTTTGTACTCATATGGCCTCAGATGTCTCGATGATCACTGATGAACTGCAGAGAGACGATGAACTTCACAGCTAGTAATGAAA]
[+] EMBL AU164862             [          CCCGAGCACCGTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGCTCTGCGGACTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAATTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATGAGGAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGAT CA GGGTGA CGA GGAGGCA GCTCCAGGAGCTGCTGGA GAA GGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTG CT GGCAGAGATGATCAGCTCCGGNCAAGGTTTGCTACGAGCAGGAGGCAGCGGGCT GGCGGCCGTCGCTGCAAAGCATTACCGGNAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTTGAGCAGATTTCTGATAAAAA                                                                                               ]
[+] EMBL AU101558             [          CCCGAGCACCGTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGCTCTGCGGACTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAATTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATGAGGAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGAT CA GGGTGA CGA GGAGGCA GCTCCAGGAGCTGCTGGA GAA GGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTG CTGGGCAGAGATGATCAGCTCCGG CAAGGTTTGCTACGAGCAGGAGGCAGCGGGCTGGGCGGCCGTCGCTGCAAAGCATTACCGG ANGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTG                                                                                                                                                                                                                                                            ]
[+] EMBL AU184024             [                    GTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGCTCTGCGG CTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAATTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATGAGGAGG         AGCAGCAGCATCTACATGAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGAT CA GGGTGA CGA GGAGGCA GCTCCAGGAGCTGCTGGA GAA GGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTG CT GGCAGAGATGATCAGCTCCGG CAAGGTTTGCTACGAGCAGGAGGCAGCGGGCT GGCGGCCGTCGCTGCAAAGCA TACCGG AGGCCGAC                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU101559             [                                                                                                                                                                                                         GAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGATCCA GGGTGA CGA GGAGGCA GCTCCAGGAGCTGCTGGA GAA GGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTG CT GGCAGAGATGATCAGCTCCGG CAAGGTTTGCTACGAGCAGGAGGCAGCGGGCT GGCGGCCGTCGCTGCAAAGCA TACCGG AGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTTGAGCAGATTTCTGATAAAAA                                                                                               ]
[+] EMBL BI806943             [                                                                                                                                                                                                                                                                               AGAT CATGGGTGATCGATGGAGGCATGCTCCAGGAGCTGCTGGATGAATGGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGTCT GGCAGAGATGATCAGCTCCGG CAAGGTTTGCTACGAGCAGGAGGCAGCGGGCT GGCGGCCGTCGCTGCAAAGCA TACCGG AGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTAaaaa                                                                                                                  ]




>consensus_11682#0
ATTAAACCAACCCGAGCACCGTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGC
TCTGCGGCTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAA
TTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACG
ACGGCGAGTGGGAGGATGAGGAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGG
CGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGATCAGGGTGACGAGGAGGCAGCTCCAGG
AGCTGCTGGAGAAGGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAG
AGATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCAGCGGGCTGGCGGCCGTCGC
TGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATA
GGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAG
ATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGA
GATTGCTGGAACTTTTTTTACTTGAGCAGATTTCTGATAAAAATCTGTCCCTGAACTTTG
TACTCATATGGCCTCAGATGTCTCGATGATCACTGATGAACTGCAGAGAGACGATGAACT
TCACAGCTAGTAATGAAA

consensusID : consensus_11682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [CTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATNAGGAGGAGCAGCAGCATCTACATNAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGATCAGGGTGACGAGGAGGCAGCTCCAGGAGCTGCTGGAGAAGGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCANANATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCAGCGGGCTGGCGGCCGTCGCTGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCNTTCCAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU184025             [CTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATNAGGAGGAGCAGCAGCATCTACATNAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGATCAGGGTGACGAGGAGGCAGCTCCAGGAGCTGCTGGAGAAGGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCANANATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCAGCGGGCTGGCGGCCGTCGCTGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCNTTCCAAAAAAAAAAAAAAAAAAA]




>consensus_11682#1
CTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATNA
GGAGGAGCAGCAGCATCTACATNAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGT
GAAGATCAGGGTGACGAGGAGGCAGCTCCAGGAGCTGCTGGAGAAGGCCGCCGGCGAGGG
CAAGGGGCGGCCGGTCGAGAAGGTGCTGGCANANATGATCAGCTCCGGCAAGGTTTGCTA
CGAGCAGGAGGCAGCGGGCTGGCGGCCGTCGCTGCAAAGCATACCGGAGGCCGACGAGTC
ATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTC
TCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCNTTCCAAAA
AAAAAAAAAAAAAAA

consensusID : consensus_11682#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 354
fasta sequence

                              [CGTGCCGAATTCGGCACGAGCAGCTCCAGGAGCTGCTGGAGAAGGCCCCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAGAGATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCGGCGGGCTGGCGGCCGTCGCTGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCTGGAGATGTACAGGCTACTAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTT]

[+] EMBL BE230003             [CGTGCCGAATTCGGCACGAGCAGCTCCAGGAGCTGCTGGAGAAGGCCCCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAGAGATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCGGCGGGCTGGCGGCCGTCGCTGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCTGGAGATGTACAGGCTACTAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTT]
[+] EMBL BE230413             [CGTGCCGAATTCGGCACGAGCAGCTCCAGGAGCTGCTGGAGAATGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAGAGATGATCAGCTCCGGCAAGGTTTGCTACAAGCAGGAGGCGGCGGGCTGGCGGACGTCGCTGCAAGACATGCCGGAGGCCGACGAGTCATAGATTATTCAGCGGATCTTTTGATTCCATACGACTGTTTTATGTTCCTTGATTGA                                                                                                                       ]




>consensus_11682#2
CGTGCCGAATTCGGCACGAGCAGCTCCAGGAGCTGCTGGAGAAGGCCCCCGGCGAGGGCA
AGGGGCGGCCGGTCGAGAAGGTGCTGGCAGAGATGATCAGCTCCGGCAAGGTTTGCTACG
AGCAGGAGGCGGCGGGCTGGCGGCCGTCGCTGCAAAGCATACCGGAGGCCGACGAGTCAT
AGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTC
CACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCTGG
AGATGTACAGGCTACTAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11682#0      ATTAAACCAACCCGAGCACCGTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGC 60
consensus_11682#1      ------------------------------------------------------------
consensus_11682#2      ------------------------------------------------------------
                                                                                   

consensus_11682#0      TCTGCGGCTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAA 120
consensus_11682#1      ------------------------------------------------------------
consensus_11682#2      ------------------------------------------------------------
                                                                                   

consensus_11682#0      TTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACG 180
consensus_11682#1      -------------------CTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACG 41
consensus_11682#2      ------------------------------------------------------------
                                                                                   

consensus_11682#0      ACGGCGAGTGGGAGGATGAGGAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGG 240
consensus_11682#1      ACGGCGAGTGGGAGGATNAGGAGGAGCAG---------CAGCATCTACATNAGATGGCGG 92
consensus_11682#2      ------------------------------------------------------------
                                                                                   

consensus_11682#0      CGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGATCAGGGTGACGAGGAGGCAGCTCCAGG 300
consensus_11682#1      CGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGATCAGGGTGACGAGGAGGCAGCTCCAGG 152
consensus_11682#2      ------------------------------CGTGCCGAATTCGGCACGAGCAGCTCCAGG 30
                                                      *  * *  *   *     ***********

consensus_11682#0      AGCTGCTGGAGAAGGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAG 360
consensus_11682#1      AGCTGCTGGAGAAGGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAN 212
consensus_11682#2      AGCTGCTGGAGAAGGCCCCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAG 90
                       ***************** ***************************************** 

consensus_11682#0      AGATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCAGCGGGCTGGCGGCCGTCGC 420
consensus_11682#1      ANATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCAGCGGGCTGGCGGCCGTCGC 272
consensus_11682#2      AGATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCGGCGGGCTGGCGGCCGTCGC 150
                       * ************************************** *******************

consensus_11682#0      TGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATA 480
consensus_11682#1      TGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATA 332
consensus_11682#2      TGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATA 210
                       ************************************************************

consensus_11682#0      GGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAG 540
consensus_11682#1      GGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAG 392
consensus_11682#2      GGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAG 270
                       ************************************************************

consensus_11682#0      ATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGA 600
consensus_11682#1      ATATTGTAGTTTGATCGTCNTTCCAAAAAAAAAAAAAAAAAAA----------------- 435
consensus_11682#2      ATATTGTAGTTTGATCGTCATTCTTTCTGGAGATGTACAGGCTACTAGACTGATTGAGAG 330
                       ******************* ***                                     

consensus_11682#0      GATTGCTGGAACTTTTTTTACTTGAGCAGATTTCTGATAAAAATCTGTCCCTGAACTTTG 660
consensus_11682#1      ------------------------------------------------------------
consensus_11682#2      AGATTGCTGGAACTTTTTTTACTT------------------------------------ 354
                                                                                   

consensus_11682#0      TACTCATATGGCCTCAGATGTCTCGATGATCACTGATGAACTGCAGAGAGACGATGAACT 720
consensus_11682#1      ------------------------------------------------------------
consensus_11682#2      ------------------------------------------------------------
                                                                                   

consensus_11682#0      TCACAGCTAGTAATGAAA 738
consensus_11682#1      ------------------
consensus_11682#2      ------------------