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Oryza sativa
cluster # 11685 cluster # 11685       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11685#0 length = 814 sequences # 3  
consensus_11685#1 length = 714 sequences # 4  
consensus_11685#2 length = 602 sequences # 1  
consensus_11685#3 length = 549 sequences # 1  

consensusID : consensus_11685#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 814
fasta sequence
                              [GCGATTCCCCCACTCTCCTTCTCGCGGAGCAATTAAAGGACACAACGCGTCGCGAGGTCGCGCCGCCGCGAAACCCCACTTCTTCTTCGCCGCCGGCCGCCTCGCCTCGCCTCTTCCTCCCCGCAGCATCATCCTCTCTCCCCCGGTTCCCCGGCGGCGGCGGCGAGCGGCCTCGCAGCTTCGCCAAGTCCCCACTCCCTCCATCCCCAGGTTAGCATTTGACAGCCATGGCAAAGCATCATCCTGATCTCATCATGTGCAGGAAGCAGCCTGGCATTGCGATTGGTCGTTTATGTGAGAAATGTGATGGCAAGTGTGTCATCTGTGACTCCTACGTGCGCCCGTGTACGCTTGTTCGGGTCTGTGATGAGTGCAACTAT-GGATCCTTCCAGGGAAGGTGTGTTATCTGTGGAGGGGTTGGC-ATCTCAGATGC-TTACTACTGCAAGGAGTGCACTCAGC-AAG-AAAAGGACCGAGATGGATGTCCTAAGATTGTCAACCTTGGAAGCGCCAAGACCGATCTCTTCTATGAGCGCAAGAAATATGGTTTTAAGAAGAGATGATCAGGAAGGTGGATTTGTCTGGTCCTTCTGGTCTCGCTGTGATTTTTGTTGCACGGATATAACTGCTAAGTCAACAGCTTTGTATTCATGGTCTGCTTTGATACTAATATGAGATAGCATCGCTGATGTTTGCTGTAATGTTACTTGTATGAAATGGTCTACATTCTCGAGTCTGCATTTGCACTTATGCAGTAGGTACCTGATGTTAATGACTATGATTGTTGACATGAAATGCGAACTGAGATATGGAGTAC]

[+] EMBL AK103509             [GCGATTCCCCCACTCTCCTTCTCGCGGAGCAATTAAAGGACACAACGCGTCGCGAGGTCGCGCCGCCGCGAAACCCCACTTCTTCTTCGCCGCCGGCCGCCTCGCCTCGCCTCTTCCTCCCCGCAGCATCATCCTCTCTCCCCCGGTTCCCCGGCGGCGGCGGCGAGCGGCCTCGCAGCTTCGCCAAGTCCCCACTCCCTCCATCCCCAGGTTAGCATTTGACAGCCATGGCAAAGCATCATCCTGATCTCATCATGTGCAGGAAGCAGCCTGGCATTGCGATTGGTCGTTTATGTGAGAAATGTGATGGCAAGTGTGTCATCTGTGACTCCTACGTGCGCCCGTGTACGCTTGTTCGGGTCTGTGATGAGTGCAACTAT GGATCCTTCCAGGGAAGGTGTGTTATCTGTGGAGGGGTTGGC ATCTCAGATGC TTACTACTGCAAGGAGTGCACTCAGC AAG AAAAGGACCGAGATGGATGTCCTAAGATTGTCAACCTTGGAAGCGCCAAGACCGATCTCTTCTATGAGCGCAAGAAATATGGTTTTAAGAAGAGATGATCAGGAAGGTGGATTTGTCTGGTCCTTCTGGTCTCGCTGTGATTTTTGTTGCACGGATATAACTGCTAAGTCAACAGCTTTGTATTCATGGTCTGCTTTGATACTAATATGAGATAGCATCGCTGATGTTTGCTGTAATGTTACTTGTATGAAATGGTCTACATTCTCGAGTCTGCATTTGCACTTATGCAGTAGGTACCTGATGTTAATGACTATGATTGTTGACATGAAATGCGAACTGAGATATGGAGTAC]
[+] EMBL OSC1591              [                                                                                     TTCGCCGCCGGCCGCCTCGCCTCGCCTCTTCCTCCCCGCAGCATCATCCTCTCTCCCCCGGTTCCCCGGCGGCGGCGGCGAGCGGCCTCGCAGCTTCGCCAAGTCCCCACTCCCTCCATCCCCAGGTTAGCATTTGACAGCCATGGCAAAGCATCATCCTGATCTCATCATGTGCAGGAAGCAGCCTGGCATTGCGATTGGTCGTTTATGTGAGAAATGTGATGGCAAGTGTGTCATCTGTGACTCCTACGTGCGCCCGTGTACGCTTGTTCGGGTCTGTGATGAGTGCAACTATGGGATCCTTNCAGGGAAGGTGTGTTATCTGTGGAGGGGTTTGCAATCTCAGATGCTTTACTACTTCAAGGAGTGCACTCAGCAAAGAAAAAGGACCCAGATNGATGTCCTAAGgat                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU101354             [                                                                                      TCNCCNCCGGCCGCCTCGCCTCGCCTCTTCCTCCCCGCAGCATCATCCTCTCTCCNCCGGTTCCCCGNCGGCGGCGGCGAGCGGCCTCGCAGCTTCGCCAAGTCCCCACTCCCTCCATCCCCAGGTTAGCATTTGACAGCCATGGCAAAGCATCATCCTGATCTCATCATGTGCAGGAAGCAGCCTGGCATTGCGATTGGTCGTTTATGTGAGAAATGTGATGGCAAGTGTGTCATCTGTGACTCCTACGTGCGCCCGTGTACGCTTGTTCGGGTCTGTGATGAGTGCAACTAT GGATCCTTCCAGGGAAGGTGTGTTATCTGTGGAGGGGTTGGC ATCTCAGATGC TTACTACTGCAAGGAGTGCACTCAGC AAG AAAAGGACCGAGATGGATGTCCTAAGATTGTCAACCTTGGAAGCGCCAAGACCGATCTCTTCTATGAGCGCAAGAAATATGGTTTTAAGAAGAGATGATCAGGAAGGTGGATTTGTCTGGTCCTTCTGGTCTCGCTGTGATTTTTGTTGCACGGATATAACTGCTAAGTCAACAGCTTTGTATTCATGGTCTGCTTTGATACTAATATGAGATAGCATCGCTGATGTTTGCTGTAAaaa                                                                                                                 ]


>consensus_11685#0 GCGATTCCCCCACTCTCCTTCTCGCGGAGCAATTAAAGGACACAACGCGTCGCGAGGTCG CGCCGCCGCGAAACCCCACTTCTTCTTCGCCGCCGGCCGCCTCGCCTCGCCTCTTCCTCC CCGCAGCATCATCCTCTCTCCCCCGGTTCCCCGGCGGCGGCGGCGAGCGGCCTCGCAGCT TCGCCAAGTCCCCACTCCCTCCATCCCCAGGTTAGCATTTGACAGCCATGGCAAAGCATC ATCCTGATCTCATCATGTGCAGGAAGCAGCCTGGCATTGCGATTGGTCGTTTATGTGAGA AATGTGATGGCAAGTGTGTCATCTGTGACTCCTACGTGCGCCCGTGTACGCTTGTTCGGG TCTGTGATGAGTGCAACTATGGATCCTTCCAGGGAAGGTGTGTTATCTGTGGAGGGGTTG GCATCTCAGATGCTTACTACTGCAAGGAGTGCACTCAGCAAGAAAAGGACCGAGATGGAT GTCCTAAGATTGTCAACCTTGGAAGCGCCAAGACCGATCTCTTCTATGAGCGCAAGAAAT ATGGTTTTAAGAAGAGATGATCAGGAAGGTGGATTTGTCTGGTCCTTCTGGTCTCGCTGT GATTTTTGTTGCACGGATATAACTGCTAAGTCAACAGCTTTGTATTCATGGTCTGCTTTG ATACTAATATGAGATAGCATCGCTGATGTTTGCTGTAATGTTACTTGTATGAAATGGTCT ACATTCTCGAGTCTGCATTTGCACTTATGCAGTAGGTACCTGATGTTAATGACTATGATT GTTGACATGAAATGCGAACTGAGATATGGAGTAC



consensusID : consensus_11685#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 714
fasta sequence
                              [CGTCTCCGCCGCCGCCGGAATCGGGCCTCGCCATCGGAGTGGCGGCGAGGAGTTGAAGGCCACCGACCGCCGGCTTCGACCACGCCGCCTCGTCCTCGTCGGATCCGCGACCAGAACGCCGCCACCTCGTCGTCGGTTCCTTCGCGCAGATCGCCGCCGCGTCTCATACTCTTCGGTTAGCATTCGACAGCCATGGCAAAGCATCATCCTGATCTCATCATGTGCAGGAAGCAGCCTGGCATTGCTATTGGTCGTTTGTGCGAGAAATGTGATGGCAAGTGTGTCATCTGTGACTCGTATGTGCGCCCATGTACGCTTGTCCGAGTCTGTGATGAGTGCAACTATGGTTCCTTCCAGGGGAGGTGTGTCATCTGTGGGGGGGTCGGCATCTCAGATGCCTACTACTGCAAGGAGTGCACTCAGCAGGAAAAGGACCGAGATGGATGTCCCAAGATTGTCAATCTTGGAAGCGCCAAGACCGATCTCTTCTATGAACGAAAGAAGTATGGTTTTAAGAAGAGATGATCAGGAAGTTGGATTTGTCTGGTCCATTTCCTCGCCGTGTTTTCAGTCGCACTGATATGGTTGTTAAGGACTTAAGGCGGACATCTTTGTATTCTATGGAATATGGTCTAGATTCTTAAAAAAGCATGTGCAGTACGTACCTGATGTTAATGACCATGATTGTTGACATGAGATGTGAACCGAGATACT]

[+] EMBL CF292020             [CGTCTCCGCCGCCGCCGGAATCGGGCCTCGCCATCGGAGTGGCGGCGAGGAGTTGAAGGCCACCGACCGCCGGCTTCGACCACGCCGCCTCGTCCTCGTCGGATCCGCGACCAGAACGCCGCCACCTCGTCGTCGGTTCCTTCGCGCAGATCGCCGCCGCGTCTCATACTCTTCGGTTAGCATTCGACAGCCATGGCAAAGCATCATCCTGATCTCATCATGTGCAGGAAGCAGCCTGGCATTGCTATTGGTCGTTTGTGCGAGAAATGTGATGGCAAGTGTGTCATCTGTGACTCGTATGTGCGCCCATGTACGCTTGTCCGAGTCTGTGATGAGTGCAACTATGGTTCCTTCCAGGGGAGGTGTGT ATCTGGGGGGGGGGCGGGATCTCAGATGCCTACTACTGCAAGGAGTGCACTCAGCAGGAAAAGGACCGAGATGGATGTCCCAAGATTGTCAATCTTGGAAGCGCCAAGACCGATCTCTTCTATGAACGAAAGAAGTATGGTTTTAAGAAGAGATGATCAGGAAGTTGGATTTGTCTGGTCCATTTCCTCGCCGTGTTTTCAGTCGCACTGATATGGTTGTTAAGGACTTAAGGCGGACATCTTTGTATTCTATGGAATATGGTCTAGATTCTTAAAAA                                                                   ]
[-] EMBL CF292021             [                 GAATCGGGCCTCGCCATCGGAGTGGCGGCGAGGAGTTGAAGGCCACCGACCGCCGGCTTCGACCACGCCGCCTCGTCCTCGTCGGATCCGCGACCAGAACGCCGCCACCTCGTCGTCGGTTCCTTCGCGCAGATCGCCGCCGCGTCTCATACTCTTCGGTTAGCATTCGACAGCCATGGCAAAGCATCATCCTGATCTCATCATGTGCAGGAAGCAGCCTGGCATTGCTATTGGTCGTTTGTGCGAGAAATGTGATGGCAAGTGTGTCATCTGTGACTCGTATGTGCGCCCATGTACGCTTGTCCGAGTCTGTGATGAGTGCAACTATGGTTCCTTCCAGGGGAGGTGTGTCATCTGTGGGGGGGTCGGCATCTCAGATGCCTACTACTGCAAGGAGTGCACTCAGCAGGAAAAGGACCGAGATGGATGTCCCAAGATTGTCAATCTTGGAAGCGCCAAGACCGATCTCTTCTATGAACGAAAGAAGTATGGTTTTAAGAAGAGATGATCAGGAAGTTGGATTTGTCTGGTCCATTTCCTCGCCGTGTTTTCAGTCGCACTGATATGGTTGTTAAGGACTTAAGGCGGACATCTTTGTATTCTATGGAATATGGTCTAGATTCTTAAAAAA                                                                  ]
[+] EMBL AU225314             [                      gccgCTCGCCATCGGAGTGGCGGCGAGGAGTTGAAGGCCACCGACCGCCGGCTTCGACCACGCCGCCTCGTCCTCGTCGGATCCGCGACCAGAACGCCGCCACCTCGTCGTCGGTTCCTTCGCGCAGATCGCCGCCGCGTCTCATACTCTTCGGTTAGCATTCGACAGCCATGGCAAAGCATCATCCTGATCTCATCATGTGCAGGAAGCAGCCTGGCATTGCTATTGGTCGTTTGTGCGAGAAATGTGATGGCAAGTGTGTCATCTGTGACTCGTATGTGCGCCCATGTACGCTTGTCCGAGTCTGTGATGAGTGCAACTATGGTTCCTTCCAGGGGAGGTGTGTCATCTGTGGGGGGGTCGGCATCTCAGATGCCTACTACTGCAAGGAGTGCACTCAGCAGGAAAAGGACCGAGATGGATGTCCCAAGATTGTCAATCTTGGAAGCGCCAAGACCGATCTCTTCTATGAACGAAAGA                                                                                                                                                                                                                    ]
[-] EMBL BE607432             [                                                                                                                                                                                                                                                            CGTTTGTGCGAGAAATGTGATGGCAAGTGTGTCATCTGTGACTCGTATGTGCGCCCATGTACGCTTGTCCGAGTCTGTGATGAGTGCAACTATGGTTCCTTCCAGGGGAGGTGTGTCATCTGTGGGGGGGTCGGCATCTCAGATGCCTACTACTGCAAGGAGTGCACTCAGCAGGAAAAGGACCGAGATGGATGTCCCAAGATTGTCAATCTTGGAAGCGCCAAGACCGATCTCTTCTATGAACGAAAGAAGTATGGTTTTAAGAAGAGATGATCAGGAAGTTGGATTTGTCTGGTCCATTTCCTCGCTGTGTTTTCAGTCGCACTGATATGGTTGTTAAGGACTTAAGGCGGACATCTTTGTATTCTATGGAATATGGTCTAGATTCTTAAGGCTGCATGTGCAGTACGTACCTGATGTTAATGACCATGATTGTTGACATGAGATGTGAACCGAGATACT]


>consensus_11685#1 CGTCTCCGCCGCCGCCGGAATCGGGCCTCGCCATCGGAGTGGCGGCGAGGAGTTGAAGGC CACCGACCGCCGGCTTCGACCACGCCGCCTCGTCCTCGTCGGATCCGCGACCAGAACGCC GCCACCTCGTCGTCGGTTCCTTCGCGCAGATCGCCGCCGCGTCTCATACTCTTCGGTTAG CATTCGACAGCCATGGCAAAGCATCATCCTGATCTCATCATGTGCAGGAAGCAGCCTGGC ATTGCTATTGGTCGTTTGTGCGAGAAATGTGATGGCAAGTGTGTCATCTGTGACTCGTAT GTGCGCCCATGTACGCTTGTCCGAGTCTGTGATGAGTGCAACTATGGTTCCTTCCAGGGG AGGTGTGTCATCTGTGGGGGGGTCGGCATCTCAGATGCCTACTACTGCAAGGAGTGCACT CAGCAGGAAAAGGACCGAGATGGATGTCCCAAGATTGTCAATCTTGGAAGCGCCAAGACC GATCTCTTCTATGAACGAAAGAAGTATGGTTTTAAGAAGAGATGATCAGGAAGTTGGATT TGTCTGGTCCATTTCCTCGCCGTGTTTTCAGTCGCACTGATATGGTTGTTAAGGACTTAA GGCGGACATCTTTGTATTCTATGGAATATGGTCTAGATTCTTAAAAAAGCATGTGCAGTA CGTACCTGATGTTAATGACCATGATTGTTGACATGAGATGTGAACCGAGATACT



consensusID : consensus_11685#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence
                              [CCCCGCGACTGGTCTATCTCTCGGTAGCATCGACAGCCATGCAAAGCATCATCCTGATCTCATCATGTCAGAAAGCAGCCTGCATGCTATTGGTCGTNTGTCAAGAATGTATGGCAAGTGGTCATCTGTACTCGTATGTCGCCCATGTACGCTTGTCCGAGTCTGTATGAGTGCAACTATGGTTCCTTCCAGAGNNAGGTGTGTCATCTGTGNNGNGGTCGGCATCTCAGAATGCCTACTACTGCAANGAGTGCACTCAGCAGGAAAGGACCGAGATGGATGTCNCCAGATTGTCAATCTTGGAAGCGCCAAGACCGATCTCTTCTATGAACGANAGAAGTATGGTTATAAGAAGAGATGATCAGGAAGTTGGATGTGTCTGGTCCATTTCCTCGCTGTGTTATCAGTCGCACTGATATGGTTGTTAAGGACTTAAGGCGGACATCTGTGTATTCTATGGAATATGGTCTAGATTCTTAAGGCTGCATGTGCAGTACGTACCTATGTTAATGACCATGATTGNTACATGAGATGTANCCGAGATACTNNTAGTCNTAANAAACCNTCAGCCGGGGATCCACTAGTATAGACGACCGCACGCG]

[-] EMBL BE040251             [CCCCGCGACTGGTCTATCTCTCGGTAGCATCGACAGCCATGCAAAGCATCATCCTGATCTCATCATGTCAGAAAGCAGCCTGCATGCTATTGGTCGTNTGTCAAGAATGTATGGCAAGTGGTCATCTGTACTCGTATGTCGCCCATGTACGCTTGTCCGAGTCTGTATGAGTGCAACTATGGTTCCTTCCAGAGNNAGGTGTGTCATCTGTGNNGNGGTCGGCATCTCAGAATGCCTACTACTGCAANGAGTGCACTCAGCAGGAAAGGACCGAGATGGATGTCNCCAGATTGTCAATCTTGGAAGCGCCAAGACCGATCTCTTCTATGAACGANAGAAGTATGGTTATAAGAAGAGATGATCAGGAAGTTGGATGTGTCTGGTCCATTTCCTCGCTGTGTTATCAGTCGCACTGATATGGTTGTTAAGGACTTAAGGCGGACATCTGTGTATTCTATGGAATATGGTCTAGATTCTTAAGGCTGCATGTGCAGTACGTACCTATGTTAATGACCATGATTGNTACATGAGATGTANCCGAGATACTNNTAGTCNTAANAAACCNTCAGCCGGGGATCCACTAGTATAGACGACCGCACGCG]


>consensus_11685#2 CCCCGCGACTGGTCTATCTCTCGGTAGCATCGACAGCCATGCAAAGCATCATCCTGATCT CATCATGTCAGAAAGCAGCCTGCATGCTATTGGTCGTNTGTCAAGAATGTATGGCAAGTG GTCATCTGTACTCGTATGTCGCCCATGTACGCTTGTCCGAGTCTGTATGAGTGCAACTAT GGTTCCTTCCAGAGNNAGGTGTGTCATCTGTGNNGNGGTCGGCATCTCAGAATGCCTACT ACTGCAANGAGTGCACTCAGCAGGAAAGGACCGAGATGGATGTCNCCAGATTGTCAATCT TGGAAGCGCCAAGACCGATCTCTTCTATGAACGANAGAAGTATGGTTATAAGAAGAGATG ATCAGGAAGTTGGATGTGTCTGGTCCATTTCCTCGCTGTGTTATCAGTCGCACTGATATG GTTGTTAAGGACTTAAGGCGGACATCTGTGTATTCTATGGAATATGGTCTAGATTCTTAA GGCTGCATGTGCAGTACGTACCTATGTTAATGACCATGATTGNTACATGAGATGTANCCG AGATACTNNTAGTCNTAANAAACCNTCAGCCGGGGATCCACTAGTATAGACGACCGCACG CG



consensusID : consensus_11685#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence
                              [GATCTCATCATTGTGCTGGAAGCATCCTGGCATTGCTATTGGTCGTTTGTGCGAGAAATGTGATGTCAAGTGTGTCATCTGTGACTCGTATGTGCGCCCATGTACGCTTGTCCGAGTTCTGTGATGAGTTTCAATCTATGGTTCCTTTCCAGGGGATGGTGTGTCATCTTGTGGGTGGGGTCGCGCATCTCCAGATGCCTACTACTGCAAGTGAGTGCATCTCAGCCAGGAAAAGGCTCCGAGACTGGATGTCCCAAGATTGCTCAATTCTTGGAAGCGCCAACGACCCGATCTCTTTCTGATGAACCGAAAGATAGTAGTGGTTTTAAAGAAGAAGATGATCACGGAAGTGTGGATTGTGTCTGGGTCCATTTCCTCGCCTGTGTTTTGCAGTCGCGACTGAGATGGTTGCTTAAGGACTTAAGGCGCNGACATACTTTGTATTCTAGTGGAATAGTGGTTCTAGATTTCTTAAGGCTGCCATGTGCCAGTACGTACCGTGATGTTAATGACCCATGATTGTTGACATGAGATGTGAACCGAGATACT]

[-] EMBL CB965365             [GATCTCATCATTGTGCTGGAAGCATCCTGGCATTGCTATTGGTCGTTTGTGCGAGAAATGTGATGTCAAGTGTGTCATCTGTGACTCGTATGTGCGCCCATGTACGCTTGTCCGAGTTCTGTGATGAGTTTCAATCTATGGTTCCTTTCCAGGGGATGGTGTGTCATCTTGTGGGTGGGGTCGCGCATCTCCAGATGCCTACTACTGCAAGTGAGTGCATCTCAGCCAGGAAAAGGCTCCGAGACTGGATGTCCCAAGATTGCTCAATTCTTGGAAGCGCCAACGACCCGATCTCTTTCTGATGAACCGAAAGATAGTAGTGGTTTTAAAGAAGAAGATGATCACGGAAGTGTGGATTGTGTCTGGGTCCATTTCCTCGCCTGTGTTTTGCAGTCGCGACTGAGATGGTTGCTTAAGGACTTAAGGCGCNGACATACTTTGTATTCTAGTGGAATAGTGGTTCTAGATTTCTTAAGGCTGCCATGTGCCAGTACGTACCGTGATGTTAATGACCCATGATTGTTGACATGAGATGTGAACCGAGATACT]


>consensus_11685#3 GATCTCATCATTGTGCTGGAAGCATCCTGGCATTGCTATTGGTCGTTTGTGCGAGAAATG TGATGTCAAGTGTGTCATCTGTGACTCGTATGTGCGCCCATGTACGCTTGTCCGAGTTCT GTGATGAGTTTCAATCTATGGTTCCTTTCCAGGGGATGGTGTGTCATCTTGTGGGTGGGG TCGCGCATCTCCAGATGCCTACTACTGCAAGTGAGTGCATCTCAGCCAGGAAAAGGCTCC GAGACTGGATGTCCCAAGATTGCTCAATTCTTGGAAGCGCCAACGACCCGATCTCTTTCT GATGAACCGAAAGATAGTAGTGGTTTTAAAGAAGAAGATGATCACGGAAGTGTGGATTGT GTCTGGGTCCATTTCCTCGCCTGTGTTTTGCAGTCGCGACTGAGATGGTTGCTTAAGGAC TTAAGGCGCNGACATACTTTGTATTCTAGTGGAATAGTGGTTCTAGATTTCTTAAGGCTG CCATGTGCCAGTACGTACCGTGATGTTAATGACCCATGATTGTTGACATGAGATGTGAAC CGAGATACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11685#1      ------------------------------CGTCTCCGCCGCCGCCGGAATCGGGCCTCG 30
consensus_11685#3      ------------------------------------------------------------
consensus_11685#2      ------------------------------------------------------------
consensus_11685#0      GCGATTCCCCCACTCTCCTTCTCGCGGAGCAATTAAAGGACACAACGCGTCGCGAGGTCG 60
                                                                                   

consensus_11685#1      CCATCGGAGTGGCGGCGAGGAGTTGAAGGCCACCGACCGCCGGCTTCGACCACGCCGCCT 90
consensus_11685#3      ------------------------------------------------------------
consensus_11685#2      ------------------------------------------------------------
consensus_11685#0      CGCCGCCGCGAAACCCCACTTCTTCTTCGCCGCCGGCCGCCTCGCCTCGCCTCTTCCTCC 120
                                                                                   

consensus_11685#1      CGTCCTCGTCGGATCCGCGACCAGAACGCCGCCACCTCGTCGTCGGTTCCTTCGCGCAGA 150
consensus_11685#3      ------------------------------------------------------------
consensus_11685#2      ------------------------------------------------------------
consensus_11685#0      CCGCAGCATCATCCTCTCTCCCCCGGTTCCCCGGCGGCGGCGGCGAGCGGCCTCGCAGCT 180
                                                                                   

consensus_11685#1      TCGCC---GCCGCGTCTCATAC-TCTTC-GGTTAGCATTCGACAGCCATGGCAAAGCATC 205
consensus_11685#3      ------------------------------------------------------------
consensus_11685#2      ----C---CCCGCGACTGGTCTATCTCT-CGGTAGCAT-CGACAGCCATG-CAAAGCATC 50
consensus_11685#0      TCGCCAAGTCCCCACTCCCTCCATCCCCAGGTTAGCATTTGACAGCCATGGCAAAGCATC 240
                                                                                   

consensus_11685#1      ATCCTGATCTCATCAT-GTGCAGGAAGCAGCCTGGCATTGCTATTGGTCGTTTGTGCGAG 264
consensus_11685#3      -----GATCTCATCATTGTGCTGGAAGCATCCTGGCATTGCTATTGGTCGTTTGTGCGAG 55
consensus_11685#2      ATCCTGATCTCATCAT-GT-CAGAAAGCAGCCTG-CAT-GCTATTGGTCGTNTGTC--AA 104
consensus_11685#0      ATCCTGATCTCATCAT-GTGCAGGAAGCAGCCTGGCATTGCGATTGGTCGTTTATGTGAG 299
                            *********** ** * * ***** **** *** ** ********* * *   * 

consensus_11685#1      AAATGTGATGGCAAGTGTGTCATCTGTGACTCGTATGTGCGCCCATGTACGCTTGTCCGA 324
consensus_11685#3      AAATGTGATGTCAAGTGTGTCATCTGTGACTCGTATGTGCGCCCATGTACGCTTGTCCGA 115
consensus_11685#2      GAATGT-ATGGCAAGTG-GTCATCTGT-ACTCGTATGT-CGCCCATGTACGCTTGTCCGA 160
consensus_11685#0      AAATGTGATGGCAAGTGTGTCATCTGTGACTCCTACGTGCGCCCGTGTACGCTTGTTCGG 359
                        ***** *** ****** ********* **** ** ** ***** *********** ** 

consensus_11685#1      GT-CTGTGATGAGTGCAA--CTATGGTTCCTT-CCAGGGGA-GGTGTGTCATCT-GTGGG 378
consensus_11685#3      GTTCTGTGATGAGTTTCAATCTATGGTTCCTTTCCAGGGGATGGTGTGTCATCTTGTGGG 175
consensus_11685#2      GT-CTGT-ATGAGTGCAA--CTATGGTTCCTT-CCAGAGNNAGGTGTGTCATCT-GTGNN 214
consensus_11685#0      GT-CTGTGATGAGTGCAA--CTATGGATCCTT-CCAGGGAA-GGTGTGTTATCT-GTGGA 413
                       ** **** ******   *  ****** ***** **** *   ******* **** ***  

consensus_11685#1      -GGGGTCG-GCATCTC-AGATGCCTACTACTGCAAG-GAGTGCA-CTCAGC-AGGAAAAG 432
consensus_11685#3      TGGGGTCGCGCATCTCCAGATGCCTACTACTGCAAGTGAGTGCATCTCAGCCAGGAAAAG 235
consensus_11685#2      -GNGGTCG-GCATCTCAGAATGCCTACTACTGCAAN-GAGTGCA-CTCAGC--AGGAAAG 268
consensus_11685#0      -GGGGTTG-GCATCTC-AGATGCTTACTACTGCAAG-GAGTGCA-CTCAGC-AAGAAAAG 467
                        * *** * *******   **** ***********  ******* ******   * ****

consensus_11685#1      GA-CCGAGA-TGGATGTCCCAAGATTG-TCAAT-CTTGGAAGCGCCAA--GACCGATCTC 486
consensus_11685#3      GCTCCGAGACTGGATGTCCCAAGATTGCTCAATTCTTGGAAGCGCCAACGACCCGATCTC 295
consensus_11685#2      GA-CCGAGA-TGGATGTCNCCAGATTG-TCAAT-CTTGGAAGCGCCAA--GACCGATCTC 322
consensus_11685#0      GA-CCGAGA-TGGATGTCCTAAGATTG-TCAAC-CTTGGAAGCGCCAA--GACCGATCTC 521
                       *  ****** ********   ****** ****  **************    ********

consensus_11685#1      TTCT--ATGAAC-GAAAGA-AGTA-TGGTTTTAAGAAG--AGATGATCA-GGAAGT-TGG 537
consensus_11685#3      TTTCTGATGAACCGAAAGATAGTAGTGGTTTTAAAGAAGAAGATGATCACGGAAGTGTGG 355
consensus_11685#2      TTCT--ATGAAC-GANAGA-AGTA-TGGTTATAAGAAG--AGATGATCA-GGAAGT-TGG 373
consensus_11685#0      TTCT--ATGAGC-GCAAGA-AATA-TGGTTTTAAGAAG--AGATGATCA-GGAAGG-TGG 572
                       **    **** * *  *** * ** ***** ***  *   ********* *****  ***

consensus_11685#1      ATT-TGTCTGG-TCCATTT--CCTCGCC-------GTGTTTT-CAGTCGC-ACTGATA-- 582
consensus_11685#3      ATTGTGTCTGGGTCCATTT--CCTCGCCT------GTGTTTTGCAGTCGCGACTGAGA-- 405
consensus_11685#2      ATG-TGTCTGG-TCCATTT--CCTCGCT-------GTGTTAT-CAGTCGC-ACTGATA-- 418
consensus_11685#0      ATT-TGTCTGG-TCCTTCTGGTCTCGCTGTGATTTTTGTTGCACGGATATAACTGCTAAG 630
                       **  ******* *** * *   *****         ****   * *     ****  *  

consensus_11685#1      ------------------TGGT-TG-TTAAGGACT----TAAGG------CG--GACAT- 609
consensus_11685#3      ------------------TGGT-TGCTTAAGGACT----TAAGG------CGCNGACATA 436
consensus_11685#2      ------------------TGGT-TG-TTAAGGACT----TAAGG------CG--GACAT- 445
consensus_11685#0      TCAACAGCTTTGTATTCATGGTCTGCTTTGATACTAATATGAGATAGCATCGCTGATGTT 690
                                         **** ** **    ***    * **       **  **  * 

consensus_11685#1      CTTTGTATT-CTA-TGGAATA---TGGT-CTAGATTCTTAAAAA--AGCATGTGC----- 656
consensus_11685#3      CTTTGTATT-CTAGTGGAATAG--TGGTTCTAGATTTCTTAAGGCTGCCATGTGCC---- 489
consensus_11685#2      CTGTGTATT-CTA-TGGAATA---TGGT-CTAGATTCTTAAGGC--TGCATGTGC----- 492
consensus_11685#0      TGCTGTAATGTTACTTGTATGAAATGGT-CTACATTCTCGAGTCTGCATTTGCACTTATG 749
                          **** *  ** * * **    **** *** ***    *         **  *     

consensus_11685#1      -AGTACGTACC-TGATGTTAATGACC-ATGATTGTTGACATGAGATGTGAACCGAGATAC 713
consensus_11685#3      -AGTACGTACCGTGATGTTAATGACCCATGATTGTTGACATGAGATGTGAACCGAGATAC 548
consensus_11685#2      -AGTACGTACC--TATGTTAATGACC-ATGATTGNT-ACATGAGATGT-ANCCGAGATAC 546
consensus_11685#0      CAGTAGGTACC-TGATGTTAATGACT-ATGATTGTTGACATGAAATGCGAACTGAGATAT 807
                        **** *****   ***********  ******* * ****** ***  * * ****** 

consensus_11685#1      T------------------------------------------------------- 714
consensus_11685#3      T------------------------------------------------------- 549
consensus_11685#2      TNNTAGTCNTAANAAACCNTCAGCCGGGGATCCACTAGTATAGACGACCGCACGCG 602
consensus_11685#0      GGAGTAC------------------------------------------------- 814
                                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)