cluster # 1169

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Oryza sativa
cluster # 1169 cluster # 1169 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1169#0 length = 356 sequences # 1

consensus_1169#1 length = 311 sequences # 1

consensusID : consensus_1169#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [CTCTCGCCTTTCCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAGCAGAGAAGGAGCAACGCNTGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCTTGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCCGGNTTGACAGGGGGTGCGACGATGACGCGGACTGCGGCGGCGGCAGCGGCGGCGGGGGATTTGGGGAGGAGGAGGAGGGGGGAAAGGNTGGTGTNGCTNGGGCGGCGAGGAGGCTGTCGTGGGCGCAGGTGGAGGCGATGACGGGCGGGTTCACGTCGGCGGTGGTCNCGCGAGGGCGGGTTCAGCACGGTNGTACC]

[+] EMBL OSS13519A            [CTCTCGCCTTTCCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAGCAGAGAAGGAGCAACGCNTGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCTTGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCCGGNTTGACAGGGGGTGCGACGATGACGCGGACTGCGGCGGCGGCAGCGGCGGCGGGGGATTTGGGGAGGAGGAGGAGGGGGGAAAGGNTGGTGTNGCTNGGGCGGCGAGGAGGCTGTCGTGGGCGCAGGTGGAGGCGATGACGGGCGGGTTCACGTCGGCGGTGGTCNCGCGAGGGCGGGTTCAGCACGGTNGTACC]




>consensus_1169#0
CTCTCGCCTTTCCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAG
CAGAGAAGGAGCAACGCNTGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCT
TGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCCGGNTTGACAGGGGGTGCGACG
ATGACGCGGACTGCGGCGGCGGCAGCGGCGGCGGGGGATTTGGGGAGGAGGAGGAGGGGG
GAAAGGNTGGTGTNGCTNGGGCGGCGAGGAGGCTGTCGTGGGCGCAGGTGGAGGCGATGA
CGGGCGGGTTCACGTCGGCGGTGGTCNCGCGAGGGCGGGTTCAGCACGGTNGTACC

consensusID : consensus_1169#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [CCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAGCAGAGAAGGAGCAACGCNGGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCTTGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCGCGNGTNGACAGGGGGTGCGACGATGACGCGGGGACGATGCCGTGGGCGCGGCGCGGTACGGTGGCGCTTGCAGGTGGCGCGGGCGCTTGGAGTACCTTGCACGACCGGTGCGAGCCCGCGGTGGTGCACGGCGACGTCAAGGCGTCGAACGTGCTTNCTCGAC]

[+] EMBL C73900               [CCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAGCAGAGAAGGAGCAACGCNGGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCTTGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCGCGNGTNGACAGGGGGTGCGACGATGACGCGGGGACGATGCCGTGGGCGCGGCGCGGTACGGTGGCGCTTGCAGGTGGCGCGGGCGCTTGGAGTACCTTGCACGACCGGTGCGAGCCCGCGGTGGTGCACGGCGACGTCAAGGCGTCGAACGTGCTTNCTCGAC]




>consensus_1169#1
CCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAGCAGAGAAGGAG
CAACGCNGGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCTTGTGCTGCGGC
TGCGGCGGGAACATGGCGGCCTCGGCCGCGNGTNGACAGGGGGTGCGACGATGACGCGGG
GACGATGCCGTGGGCGCGGCGCGGTACGGTGGCGCTTGCAGGTGGCGCGGGCGCTTGGAG
TACCTTGCACGACCGGTGCGAGCCCGCGGTGGTGCACGGCGACGTCAAGGCGTCGAACGT
GCTTNCTCGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1169#0      CTCTCGCCTTTCCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAG 60
consensus_1169#1      -----------CCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAG 49
                                 *************************************************

consensus_1169#0      CAGAGAAGGAGCAACGCNTGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCT 120
consensus_1169#1      CAGAGAAGGAGCAACGCNGGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCT 109
                      ****************** *****************************************

consensus_1169#0      TGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCC-CGGNTTGACAGGGGGTGCGAC 179
consensus_1169#1      TGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCGCGNGTNGACAGGGGGTGCGAC 169
                      ************************************** **  * ***************

consensus_1169#0      GATGACGCGGACTGCGGCGGCGGCAGCGGCGGCGGGGGATTTGGGGAGGAGGAGGAGGGG 239
consensus_1169#1      GATGACGCGGGG-ACGATGCCGTGGGCG-CGGCGCGGTACGGTGGCGCTTGCAGGTGGCG 227
                      **********    **  * **   *** ***** ** *    **     * *** ** *

consensus_1169#0      GGAAAGGNTGGTGTNGCTNGGGCGGCGAGGAGGCTGTCGTGGGCGCAGGTGGAGGCGATG 299
consensus_1169#1      CGGGCGCTTGGAGTACCTTGCACGACCGGTGCGAGCCCGCGGTGGTGCACGGCGACGTCA 287
                       *   *  *** **  ** *  ** *  *   *    ** **  *     ** * **   

consensus_1169#0      ACGGGCGGGTTCACGTCGGCGGTGGTCNCGCGAGGGCGGGTTCAGCACGGTNGTACC 356
consensus_1169#1      AGG----------CGTCGAACGTGCTTNCTCGAC----------------------- 311
                      * *          *****   *** * ** ***