These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 779 fasta sequence [GAGTAGAAAGTTGGTCGATCACTCCATCGATCCATCGATCGATCGCTAGCTACTCGCCGTCGTCGACCGGTCGATCCGCCATTAGCGAGCTGCAAGGCTCTCTCGCTTATAAATCTTCCGAGTAGGCAAGCCTCAATCGATCCGAGAGTTTGGTCGTTGATCGAGCTGATCGATCGACCGGTGAGTGGTGCGTGGTGTGCGGCCATGGACGACGGCGGCGGCGGCGGCGGCGGCGACTCGTCGCCGGCTTCGTACATCAGATT------GCATCTGATCGAGAAGTGCATCTGCTACAACATGAACAAGGAGGAATGCATGGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC-TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG-CCGTTATTATGTAC-GTTTTGCCCCGAAAATAA-TTAAGATTC-GGATTCGCAGCTAGCCA-TCGTCTA-GTTCAGCCGGT-GGTG-TTGC-ATGCAT-CCGGAAGATGACGTACGTGTGTACACATATATTCACATTCGAGCGGCCGCACCGGGTNG] [+] EMBL CF292197 [GAGTAGAAAGTTGGTCGATCACTCCATCGATCCATCGATCGATCGCTAGCTACTCGCCGTCGTCGACCGGTCGATCCGCCATTAGCGAGCTGCAAGGCTCTCTCGCTTATAAATCTTCCGAGTAGGCAAGCCTCAATCGATCCGAGAGTTTGGTCGTTGATCGAGCTGATCGATCGACCGGTGAGTGGTGCGTGGTGTGCGGCCATGGACGACGGCGGCGGCGGCGGCGGCGGCGACTCGTCGCCGGCTTCGTACATCAGATT GCATCTGATCGAGAAGTGCATCTGCTACAACATGAACAAGGAGGAATGCATGGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG CCGTTATTA ] [+] EMBL AK108007 [ ATCACTCCATCGATCCATCGATCGATCGCTAGCTACTCGCCGTCGTCGACCGGTCGATCCGCCATTAGCGAGCTGCAAGGCTCTCTCGCTTATAAATCTTCCGAGTAGGCAAGCCTCAATCGATCCGAGAGTTTGGTCGTTGATCGAGCTGATCGATCGACCGGTGAGTGGTGCGTGGTGTGCGGCCATGGACGACGGCGGCGGCGGCGGCGGCGACGACTCGTCGCCGGCTTCGTACATCAGATTGGTGCAGCATCTGATCGAGAAGTGCATCTGCTACAACATGAACAAGGAGGAATGCATGGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG CCGTTATTATGTAC GTTTTGCCCCGAAAATAA TTAAGATTC GG ] [+] EMBL AU065029 [ AAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG CCGTTATTATGTAC GTTTTGCCCCGAAAATAA TTAAGATTC GGATTCGCAGCTAGCCA TCGTCTA GTTCAGCCGGT GGTGTTTGC ATGCAT CCGGAAGATGACGTACGTGTGTACACATATATTCACATTCGAGCGGCCGCACCGGGTNG] [+] EMBL AU094939 [ AAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG CCGTTATTATGTAC GTTTTGCCCCGAAAATAA TTAAGATTC GGATTCGCAGCTAGCCA TCGTCTA GTTCAGCCGGT GGTG TTGC ATGCAT CCGGAAGATGACGTACGTGTGTACACATATAT ] [+] EMBL AU094985 [ AAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG CCGTTATTATGTAC GTTTTGCCCCGAAAATAA TTAAGATTC GGATTCGCAGCTAGCCA TCGTCTA GTTCAGCCGGT GGTG TTGC ATGCAT CCGGAAGATGACGTACGTGTGTACACATATAT ] [+] EMBL AU163673 [ AAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG CCGTTATTATGTAC GTTTTGCCCCGAAAATAA TTAAGATTC GGATTCGCAGCTAGCCA TCGTCTA GTTCAGCCGGT GGTG TTGC ATGCAT CCGGAAGATGACGTACGTGTGTACACATATAT ] [+] EMBL AU065138 [ AAGGAGCTTGAGAAGGAGAACAGCGAGTNCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTACTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGANGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTNATGTAG CCGTAATTATGTAC GTTTTGCCCCGAAAATAA TTAAGATTC GGATTCGCAGCTAGCCA TCGTCTA GTTCAGCCGGT GGTG TGC ATGCATCCCGGAAGATGACGTc ] [+] EMBL AU064131 [ AAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTACTTGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAGCCCGTTATTATGTACGGTTTTGCCCCGAAAATAANTTAGGATTCGGGATTCGAANTTAGCCATTGGTTTANGTTCAGCCCGTGGGTG TTTCAATGCAatc ] consensusID : consensus_11697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [GGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGGTAATTCGCTATTTATAGCTTCACGCCACATTTGCATAAATGGCTAAACATGTTTAGTACCTTTCTTTTTAAGTACTATTTACCTAGGAGTTTATTACTTGCATTGCAACTGGTGCGGTGCATATGCACATGCAGAAGCTGTGGCTTTCATCAATTAATGCATTACATTGTGCACGCTGCATGCGTTTAGTTAATTTGTTTGGCCATCGGAGAAAAACTCCCATGTCTCTTTTTTTCCCCTTGAAATACGAATATAAGATGAATACTCCGTATTCTATATGACGATATCTGCTCATTCGTCGAGAATTTTTCAATATTTTTTCTTGATTATGCTGTCTGTGAGCA] [+] EMBL AU174763 [GGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGGTAATTCGCTATTTATAGCTTCACGCCACATTTGCATAAATGGCTAAACATGTTTAGTACCTTTCTTTTTAAGTACTATTTACCTAGGAGTTTATTACTTGCATTGCAACTGGTGCGGTGCATATGCACATGCAGAAGCTGTGGCTTTCATCAATTAATGCATTACATTGTGCACGCTGCATGCGTTTAGTTAATTTGTTTGGCCATCGGAGAAAAACTCCCATGTCTCTTTTTTTCCCCTTGAAATACGAATATAAGATGAATACTCCGTATTCTATATGACGATATCTGCTCATTCGTCGAGAATTTTTCAATATTTTTTCTTGATTATGCTGTCTGTGAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11697#0 GAGTAGAAAGTTGGTCGATCACTCCATCGATCCATCGATCGATCGCTAGCTACTCGCCGT 60 consensus_11697#1 ------------------------------------------------------------ consensus_11697#0 CGTCGACCGGTCGATCCGCCATTAGCGAGCTGCAAGGCTCTCTCGCTTATAAATCTTCCG 120 consensus_11697#1 ------------------------------------------------------------ consensus_11697#0 AGTAGGCAAGCCTCAATCGATCCGAGAGTTTGGTCGTTGATCGAGCTGATCGATCGACCG 180 consensus_11697#1 ------------------------------------------------------------ consensus_11697#0 GTGAGTGGTGCGTGGTGTGCGGCCATGGACGACGGCGGCGGCGGCGGCGGCGGCGACTCG 240 consensus_11697#1 ------------------------------------------------------------ consensus_11697#0 TCGCCGGCTTCGTACATCAGATTGCATCTGATCGAGAAGTGCATCTGCTACAACATGAAC 300 consensus_11697#1 ------------------------------------------------------------ consensus_11697#0 AAGGAGGAATGCATGGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCC 360 consensus_11697#1 --------------GGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCC 46 ********************************************** consensus_11697#0 ACCGTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGC 420 consensus_11697#1 ACCG-------GTAATTCGCTATTTATAGCTTCACG-----CCACATTTGCATAAATGGC 94 **** * * * * * * * * * * * ** * ** ** *** consensus_11697#0 CAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCC 480 consensus_11697#1 TAAACATGTTTAGTACCTTTCTTTTTAAGTACTA--TTTACCTAGGAGTTTATTACTTGC 152 ** * * * * ** * ** * * * **** * * ** * consensus_11697#0 AAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTA 540 consensus_11697#1 ATTGCAACTGGTGC------------GGTGCATAT---GCACATGCAGAAGCTGTGGCT- 196 * * * ** * ******* **** * ** * **** consensus_11697#0 CTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTACTGTCTTACATCTAGCTGTT 600 consensus_11697#1 ----TTCATCAATTAATGCATTACATTGT-GCACGCTGCA-TGCGTTTAGTTAATTTGTT 250 * ** * ** *** * * ** * ** * * ** ** * * **** consensus_11697#0 CATAGTACATAGCGTATAGTAGTAATGTAGCCGTTATTATGTACGTTTTGCCCCGAAAAT 660 consensus_11697#1 --TGGCCATCGGAGAAAAACTCCCATGTCTCTTTTTTTCCCCTTGAAATACGAATATAAG 308 * * * * * * **** * ** ** * * * * ** consensus_11697#0 AATTAAGATTCGGATTCGCAGCTA-GCCATCGTCTAGTTCAGCCGGTGGTGTTGCATGCA 719 consensus_11697#1 ATGAATACTCCGTATTCTATATGACGATATCTGCTCATTCGTCGAGAATTTTTCAATATT 368 * * * ** **** * * *** ** *** * * * ** ** consensus_11697#0 TCCGGAAGATGACGTACGTGTGTACACATATATTCACATTCGAGCGGCCGCACCGGGTNG 779 consensus_11697#1 TTTTCTTGATTATGC-TGTCTGTGAGCA-------------------------------- 395 * *** * * ** *** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||