cluster # 11697

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Oryza sativa
cluster # 11697 cluster # 11697 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11697#0 length = 779 sequences # 8

consensus_11697#1 length = 395 sequences # 1

consensusID : consensus_11697#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 779
fasta sequence

                              [GAGTAGAAAGTTGGTCGATCACTCCATCGATCCATCGATCGATCGCTAGCTACTCGCCGTCGTCGACCGGTCGATCCGCCATTAGCGAGCTGCAAGGCTCTCTCGCTTATAAATCTTCCGAGTAGGCAAGCCTCAATCGATCCGAGAGTTTGGTCGTTGATCGAGCTGATCGATCGACCGGTGAGTGGTGCGTGGTGTGCGGCCATGGACGACGGCGGCGGCGGCGGCGGCGGCGACTCGTCGCCGGCTTCGTACATCAGATT------GCATCTGATCGAGAAGTGCATCTGCTACAACATGAACAAGGAGGAATGCATGGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC-TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG-CCGTTATTATGTAC-GTTTTGCCCCGAAAATAA-TTAAGATTC-GGATTCGCAGCTAGCCA-TCGTCTA-GTTCAGCCGGT-GGTG-TTGC-ATGCAT-CCGGAAGATGACGTACGTGTGTACACATATATTCACATTCGAGCGGCCGCACCGGGTNG]

[+] EMBL CF292197             [GAGTAGAAAGTTGGTCGATCACTCCATCGATCCATCGATCGATCGCTAGCTACTCGCCGTCGTCGACCGGTCGATCCGCCATTAGCGAGCTGCAAGGCTCTCTCGCTTATAAATCTTCCGAGTAGGCAAGCCTCAATCGATCCGAGAGTTTGGTCGTTGATCGAGCTGATCGATCGACCGGTGAGTGGTGCGTGGTGTGCGGCCATGGACGACGGCGGCGGCGGCGGCGGCGGCGACTCGTCGCCGGCTTCGTACATCAGATT      GCATCTGATCGAGAAGTGCATCTGCTACAACATGAACAAGGAGGAATGCATGGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG CCGTTATTA                                                                                                                                                     ]
[+] EMBL AK108007             [                 ATCACTCCATCGATCCATCGATCGATCGCTAGCTACTCGCCGTCGTCGACCGGTCGATCCGCCATTAGCGAGCTGCAAGGCTCTCTCGCTTATAAATCTTCCGAGTAGGCAAGCCTCAATCGATCCGAGAGTTTGGTCGTTGATCGAGCTGATCGATCGACCGGTGAGTGGTGCGTGGTGTGCGGCCATGGACGACGGCGGCGGCGGCGGCGGCGACGACTCGTCGCCGGCTTCGTACATCAGATTGGTGCAGCATCTGATCGAGAAGTGCATCTGCTACAACATGAACAAGGAGGAATGCATGGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG CCGTTATTATGTAC GTTTTGCCCCGAAAATAA TTAAGATTC GG                                                                                                                ]
[+] EMBL AU065029             [                                                                                                                                                                                                                                                                                                                                                                                       AAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG CCGTTATTATGTAC GTTTTGCCCCGAAAATAA TTAAGATTC GGATTCGCAGCTAGCCA TCGTCTA GTTCAGCCGGT GGTGTTTGC ATGCAT CCGGAAGATGACGTACGTGTGTACACATATATTCACATTCGAGCGGCCGCACCGGGTNG]
[+] EMBL AU094939             [                                                                                                                                                                                                                                                                                                                                                                                       AAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG CCGTTATTATGTAC GTTTTGCCCCGAAAATAA TTAAGATTC GGATTCGCAGCTAGCCA TCGTCTA GTTCAGCCGGT GGTG TTGC ATGCAT CCGGAAGATGACGTACGTGTGTACACATATAT                           ]
[+] EMBL AU094985             [                                                                                                                                                                                                                                                                                                                                                                                       AAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG CCGTTATTATGTAC GTTTTGCCCCGAAAATAA TTAAGATTC GGATTCGCAGCTAGCCA TCGTCTA GTTCAGCCGGT GGTG TTGC ATGCAT CCGGAAGATGACGTACGTGTGTACACATATAT                           ]
[+] EMBL AU163673             [                                                                                                                                                                                                                                                                                                                                                                                       AAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAG CCGTTATTATGTAC GTTTTGCCCCGAAAATAA TTAAGATTC GGATTCGCAGCTAGCCA TCGTCTA GTTCAGCCGGT GGTG TTGC ATGCAT CCGGAAGATGACGTACGTGTGTACACATATAT                           ]
[+] EMBL AU065138             [                                                                                                                                                                                                                                                                                                                                                                                       AAGGAGCTTGAGAAGGAGAACAGCGAGTNCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTACTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGANGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTAC TGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTNATGTAG CCGTAATTATGTAC GTTTTGCCCCGAAAATAA TTAAGATTC GGATTCGCAGCTAGCCA TCGTCTA GTTCAGCCGGT GGTG  TGC ATGCATCCCGGAAGATGACGTc                                            ]
[+] EMBL AU064131             [                                                                                                                                                                                                                                                                                                                                                                                       AAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTACTTGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAGCCCGTTATTATGTACGGTTTTGCCCCGAAAATAANTTAGGATTCGGGATTCGAANTTAGCCATTGGTTTANGTTCAGCCCGTGGGTG TTTCAATGCAatc                                                          ]




>consensus_11697#0
GAGTAGAAAGTTGGTCGATCACTCCATCGATCCATCGATCGATCGCTAGCTACTCGCCGT
CGTCGACCGGTCGATCCGCCATTAGCGAGCTGCAAGGCTCTCTCGCTTATAAATCTTCCG
AGTAGGCAAGCCTCAATCGATCCGAGAGTTTGGTCGTTGATCGAGCTGATCGATCGACCG
GTGAGTGGTGCGTGGTGTGCGGCCATGGACGACGGCGGCGGCGGCGGCGGCGGCGACTCG
TCGCCGGCTTCGTACATCAGATTGCATCTGATCGAGAAGTGCATCTGCTACAACATGAAC
AAGGAGGAATGCATGGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCC
ACCGTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGC
CAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCC
AAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTA
CTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTACTGTCTTACATCTAGCTGTT
CATAGTACATAGCGTATAGTAGTAATGTAGCCGTTATTATGTACGTTTTGCCCCGAAAAT
AATTAAGATTCGGATTCGCAGCTAGCCATCGTCTAGTTCAGCCGGTGGTGTTGCATGCAT
CCGGAAGATGACGTACGTGTGTACACATATATTCACATTCGAGCGGCCGCACCGGGTNG

consensusID : consensus_11697#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [GGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGGTAATTCGCTATTTATAGCTTCACGCCACATTTGCATAAATGGCTAAACATGTTTAGTACCTTTCTTTTTAAGTACTATTTACCTAGGAGTTTATTACTTGCATTGCAACTGGTGCGGTGCATATGCACATGCAGAAGCTGTGGCTTTCATCAATTAATGCATTACATTGTGCACGCTGCATGCGTTTAGTTAATTTGTTTGGCCATCGGAGAAAAACTCCCATGTCTCTTTTTTTCCCCTTGAAATACGAATATAAGATGAATACTCCGTATTCTATATGACGATATCTGCTCATTCGTCGAGAATTTTTCAATATTTTTTCTTGATTATGCTGTCTGTGAGCA]

[+] EMBL AU174763             [GGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGGTAATTCGCTATTTATAGCTTCACGCCACATTTGCATAAATGGCTAAACATGTTTAGTACCTTTCTTTTTAAGTACTATTTACCTAGGAGTTTATTACTTGCATTGCAACTGGTGCGGTGCATATGCACATGCAGAAGCTGTGGCTTTCATCAATTAATGCATTACATTGTGCACGCTGCATGCGTTTAGTTAATTTGTTTGGCCATCGGAGAAAAACTCCCATGTCTCTTTTTTTCCCCTTGAAATACGAATATAAGATGAATACTCCGTATTCTATATGACGATATCTGCTCATTCGTCGAGAATTTTTCAATATTTTTTCTTGATTATGCTGTCTGTGAGCA]




>consensus_11697#1
GGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGGTAATTCGCT
ATTTATAGCTTCACGCCACATTTGCATAAATGGCTAAACATGTTTAGTACCTTTCTTTTT
AAGTACTATTTACCTAGGAGTTTATTACTTGCATTGCAACTGGTGCGGTGCATATGCACA
TGCAGAAGCTGTGGCTTTCATCAATTAATGCATTACATTGTGCACGCTGCATGCGTTTAG
TTAATTTGTTTGGCCATCGGAGAAAAACTCCCATGTCTCTTTTTTTCCCCTTGAAATACG
AATATAAGATGAATACTCCGTATTCTATATGACGATATCTGCTCATTCGTCGAGAATTTT
TCAATATTTTTTCTTGATTATGCTGTCTGTGAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11697#0      GAGTAGAAAGTTGGTCGATCACTCCATCGATCCATCGATCGATCGCTAGCTACTCGCCGT 60
consensus_11697#1      ------------------------------------------------------------
                                                                                   

consensus_11697#0      CGTCGACCGGTCGATCCGCCATTAGCGAGCTGCAAGGCTCTCTCGCTTATAAATCTTCCG 120
consensus_11697#1      ------------------------------------------------------------
                                                                                   

consensus_11697#0      AGTAGGCAAGCCTCAATCGATCCGAGAGTTTGGTCGTTGATCGAGCTGATCGATCGACCG 180
consensus_11697#1      ------------------------------------------------------------
                                                                                   

consensus_11697#0      GTGAGTGGTGCGTGGTGTGCGGCCATGGACGACGGCGGCGGCGGCGGCGGCGGCGACTCG 240
consensus_11697#1      ------------------------------------------------------------
                                                                                   

consensus_11697#0      TCGCCGGCTTCGTACATCAGATTGCATCTGATCGAGAAGTGCATCTGCTACAACATGAAC 300
consensus_11697#1      ------------------------------------------------------------
                                                                                   

consensus_11697#0      AAGGAGGAATGCATGGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCC 360
consensus_11697#1      --------------GGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCC 46
                                     **********************************************

consensus_11697#0      ACCGTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGC 420
consensus_11697#1      ACCG-------GTAATTCGCTATTTATAGCTTCACG-----CCACATTTGCATAAATGGC 94
                       ****       * *  * *  *   * * *  *  *     *  **  * **  ** ***

consensus_11697#0      CAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGGTTCC 480
consensus_11697#1      TAAACATGTTTAGTACCTTTCTTTTTAAGTACTA--TTTACCTAGGAGTTTATTACTTGC 152
                        **  *     *  * *          ** * **  * * *  ****   *  *  ** *

consensus_11697#0      AAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTA 540
consensus_11697#1      ATTGCAACTGGTGC------------GGTGCATAT---GCACATGCAGAAGCTGTGGCT- 196
                       *    * * ** *             *******     ****   *   **  * **** 

consensus_11697#0      CTTGTACAGTAGGATATCCATCAAGTCGTAGTACCTCGTACTGTCTTACATCTAGCTGTT 600
consensus_11697#1      ----TTCATCAATTAATGCATTACATTGT-GCACGCTGCA-TGCGTTTAGTTAATTTGTT 250
                           * **  *    ** *** *  * ** * **   * * **  **   *  *  ****

consensus_11697#0      CATAGTACATAGCGTATAGTAGTAATGTAGCCGTTATTATGTACGTTTTGCCCCGAAAAT 660
consensus_11697#1      --TGGCCATCGGAGAAAAACTCCCATGTCTCTTTTTTTCCCCTTGAAATACGAATATAAG 308
                         * *      * * * *      ****  *  ** **      *   * *    * ** 

consensus_11697#0      AATTAAGATTCGGATTCGCAGCTA-GCCATCGTCTAGTTCAGCCGGTGGTGTTGCATGCA 719
consensus_11697#1      ATGAATACTCCGTATTCTATATGACGATATCTGCTCATTCGTCGAGAATTTTTCAATATT 368
                       *   *   * ** ****      * *  ***  **  ***  *  *   * **  **   

consensus_11697#0      TCCGGAAGATGACGTACGTGTGTACACATATATTCACATTCGAGCGGCCGCACCGGGTNG 779
consensus_11697#1      TTTTCTTGATTATGC-TGTCTGTGAGCA-------------------------------- 395
                       *      *** * *   ** ***   **