cluster # 11704

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Oryza sativa
cluster # 11704 cluster # 11704 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11704#0 length = 1123 sequences # 5
consensus_11704#1 length = 630 sequences # 2

consensus_11704#2 length = 575 sequences # 1
consensus_11704#3 length = 423 sequences # 1

consensusID : consensus_11704#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1123
fasta sequence

                              [GCGGTTAGGAGTTCGACAGAGTGGGGAGAAAGCCGGCGAGGGAAGCCGAAGCATCGCCGCCTTCCGCCAGCGCCCCACCGGCGGCCGGCATGGACGAGGAGACGCAGAAGAAGGTGGAGTCCACGGTTCTGGAGATCCTCCGGGGCTCCGACATGGAGTCCCTCACGGAGTTCAAGGTCCGCACCGCCGCCGCCGACCGCCTCGGCATCGACCTCTCCATCCCCGACCGCAAGCGCTTCGTCCGCCGCGTCGTCGAGGGGTACCTCGAATCCCTCTCCCAGGAGGATGAGCAGGAGCAGCAGCAGGAGCAGGCCGGCGGCGCCGGCGAGGAGGGGAAGGACGAACAGGCCGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGCGGGGAGGTGGAACGAAGAGGGAGTACGATGACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAGCCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGTACAGGCTGTAAGTCCGCTATGGAGGGTCTGGAGGTACTAGGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTTGGAGACTTGGAGAAGTAATTTCTTCATATGCTCGTCTTAATATTGGAGTTAGTGATGTACACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAGCAACAAGCCTCTTTTGTTTGGATCATGAGGCACTGTCATCGGACTAACTCATCTTTATGAAGAATTAGTTCTCCGCCGCTAGATGTTAGTGTTTTTCGTTCATGCCCTTACACTTGACAATTGCGTCTTTTTGTCTGGAAGTTGCAATACTGATATGTTTTGGGCAGGTGATCTGAGCCCTTTATCA]

[+] EMBL CF321455             [GCGGTTAGGAGTTCGACAGAGTGGGGAGAAAGCCGGCGAGGGAAGCCGAAGCATCGCCGCCTTCCGCCAGCGCCCCACCGGCGGCCGGCATGGACGAGGAGACGCAGAAGAAGGTGGAGTCCACGGTTCTGGAGATCCTCCGGGGCTCCGACATGGAGTCCCTCACGGAGTTCAAGGTCCGCACCGCCGCCGCCGACCGCCTCGGCATCGACCTCTCCATCCCCGACCGCAAGCGCTTCGTCCGCCGCGTCGTCGAGGGGTACCTCGAATCCCTCTCCCAGGAGGATGAGCAGGAGCAGCAGCAGGAGCAGGCCGGCGGCGCCGGCGAGGAGGGGAAGGACGAACAGGCCGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGACGGGGGAGGTGGAACGAAGAGGGAGTACGATGACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK059936             [ CGGTTAGGAGTTCGACAGAGTGGGGAGAAAGCCGGCGAGGGAAGCCGAAGCATCGCCGCCTTCCGCCAGCGCCCCACCGGCGGCCGGCATGGACGAGGAGACGCAGAAGAAGGTGGAGTCCACGGTTCTGGAGATCCTCCGGGGCTCCGACATGGAGTCCCTCACGGAGTTCAAGGTCCGCACCGCCGCCGCCGACCGCCTCGGCATCGACCTCTCCATCCCCGACCGCAAGCGCTTCGTCCGCCGCGTCGTCGAGGGGTACCTCGAATCCCTCTCCCAGGAGGATGAGCAGGAGCAGCAGCAGGAGCAGGCCGGCGGCGCCGGCGAGGAGGGGAAGGACGAACAGGCCGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGCGGGGAGGTGGAACGAAGAGGGAGTACGATGACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAGCCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGTACAGGCTGTAAGTCCGCTATGGAGGGTCTGGAGGTACTAGGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTTGGAGACTTGGAGAAGTAATTTCTTCATATGCTCGTCTTAATATTGGAGTTAGTGATGTACACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAGCAACAAGCCTCTTTTGTTTGGATCATGAGGCACTGTCATCGGACTAACTCATCTTTATGAAGAATTAGTTCTCCGCCGCTAGATGTTAGTGTTTTTCGTTCATGCCCTTACACTTGACAATTGCGTCTTTTTGTCTGGAAGTTGCAATACTGATATGTTTTGGGCAGGTGATCTGAGCCCTTTATCA]
[+] EMBL AK104192             [                          AGAAAGCCGGCGAGGGAAGCCGAAGCATCGCCGCCTTCCGCCAGCGCCCCACCGGCGGCCGGCATGGACGAGGAGACGCAGAAGAAGGTGGAGTCCACGGTTCTGGAGATCCTCCGGGGCTCCGACATGGAGTCCCTCACGGAGTTCAAGGTCCGCACCGCCGCCGCCGACCGCCTCGGCATCGACCTCTCCATCCCCGACCGCAAGCGCTTCGTCCGCCGCGTCGTCGAGGGGTACCTCGAATCCCTCTCCCAGGAGGATGAGCAGGAGCAGCAGCAGGAGCAGGCCGGCGGCGCCGGCGAGGAGGGGAAGGACGAACAGGCCGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGCGGGGAGGTGGAACGAAGAGGGAGTACGATGACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAGCCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGTACAGGCTGTAAGTCCGCTATGGAGGGTCTGGAGGTACTAGGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTTGGAGACTTGGAGAAGTAATTTCTTCATATGCTCGTCTTAATATTGGAGTTAGTGATGTACACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGG                                                                                                                                                                                                 ]
[+] EMBL BP185005             [                                             aCGAGGCATCGCCGCCTTCCGCCAGCGCCCCACCGGCGGCCGGCATGGACGAGGAGACGCAGAAGAAGGTGGAGTCCACGGTTCTGGAGATCCTCCGGGGCTCCGACATGGAGTCCCTCACGGAGTTCAAGGTCCGCACCGCCGCCGCCGACCGCCTCGGCATCGACCTCTCCATCCCCGACCGCAAGCGCTTCGTCCGCCGCGTCGTCGAGGGGTACCTCGAATCCCTCTCCCAGGAGGATGAGCAGGAGCAGCAGCAGGAGCAGGCCGGCGGCGCCGGCGAGGAGGGGAAGGACGAACAGGCCGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGCGGGGAGGTGGAACGAAGAGGGAGTACGATGACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAGCCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGTACAGGCTG                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK070545             [                                                                               GGCGGCCGGCATGGACGAGGAGACGCAGAAGAAGGTGGAGTCCACGGTTCTGGAGATCCTCCGGGGCTCCGACATGGAGTCCCTCACGGAGTTCAAGGTCCGCACCGCCGCCGCCGACCGCCTCGGCATCGACCTCTCCATCCCCGACCGCAAGCGCTTCGTCCGCCGCGTCGTCGAGGGGTACCTCGAATCCCTCTCCCAGGAGGATGAGCAGGAGCAGCAGCAGGAGCAGGCCGGCGGCGCCGGCGAGGAGGGGAAGGACGAACAGGCCGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGCGGGGAGGTGGAACGAAGAGGGAGTACGATGACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAGCCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGTACAGGCTGTAAGTCCGCTATGGAGGGTCTGGAGGTACTAGGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTTGGAGACTTGGAGAAGTAATTTCTTCATATGCTCGTCTTAATATTGGAGTTAGTGATGTACACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAGCAACAAGCCTCTTTTGTTTGGATCATGAGGCACTGTCATCGGACTAACTCATCTTTATGAAGAATTAGT                                                                                                                      ]




>consensus_11704#0
GCGGTTAGGAGTTCGACAGAGTGGGGAGAAAGCCGGCGAGGGAAGCCGAAGCATCGCCGC
CTTCCGCCAGCGCCCCACCGGCGGCCGGCATGGACGAGGAGACGCAGAAGAAGGTGGAGT
CCACGGTTCTGGAGATCCTCCGGGGCTCCGACATGGAGTCCCTCACGGAGTTCAAGGTCC
GCACCGCCGCCGCCGACCGCCTCGGCATCGACCTCTCCATCCCCGACCGCAAGCGCTTCG
TCCGCCGCGTCGTCGAGGGGTACCTCGAATCCCTCTCCCAGGAGGATGAGCAGGAGCAGC
AGCAGGAGCAGGCCGGCGGCGCCGGCGAGGAGGGGAAGGACGAACAGGCCGAGGAGGAAG
AGGAAGAGGAGGAGGAGGAGGAGGAGGAGCGGGGAGGTGGAACGAAGAGGGAGTACGATG
ACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGT
TCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGC
CCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
CAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAG
CCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGT
ACAGGCTGTAAGTCCGCTATGGAGGGTCTGGAGGTACTAGGGTTCCTATAAACTTTTGTA
AAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTTGGAGACTTGGA
GAAGTAATTTCTTCATATGCTCGTCTTAATATTGGAGTTAGTGATGTACACTGACATGCA
TCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAGCAACAAGCCTCTTTTGTTTGGATC
ATGAGGCACTGTCATCGGACTAACTCATCTTTATGAAGAATTAGTTCTCCGCCGCTAGAT
GTTAGTGTTTTTCGTTCATGCCCTTACACTTGACAATTGCGTCTTTTTGTCTGGAAGTTG
CAATACTGATATGTTTTGGGCAGGTGATCTGAGCCCTTTATCA

consensusID : consensus_11704#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 630
fasta sequence

                              [CGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGCGGGGAGGTGGAACGAAGAGGGAGTACGATGACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAGCCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGTACAGGCTGTAAGTCCGCTATGGAGGGTCTGGAGGTACTAGGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTTGGAGACTTGGAGAAGTAATTTCTTCATA-TG-CTCGTCTTAATATTGGAGTTAGTGATGTACACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAACAACAAGCCTCTTTTGTTGGATCAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BP184628             [CGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGCGGGGAGGTGGAACGAAGAGGGAGTACGATGACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAGCCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGTACAGGCTGTAAGTCCGCTATGGAGGGTCTGGAGGTACTAGGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTTGGAGACTTGGAGAAGTAATTTCTTCATA TG CTCGTCTTAATATTGGAGTTAGTGATGTACACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAACAACAAGCCTCTTTTGTTGGATCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AA751287             [                                                                                                                                                                                                                                                                                                                                         AATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGG CAGTACAGGCTGTAAATCCGCTATGGAGGGTCTGGAGGTACTAGGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTTGGAGACTTGGAGAAGTAATTTCTTCATATTGCCTCGTCTTAATATTGGAGTT                                                                                                    ]




>consensus_11704#1
CGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGCGGGGAGGTGGAACGAAGAG
GGAGTACGATGACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGAC
TCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGG
CAAGGAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGA
TTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCA
TGTTTCAGAAGCCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTAC
TTAGGGCCAGTACAGGCTGTAAGTCCGCTATGGAGGGTCTGGAGGTACTAGGGTTCCTAT
AAACTTTTGTAAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTT
GGAGACTTGGAGAAGTAATTTCTTCATATGCTCGTCTTAATATTGGAGTTAGTGATGTAC
ACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAACAACAAGCCTCTT
TTGTTGGATCAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_11704#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [GAACGAAGAGGGAGTACGATGACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAGCCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGTACAGGCTGTAAGTCCGCTATGGAGGGTCTGGAGGTACTAGGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTTGGAGACTTGGAGAAGTAATTTCTTCATATGCTCGTCTTAATATTGGAGTTAGTGATGTACACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAGCAACAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTA]

[-] EMBL CF321456             [GAACGAAGAGGGAGTACGATGACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAGCCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGTACAGGCTGTAAGTCCGCTATGGAGGGTCTGGAGGTACTAGGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTTGGAGACTTGGAGAAGTAATTTCTTCATATGCTCGTCTTAATATTGGAGTTAGTGATGTACACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAGCAACAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTA]




>consensus_11704#2
GAACGAAGAGGGAGTACGATGACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGA
GGAGGGTGACTCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACT
TCAAGGACGGCAAGGAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAG
CATTTCGTGATTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGG
ACTGAAAGCATGTTTCAGAAGCCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCT
GGCCCTTTACTTAGGGCCAGTACAGGCTGTAAGTCCGCTATGGAGGGTCTGGAGGTACTA
GGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGG
GTAGACGGTTGGAGACTTGGAGAAGTAATTTCTTCATATGCTCGTCTTAATATTGGAGTT
AGTGATGTACACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAGCAA
CAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTA

consensusID : consensus_11704#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [TATGGAGGGTCTGGAGGTACTAAGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAATCAAACTGCATGATGCTGTGTAAGGGAGACCGGTGGAGACTTGGAAAAATAATTTCTTCATATGCTCCTCTTAATATTGGAGTTAATGATGTGCACTGACATGCCTTTGGGTTCTTTAAAAAAATAAAACATGGGGTTCAACAACAAACCTCTTTTGTTTGGATCATGAAGCACTGTCATTGGACTAACTCATCTTTATGAAAAATTAATTCTCCCCCGCTAGAAGTTAATGTTTTTTGGGCATGCCCTTACACTTGACAAATGCGTCTTTTTGTCTGGAATTTGCAATACTGATATGTTTTGGGCGCGTGATCTGAGCCCTTTTTCTTTNNNAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAA]

[+] EMBL CA758001             [TATGGAGGGTCTGGAGGTACTAAGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAATCAAACTGCATGATGCTGTGTAAGGGAGACCGGTGGAGACTTGGAAAAATAATTTCTTCATATGCTCCTCTTAATATTGGAGTTAATGATGTGCACTGACATGCCTTTGGGTTCTTTAAAAAAATAAAACATGGGGTTCAACAACAAACCTCTTTTGTTTGGATCATGAAGCACTGTCATTGGACTAACTCATCTTTATGAAAAATTAATTCTCCCCCGCTAGAAGTTAATGTTTTTTGGGCATGCCCTTACACTTGACAAATGCGTCTTTTTGTCTGGAATTTGCAATACTGATATGTTTTGGGCGCGTGATCTGAGCCCTTTTTCTTTNNNAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAA]




>consensus_11704#3
TATGGAGGGTCTGGAGGTACTAAGGTTCCTATAAACTTTTGTAAAACTTATCCCTTAATC
AAACTGCATGATGCTGTGTAAGGGAGACCGGTGGAGACTTGGAAAAATAATTTCTTCATA
TGCTCCTCTTAATATTGGAGTTAATGATGTGCACTGACATGCCTTTGGGTTCTTTAAAAA
AATAAAACATGGGGTTCAACAACAAACCTCTTTTGTTTGGATCATGAAGCACTGTCATTG
GACTAACTCATCTTTATGAAAAATTAATTCTCCCCCGCTAGAAGTTAATGTTTTTTGGGC
ATGCCCTTACACTTGACAAATGCGTCTTTTTGTCTGGAATTTGCAATACTGATATGTTTT
GGGCGCGTGATCTGAGCCCTTTTTCTTTNNNAAAAAAAAAAAAAANAAAAAAAAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11704#1      ------------------------------------------------------------
consensus_11704#2      ------------------------------------------------------------
consensus_11704#0      GCGGTTAGGAGTTCGACAGAGTGGGGAGAAAGCCGGCGAGGGAAGCCGAAGCATCGCCGC 60
consensus_11704#3      ------------------------------------------------------------
                                                                                   

consensus_11704#1      ------------------------------------------------------------
consensus_11704#2      ------------------------------------------------------------
consensus_11704#0      CTTCCGCCAGCGCCCCACCGGCGGCCGGCATGGACGAGGAGACGCAGAAGAAGGTGGAGT 120
consensus_11704#3      ------------------------------------------------------------
                                                                                   

consensus_11704#1      ------------------------------------------------------------
consensus_11704#2      ------------------------------------------------------------
consensus_11704#0      CCACGGTTCTGGAGATCCTCCGGGGCTCCGACATGGAGTCCCTCACGGAGTTCAAGGTCC 180
consensus_11704#3      ------------------------------------------------------------
                                                                                   

consensus_11704#1      ------------------------------------------------------------
consensus_11704#2      ------------------------------------------------------------
consensus_11704#0      GCACCGCCGCCGCCGACCGCCTCGGCATCGACCTCTCCATCCCCGACCGCAAGCGCTTCG 240
consensus_11704#3      ------------------------------------------------------------
                                                                                   

consensus_11704#1      ------------------------------------------------------------
consensus_11704#2      ------------------------------------------------------------
consensus_11704#0      TCCGCCGCGTCGTCGAGGGGTACCTCGAATCCCTCTCCCAGGAGGATGAGCAGGAGCAGC 300
consensus_11704#3      ------------------------------------------------------------
                                                                                   

consensus_11704#1      -------------------------------------------------CGAGGAGGAAG 11
consensus_11704#2      ------------------------------------------------------------
consensus_11704#0      AGCAGGAGCAGGCCGGCGGCGCCGGCGAGGAGGGGAAGGACGAACAGGCCGAGGAGGAAG 360
consensus_11704#3      ------------------------------------------------------------
                                                                                   

consensus_11704#1      AGGAAGAGGAGGAGGAGGAGGAGGAGGAGCGGGGAGGTGGAACGAAGAGGGAGTACGATG 71
consensus_11704#2      ---------------------------------------GAACGAAGAGGGAGTACGATG 21
consensus_11704#0      AGGAAGAGGAGGAGGAGGAGGAGGAGGAGCGGGGAGGTGGAACGAAGAGGGAGTACGATG 420
consensus_11704#3      ------------------------------------------------------------
                                                                                   

consensus_11704#1      ACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGT 131
consensus_11704#2      ACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGT 81
consensus_11704#0      ACGAGGGAGACCTCATCCTCTGCCGCCTTTCGGCCAGGAGGAGGGTGACTCTTCAGGAGT 480
consensus_11704#3      ------------------------------------------------------------
                                                                                   

consensus_11704#1      TCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGC 191
consensus_11704#2      TCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGC 141
consensus_11704#0      TCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGC 540
consensus_11704#3      -------------------------------------TATGGAGGGTCTGGAGGTACTAA 23
                                                              *  ***      ***  **  

consensus_11704#1      CCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG 251
consensus_11704#2      CCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG 201
consensus_11704#0      CCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG 600
consensus_11704#3      GGTTCCTATAAACTTTTGTAAAACTTATCCCTTAATCAA-ACTGCATGATGCTGTG---- 78
                           *  *   *    * * * * **   *  *    *  * * * **** *****    

consensus_11704#1      CAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAG 311
consensus_11704#2      CAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAG 261
consensus_11704#0      CAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAG 660
consensus_11704#3      ---TAAGGGAGACCGGTGGAGACTTGGAAAAATAATTTCTTCATATGCTCCTCTTAATA- 134
                          **  ***  **  *  * *  * * * *** **        * **   * * *  * 

consensus_11704#1      CCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGT 371
consensus_11704#2      CCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGT 321
consensus_11704#0      CCCCTTTTGCCTGTATCAAATCAAGAAGGCCTTTGTTCTGGCCCTTTACTTAGGGCCAGT 720
consensus_11704#3      ------TTGGAGTTAATGATGTGCACTGACATGCCTTTGGGTTCTTTAAAAAAATAAAAC 188
                             ***    **   *        * * *   **  **  *****   *     *  

consensus_11704#1      ACAGGCTGTAA-----GTCCGCTATGGA--GGGTCTGGAGGTACTAGGGTTCCTATAA-- 422
consensus_11704#2      ACAGGCTGTAA-----GTCCGCTATGGA--GGGTCTGGAGGTACTAGGGTTCCTATAA-- 372
consensus_11704#0      ACAGGCTGTAA-----GTCCGCTATGGA--GGGTCTGGAGGTACTAGGGTTCCTATAA-- 771
consensus_11704#3      ATGGGGTTCAACAACAAACCTCTTTTGTTTGGATCATGAAGCACTGTCATTGGACTAACT 248
                       *  ** *  **       ** ** * *   ** **  ** * ***    **    ***  

consensus_11704#1      -ACTTTTGT-AAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTT 480
consensus_11704#2      -ACTTTTGT-AAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTT 430
consensus_11704#0      -ACTTTTGT-AAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTT 829
consensus_11704#3      CATCTTTATGAAAAATTAATTCTCCCCC--GCTAGAAGTTAATGTTTTTTGGGCATGCCC 306
                        *  *** * **** ***   **    *  ***  * * *  *** *   *   * *   

consensus_11704#1      GGAGACTTGGAGAAGTAATTTCTTCATATGCTCGTCTTAATATTGGAGTTAGTGATGTAC 540
consensus_11704#2      GGAGACTTGGAGAAGTAATTTCTTCATATGCTCGTCTTAATATTGGAGTTAGTGATGTAC 490
consensus_11704#0      GGAGACTTGGAGAAGTAATTTCTTCATATGCTCGTCTTAATATTGGAGTTAGTGATGTAC 889
consensus_11704#3      TTACACTTGACAAATGCGTCTTTTTGTCTGGAATTTGCAATACTGATATGTTTTGGGCGC 366
                         * *****   **    * * **  * **    *   **** **   *   *   *  *

consensus_11704#1      ACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAACAACAAGCCTCTT 600
consensus_11704#2      ACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAGCAACAAA------ 544
consensus_11704#0      ACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTCCAGCAACAAGCCTCTT 949
consensus_11704#3      G-TGATCTGAGCCCTTTTTCTTTNNNAAAAAAAAA----------AAAAANAAA------ 409
                         ***  **   *    * ****   ****  * *          *  ** **       

consensus_11704#1      TTGTTGGATCAAAAAAAAAAAAAAAAAAAA------------------------------ 630
consensus_11704#2      -----AAAAAAAAAAAAAAACACTGTCATGCCGTTA------------------------ 575
consensus_11704#0      TTGTTTGGATCATGAGGCACTGTCATCGGACTAACTCATCTTTATGAAGAATTAGTTCTC 1009
consensus_11704#3      ------AAAAAAAAAAAAAA---------------------------------------- 423
                                  *  *   *                                         

consensus_11704#1      ------------------------------------------------------------
consensus_11704#2      ------------------------------------------------------------
consensus_11704#0      CGCCGCTAGATGTTAGTGTTTTTCGTTCATGCCCTTACACTTGACAATTGCGTCTTTTTG 1069
consensus_11704#3      ------------------------------------------------------------
                                                                                   

consensus_11704#1      ------------------------------------------------------
consensus_11704#2      ------------------------------------------------------
consensus_11704#0      TCTGGAAGTTGCAATACTGATATGTTTTGGGCAGGTGATCTGAGCCCTTTATCA 1123
consensus_11704#3      ------------------------------------------------------