These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2136 fasta sequence [CGCCGTCCCGATCCACTCACCGCCCGGCGCACCACCCCTCGGCGGCGGATGGCGAGGTCGGCGGCGCGGAGCGCGGGGGACGGTGGGAGCTCCTCCCTTCTCCTTCCACGGACGGCGCTCCTCCTACGTCGCGGCTTCCTCTCTCCTCTCCTCACATCATGGCGGCGGTCAAGAGGCCGGGGACGCGGCGGCGGAGGAGGCCGAGACGGGGGTGGAGCCACCGATTCCCCGCGCCCCGACGAGCTCGGCGGAGTGGCGCGGAGCTCGCCGGCGTGGAGCGGGATGGCACGGAGCTCGGCCAGGTGAGAGAGAGAGCAGAGGCCCTAAGATCTAATAGGTCAGGTCAGGGCGCCGCCGCCGCCACTCCTACCCACCACCTGTTTCTCACTCAGTCCCAGCTCGATCTCATGCAGCCTCCTCTCGCCAGCCACTTCCGTCGCCATCCCTCTGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCGAGGCGATTGAACCCGAGCGAATCGTCAGCAGCAGATCGAGGCGCCGTGCCTGGGTCTCGTCAGATTTCCAGCCCAGCAAGGCAAGGCCCAAGGACCTAAACTGTTGGGCTGTTGGGCTCGATCAAGTCAGTATATGTCCA-GGGATGCGGCGGCCCGACCACGCTGCTTCACGTCGGGCCCACCTGTCCGTCCCTTCTTCGGCTTGAAAACTCCCCGCATCCGCGCGCTCAACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCGCCAAGGATCAAGAAATCCCTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCAGCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTACGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCATCTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAATCACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTACTCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGACACTTGTGCGATTGTCTCTTCCACCAAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTCTTGTATATATACTCCGTATATCAACTTCCTTGTAACCATATCACTACATTTGTCATCTCCTCGAGAAAAAAAATATTCTAGAC] [+] EMBL CB665060 [CGCCGTCCCGATCCACTCACCGCCCGGCGCACCACCCCTCGGCGGCGGATGGCGAGGTCGGCGGCGCGGAGCGCGGGGGACGGTGGGAGCTCCTCCCTTCTCCTTCCACGGACGGCGCTCCTCCTACGTCGCGGCTTCCTCTCTCCTCTCCTCACATCATGGCGGCGGTCAAGAGGCCGGGGACGCGGCGGCGGAGGAGGCCGAGACGGGGGTGGAGCCACCGATTCCCCGCGCCCCGACGAGCTCGGCGGAGTGGCGCGGAGCTCGCCGGCGTGGAGCGGGATGGCACGGAGCTCGGCCAGGTGAGAGAGAGAGCAGAGGCCCTAAGATCTAATAGGTCAGGTCAGGGCGCCGCCGCCGCCACTCCTACCCACCACCTGTTTCTCACTCAGTCCCAGCTCGATCTCATGCAGCCTCCTCTCGCCAGCCACTTCCGTCGCCATCCCTCTGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCGAGGCGATTGAACCCGAGCGAATCGTCAGCAGCAGATCGAGGCGCCGTGCCTGGGTCTCGTCAGATTTCCAGCCCAGCAAGGCAAGGCCCAAGGACCTAAACTGTTGGGCTGTTGGGCTCGATCAAGTCAGTATATGTCCAGGGGATGCGGCGGCCCGACCACGCTGCTTCACGTCGGGCCCACCTGTCCGTCCCTTCTTCGGCTTGAAAACTCCCCGCATCCGCGCGCTCAACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCGCCAAGGATCAAGAAATCCCTTGCCAGTCGCCGCCGTC ] [+] EMBL AK106509 [ CGCCGCCGCCACTCCTACCCACCACCTGTTTCTCACTCAGTCCCAGCTCGATCTCATGCAGCCTCCTCTCGCCAGCCACTTCCGTCGCCATCCCTCTGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCGAGGCGATTGAACCCGAGCGAATCGTCAGCAGCAGATCGAGGCGCCGTGCCTGGGTCTCGTCAGATTTCCAGCCCAGCAAGGCAAGGCCCAAGGACCTAAACTGTTGGGCTGTTGGACTCGATCAAGTCAGTATATGTCCA GGGATGCGGCGGCCCGACCACGCTGCTTCACGTCGGGCCCACCTGTCCGTCCCTTCTTCGGCTTGAAAACTCCCCGCATCCGCGCGCTCAACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCGCCAAGGATCAAGAAATCCCTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCAGCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTACGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCATCTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAATCACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTACTCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGACACTTGTGCGATTGTCTCTTCCACCAAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTCTTGTATATATACTCCGTATATCAACTTCCTTGTAACCATATCACTACATTTGTCATCTCCTCGAGAAAAAAAATATTCTAGAC] [-] EMBL CB665061 [ GTGCGATTGTCTCTTCCACCAAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTCTTGTATATATACTCCGTATATCAACTTCCTTGTAACCATATCACTACAgt ] consensusID : consensus_11710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1571 fasta sequence [CCTCTCCCTCACGTTCTCCGTCGCCGTCCCGATCCACTCACCGCCCGGCGCACCACCCCTCGGCGGCGGATGGCGAGGTCGGCGGCGCGGAGCGCGGGGGACGGTGGGAGCTCCTCCCTTCTCCTTCCACGGACGGCGCTCCTCCTACGTCGCGGCTTCCTCTCTCCTCTCCTCACATCATGGCGGCTTGAAAACTCCCCGCATCCGCGCGCTCAACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCGCCAAGGATCAAGAAATCCCTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCAGCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTACGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCATCTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAATCACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTACTCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTCTTGTATATATACTCCNGTATATCAACTTCCTTGTAACCATATCACTACAT] [+] EMBL CB643427 [CCTCTCCCTCACGTTCTCCGTCGCCGTCCCGATCCACTCACCGCCCGGCGCACCACCCCTCGGCGGCGGATGGCGAGGTCGGCGGCGCGGAGCGCGGGGGACGGTGGGAGCTCCTCCCTTCTCCTTCCACGGACGGCGCTCCTCCTACGTCGCGGCTTCCTCTCTCCTCTCCTCACATCATGGCGGCTTGAAAACTCCCCGCATCCGCGCGCTCAACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCGCCAAGGATCAAGAAATCCCTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCAGCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTACGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCATCTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAATCACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTACTCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTT CCCTGCAACGCCGC ] [+] EMBL CB657139 [ GCGCGCTCAACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCGCCAAGGATCAAGAAATCCCTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCAGCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTACGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCATCTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAATCACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTACTCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCAT ] [-] EMBL CB657140 [ TTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCTTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTCTTGTATATATACTCCNGTATATCAACTTCCTTGTAACCATATCACTACAT] [-] EMBL CB643428 [ TCCAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTCTTGTATATATAGTCCNGTATATCAACTTCCTTGTAACCATATCACTACAT] [-] EMBL CB652136 [ GCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAACTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTTTTGAAGATATAC ] consensusID : consensus_11710#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [GCCGCTATTTTCAGTTATTAAGCTTCCTTATCTAATATTGTAACTGGTGGTTTCCAAAAATTCTATGGTACATTTTGGGATAATGTTTGAAGTTTCACCTGTCAAAGTTGTGCTCTGTCTGGGCTTGCTCCCTGGGAACAGTAGTCTATTGTGATATGCTTATTATGAATTGGGTTAGCATCAGATTCTCTGGATGAGCGTCGAGTTATGTTAGAATCTGCTTGTCATGTTGTATTACACATTGTGTGATGTGATTGTAAGTTGTAACAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTCGCGCCTATTCGTGATGAGGCCATGCGCCTAGGGATTGCTG] [+] EMBL AU225512 [GCCGCTATTTTCAGTTATTAAGCTTCCTTATCTAATATTGTAACTGGTGGTTTCCAAAAATTCTATGGTACATTTTGGGATAATGTTTGAAGTTTCACCTGTCAAAGTTGTGCTCTGTCTGGGCTTGCTCCCTGGGAACAGTAGTCTATTGTGATATGCTTATTATGAATTGGGTTAGCATCAGATTCTCTGGATGAGCGTCGAGTTATGTTAGAATCTGCTTGTCATGTTGTATTACACATTGTGTGATGTGATTGTAAGTTGTAACAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTCGCGCCTATTCGTGATGAGGCCATGCGCCTAGGGATTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11710#0 CGCCGTCCCGATCCACTCACCGCCCGGCGCACCACCCCTCGGCGGCGGATGGCGAGGTCG 60 consensus_11710#1 ------------------------------------------------------------ consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 GCGGCGCGGAGCGCGGGGGACGGTGGGAGCTCCTCCCTTCTCCTTCCACGGACGGCGCTC 120 consensus_11710#1 ------------------------------------------------------------ consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 CTCCTACGTCGCGGCTTCCTCTCTCCTCTCCTCACATCATGGCGGCGGTCAAGAGGCCGG 180 consensus_11710#1 ------------------------------------------------------------ consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 GGACGCGGCGGCGGAGGAGGCCGAGACGGGGGTGGAGCCACCGATTCCCCGCGCCCCGAC 240 consensus_11710#1 ------------------------------------------------------------ consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 GAGCTCGGCGGAGTGGCGCGGAGCTCGCCGGCGTGGAGCGGGATGGCACGGAGCTCGGCC 300 consensus_11710#1 ------------------------------------------------------------ consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 AGGTGAGAGAGAGAGCAGAGGCCCTAAGATCTAATAGGTCAGGTCAGGGCGCCGCCGCCG 360 consensus_11710#1 ------------------------------------------------------------ consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 CCACTCCTACCCACCACCTGTTTCTCACTCAGTCCCAGCTCGATCTCATGCAGCCTCCTC 420 consensus_11710#1 ------------------------------------------------------------ consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 TCGCCAGCCACTTCCGTCGCCATCCCTCTGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGG 480 consensus_11710#1 ------------------------------------------------------------ consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 TGGCGGCGAGGCGATTGAACCCGAGCGAATCGTCAGCAGCA-GATCGAGGCGCCGTGCCT 539 consensus_11710#1 ------------CCTCTCCCTCACGTTCTCCGTCGCCGTCCCGATCCACTCACCGC-CCG 47 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 GGGTCTCGTCAGATTTCCAGCCCAGCAAGGCAAGGCCCAAGGACCTAAACTGTTGGGCTG 599 consensus_11710#1 GCGCACCACC----CCTCGGCGGCGGATGGCGAGGTCGGCGGCGCGGAGCGCGGGGGACG 103 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 TTGGGCTCGATCAAGTCAGTATATGTCCAGGGATGCGGCGGCCCGACCACGCTGCTTCAC 659 consensus_11710#1 GTGGG---AGCTCCTCCCTTCTCCTTCCACGGA--CGGCGCTCCTCCTACGTCGCGGCTT 158 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 GTCGGGCCCACCTGTCCGTCCCTTCTT-CGGCTTGAAAACTCCCCGCATCCGCGCGCTCA 718 consensus_11710#1 CCT---CTCTCCTCTCCTCACATCATGGCGGCTTGAAAACTCCCCGCATCCGCGCGCTCA 215 consensus_11710#2 ------------------------------------------------GCCGC-TATTTT 11 **** * consensus_11710#0 ACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCG-CCAAGGATCAAGAAATCC 777 consensus_11710#1 ACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCG-CCAAGGATCAAGAAATCC 274 consensus_11710#2 CAGTTATTAAGCTTCCTTATCTAATATTGTAACTGGTGGTTTCCAAAAATTCTATGGTAC 71 ** * ** ** *** * ** * ** * * **** ** * * consensus_11710#0 CTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCA 837 consensus_11710#1 CTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCA 334 consensus_11710#2 ATTTTGGGATAATGTTTGAAGTTTCACCTG--TCAAAGTTGT-GCTCTGTCTGGGCT--T 126 ** * * ** ** * **** * * ** * ** consensus_11710#0 GCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTA 897 consensus_11710#1 GCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTA 394 consensus_11710#2 GCTCCCTGGGAACAGTAGTCTATTGT--GATATGCTTATTATGAATTGGGTTAGCATCAG 184 **** ** * ** ** * * * * * ** * * * * consensus_11710#0 CGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCAT 957 consensus_11710#1 CGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCAT 454 consensus_11710#2 ATTCTCTGGATGAGCGTCGAGTTATGTTAGAATCTGCTTG-----TCATGTTGTATTACA 239 * * * ** * * * *** * ** * ** consensus_11710#0 CTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACAC 1017 consensus_11710#1 CTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACAC 514 consensus_11710#2 CATTGTGTGAT-GTGATTGTAAGTTGTAAC--------AGGAGTCCTTAAGTGATTACAC 290 * * ** ** * * * *** * ********************** consensus_11710#0 AAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAA 1077 consensus_11710#1 AAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAA 574 consensus_11710#2 AAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAA 350 ************************************************************ consensus_11710#0 GGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAAT 1137 consensus_11710#1 GGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAAT 634 consensus_11710#2 GGTCGCGCCTATTCGTGATGAGGCCATGCGCCTAGGGATTGCTG---------------- 394 *** ************* ************************** consensus_11710#0 CACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTAC 1197 consensus_11710#1 CACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTAC 694 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 TCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGACAC 1257 consensus_11710#1 TCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAG---- 750 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 TTGTGCGATTGTCTCTTCCACCAAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGAC 1317 consensus_11710#1 -------------------------TGCGTAGAGGTACAGCATAGAAGGGAGTACGAGAC 785 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 TATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGC 1377 consensus_11710#1 TATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGC 845 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 CTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGA 1437 consensus_11710#1 CTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGA 905 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 TATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATAT 1497 consensus_11710#1 TATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATAT 965 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 GCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGA 1557 consensus_11710#1 GCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGA 1025 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 CCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCC 1617 consensus_11710#1 CCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCC 1085 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 ATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGC 1677 consensus_11710#1 ATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGC 1145 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 ACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCT 1737 consensus_11710#1 ACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCT 1205 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 TCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTT 1797 consensus_11710#1 TCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTT 1265 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 GGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGT 1857 consensus_11710#1 GGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGT 1325 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 GCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACA 1917 consensus_11710#1 GCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACA 1385 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 CAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAA 1977 consensus_11710#1 CAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAA 1445 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 ACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTT 2037 consensus_11710#1 ACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTT 1505 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 CCTTTTGTTAATGTTCTTGTATATATACTCCG-TATATCAACTTCCTTGTAACCATATCA 2096 consensus_11710#1 CCTTTTGTTAATGTTCTTGTATATATACTCCNGTATATCAACTTCCTTGTAACCATATCA 1565 consensus_11710#2 ------------------------------------------------------------ consensus_11710#0 CTACATTTGTCATCTCCTCGAGAAAAAAAATATTCTAGAC 2136 consensus_11710#1 CTACAT---------------------------------- 1571 consensus_11710#2 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||