cluster # 11731

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Oryza sativa
cluster # 11731 cluster # 11731 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11731#0 length = 1702 sequences # 5
consensus_11731#1 length = 1477 sequences # 2

consensus_11731#2 length = 690 sequences # 1
consensus_11731#3 length = 386 sequences # 1

consensusID : consensus_11731#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1702
fasta sequence

                              [GTAGTAGTAGTAGGAGACGACATCCATGGCCGCCGTCGCCTTCCGCTTGGGACAGCGCGTGCACGCCGCCGGCGACCCCGCCCGCGTCGGCACCGTGCGTTACCTCGGCCCTGTCGACGGCCACCCCGGAGACTGGCTGGGCGTCGACTGGGACGCCGGCGCCGGCGGCCGCCATGACGGGTCGCTCGCCGGCCGCCGCTACTTCGTTGCCGCCGGGGAACGCTCCGCCTCCTTCGCGCGCCCCACCGCGCTCAGCGCCGGGATCACGCTCCCCGACGCCATACGCAACCGCTACCGTGTCGAGGAATTCACCAAGGAGGAACAAGATGAAATGTATGTCTTCTCATCAAGTCAGAAGCGCGTGTCAGTGGAATTGGTTGGCAAGAACAAAGTTGAGGAAAAGCTGAAAAACCTCAATGATCTGACCAGTGCATCTGTATCCTACATGGGAGTAAGCTCAATTGGGCCAGGAGATGAACTAAAGAATTTGGTTCCAAATCTCAGACAGCTTGATTTAACTGGAAATCTTCTCTCTCAGTGGCAAGTATGTACCTCAAGAGACTAACATTATGGATATATTCTCTCTGTGTGAAGCTCTGGCATCACTGGAAATTCTTGATTTGACAAACAATACCATGGAGAATGACTTTACTGACAGTTCATCTGTCAAGAATATCCGTGTTTTGGTTCTCAACTACTGTGGTGTAACATGGGAACTGGTTGAAAAGATTAAAGTCTCATTTTCATGTCTCAGTGAACTCCATCTAATGACGAACAGGATAAAAGCAATGATGGATCTAACCAGATAGATGAGGTCCTTTCTGTGGATTCACTTAACCTCTTTCCGAGTTTAACAGATGTCAGGCTTTCTGATAATCCTGTAGCTGACCCTGCCAAGGGCGGCGTGCCTCGATTTGTGCTTATCGCCCGACTAGGAAAAGTTAAAATACTGAATGGTAGTGAGATAAGTCCACGTGAGCGAAGGGAAGCAGAGATACGATATGTTCGCCTTGTTATGGGAAAAGCTGAATCATATGATCCTGAAGAGATCAAACGGCTGCACCCT-----AGATTTGCTGAGCTGAAAGCCTTTCATGGTATTGAGGATGAGAAGCCGAGTTCAAGGACTTCTGGTCCTCAAAAAATGGCTTCTGGGCTTATAAGTATCACCTTGAAATGCGTAGGGCCATCTATGGGTGAGAAGCAACCATTGACAAAGAAGCTGCCTCCTGCAACTACTGTTGGAAAGTTAAAATCTTTGTGCGAGAGCTTCTTTAAACTGAAGGACGTTAAACTGAGACTGTATCTTGAGGAAGAGGGTTGCCCTATGCCGCAATTCTTCGAGGAAGACACGGTTTCTCTCATGGAGCTTGGGATCGGCACGGGATCGACCATTATCGTGGACGAAGAAAGCTAGCCTAATCTAGTTTACTGGCATTCTTTGTGTGCGTTTTAATTTGATTTATTTGAGTAAATTTGGTGTGTTGAGCTGGAGAAAACAAAGTCCCTGTAACATGGTACAAATGCTCAAGTAACTTACA-CTCGGCAGCTTAACGCCATCAAATGTGTGTGCATGTACGTGCTCTCGAGTCTCGACTCGACCACATTATGAGTCATGACAGAAAGACAATCATTCTTGCTGTTTAGTACAATTTGAGCATAATGGCTGGTTATAGCAACTTATCCCCCCNTTTATCTTNTTTAA]

[+] EMBL AK069395             [GTAGTAGTAGTAGGAGACGACATCCATGGCCGCCGTCGCCTTCCGCTTGGGACAGCGCGTGCACGCCGCCGGCGACCCCGCCCGCGTCGGCACCGTGCGTTACCTCGGCCCTGTCGACGGCCACCCCGGAGACTGGCTGGGCGTCGACTGGGACGCCGGCGCCGGCGGCCGCCATGACGGGTCGCTCGCCGGCCGCCGCTACTTCGTTGCCGCCGGGGAACGCTCCGCCTCCTTCGCGCGCCCCACCGCGCTCAGCGCCGGGATCACGCTCCCCGACGCCATACGCAACCGCTACCGTGTCGAGGAATTCACCAAGGAGGAACAAGATGAAATGTATGTCTTCTCATCAAGTCAGAAGCGCGTGTCAGTGGAATTGGTTGGCAAGAACAAAGTTGAGGAAAAGCTGAAAAACCTCAATGATCTGACCAGTGCATCTGTATCCTACATGGGAGTAAGCTCAATTGGGCCAGGAGATGAACTAAAGAATTTGGTTCCAAATCTCAGACAGCTTGATTTAACTGGAAATCTTCTCTCTCAGTGGCAAGTATGTACCTCAAGAGACTAACATTATGGATATATTCTCTCTGTGTGAAGCTCTGGCATCACTGGAAATTCTTGATTTGACAAACAATACCATGGAGAATGACTTTACTGACAGTTCATCTGTCAAGAATATCCGTGTTTTGGTTCTCAACTACTGTGGTGTAACATGGGAACTGGTTGAAAAGATTAAAGTCTCATTTTCATGTCTCAGTGAACTCCATCTAATGACGAACAGGATAAAAGCAATGATGGATCTAACCAGATAGATGAGGTCCTTTCTGTGGATTCACTTAACCTCTTTCCGAGTTTAACAGATGTCAGGCTTTCTGATAATCCTGTAGCTGACCCTGCCAAGGGCGGCGTGCCTCGATTTGTGCTTATCGCCCGACTAGGAAAAGTTAAAATACTGAATGGTAGTGAGATAAGTCCACGTGAGCGAAGGGAAGCAGAGATACGATATGTTCGCCTTGTTATGGGAAAAGCTGAATCATATGATCCTGAAGAGATCAAACGGCTGCACCCTAGGTAAGATTTGCTGAGCTGAAAGCCTTTCATGGTATTGAGGATGAGAAGCCGAGTTCAAGGACTTCTGGTCCTCAAAAAATGGCTTCTGGGCTTATAAGTATCACCTTGAAATGCGTAGGGCCATCTATGGGTGAGAAGCAACCATTGACAAAGAAGCTGCCTCCTGCAACTACTGTTGGAAAGTTAAAATCTTTGTGCGAGAGCTTCTTTAAACTGAAGGACGTTAAACTGAGACTGTATCTTGAGGAAGAGGGTTGCCCTATGCCGCAATTCTTCGAGGAAGACACGGTTTCTCTCATGGAGCTTGGGATCGGCACGGGATCGACCATTATCGTGGACGAAGAAAGCTAGCCTAATCTAGTTTACTGGCATTCTTTGTGTGCGCTTTAATTTGATTTATTTGAGTAAATTTGGTGTGTTGAGCTGGAGAAAACAAAGTCCCTGTAACATGGTACAAATGCTCAAGTAACTTACA CTCGGCAGCTTAACGCCATCAAATGTGTGTGCATGTACGTGCTCTCGAGTCTCGACTCGACCACATTATGAGTCATGACAGAAAGACAATCATTCTTGCTGTTTAGTA                                                        ]
[-] EMBL CB673836             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGCGTGCCTCGATTTGTGCTTATCGCCCGACTAGGAAAAGTTAAAATACTGAATGGTAGTGAGATAAGTCCACGTGAGCGAAGGGAAGCAGAGATACGATATGTTCGCCTTGTTATGGGAAAAGCTGAATCATATGATCCTGAAGAGATCAAACGGCTGCACCCT     AGATTTGCTGAGCTGAAAGCCTTTCATGGTATTGAGGATGAGAAGCCGAGTTCAAGGACTTCTGGTCCTCAAAAAATGGCTTCTGGGCTTATAAGTATCACCTTGAAATGCGTAGGGCCATCTATGGGTGAGAAGCAACCATTGACAAAGAAGCTGCCTCCTGCAACTACTGTTGGAAAGTTAAAATCTTTGTGCGAGAGCTTCTTTAAACTGAAGGACGTTAAACTGAGACTGTATCTTGAGGAAGAGGGTTGCCCTATGCCGCAATTCTTCGAGGAAGACACGGTTTCTCTCATGGAGCTTGGGATCGGCACGGGATCGACCATTATCGTGGACGAAGAAAGCTAGCCTAATCTAGTTTACTGGCATTCTTTGTGTGCGTTTTAATTTGATTTATTTGAGTAAATTTGGTGTGTTGAGCTGGAGAAAACAAAGTCCCTGTAACATGGTACAAATGCTCAAGTAACTTACA CTCGGCAGCTTAACGCCATCAAATGTGTGTGCATGTACGTGCTCTCGAGTCTCGACTCGACCACATTATGAGTCATGACAGAAAGACAATCATTCTTGCTGTTTAGTcc                                                       ]
[-] EMBL CA759516             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGTTAAAATACTGAATGGTAGTGAGATAAGTCCACGTGAGCGAAGGGAAGAAGAGATACGATATGTTCGCCTCGTTATGGGAAAAGCTGAATCATATGATCCTGAAGAGATCAAACGGCTGCACCCT     AGATTTGCTGAGCTGAAAGCCTCTCATGGTATTGAGGATGAGAAGCCGAGTTCAAGGACTTCTGGTCCTCAAAAAATGGCTTCTGGGCTTATAAGTATCACCTTGAAATGCGTAGGGCCATCTATGGGTGAGAAGCAACCATTGACAAAGAAGCTGCCTCCTGCAACTACTGTTGGAAAGTTAAAATCTTTGTGCGAGAGCTTCTTTAAACTGAAGGACGTTAAACTGAGACTGTATCTTGAGGAAGAGGGTTGCCCTATGCCGCAATTCTTCGAGGAAGACACGGTTTCTCTCATGGAGCTTGGGATCGGCACGGGATCGACCATTATCGTGGACGAAGAAAGCTAGCCTAATCTAGTTTACTGGCATTCTTTGTGTGCGTTTTAATTTGATTTATTTGAGTAAATTTGGTGTGTTGAGCTGGAGAAAACAAAGTCCCTGTAACATGGTACAAATGCTCAAGTAACTTACA CTCGGCAGCTTAACGCCATCAAATGTGTGTGCATGTACGTGCTCTCGAGTCTCGACTCGACCACATTATGAGTCATGACAGAAAGACAATCA                                                                        ]
[+] EMBL AU030653             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCTGAATCATATGATCCTGAAGAGATCAAACGGCTGCACCCT     AGATTTGCTGAGCTGAAAGCCTTTCATGGTATTGAGGATGAGAAGCCGAGTTCAAGGACTTCTGGTCCTCAAAAAATGGCTTCTGGGCTTATAAGTATCACCTTGAAATGCGTAGGGCCATCTATGGGTGAGAAGCAACCATTGACAAAGAAGCTGCCTCCTGCAACTACTGTTGGAAAGTTAAAATCTTTGTGCGAGAGCTTCTTTAAACTGAAGGACGTTAAACTGAGACTGTATCTTGAGGAAGAGGGTTGCCCTATGCCGCAATTCTTCGAGGAAGACACGGTTTCTCTCATGGAGCTTGGGATCGGCACGGGATCGACCATTATCGTGGACGAAGAAAGCTAGCCTAATCTAGTTTACTGGCATTCTTTGTGTGCGTTTTAATTTGATTTATTTGAGTAAATTTGGTGTGTTGAGCTGGAGAAAACAAAGTCCCTGTAACATGGTACAAATGCTCAAGTAACTTACA CTCGGCAGCTTAACGCCATCAAATGTGTGTGCATGTACGTGCTCTCGAGTCTCGACTCGACCACATTATGAGTCATGACAGAAAGACAATCATTCTTGCTGTTTAaaaaaa                                                     ]
[+] EMBL BQ906505             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGAAAGCTAGCCTAATCTAGTTTACTGGCATTCTTTGTGTGCGTTTTAATTTGATTTATTTGAGTAAATTTGGTGTGTTGAGCTGGAGAAAAC AAGTCCCTGTAACATGGTACAAATGCTCAAGTAACTTACACCTCGGCAGCTTAACGCCATCAAATGTGTGTGCATGTACGTGCTCTCGAGTCTCGACTCGACCACATTATGAGTCATGACAGACAGACAATCATTCTTGCTGTTTAGTACCTTTTGAGCATAATGGCTGGTTATAGCAACTTATCCCCCCNTTTATCTTNTTTAA]




>consensus_11731#0
GTAGTAGTAGTAGGAGACGACATCCATGGCCGCCGTCGCCTTCCGCTTGGGACAGCGCGT
GCACGCCGCCGGCGACCCCGCCCGCGTCGGCACCGTGCGTTACCTCGGCCCTGTCGACGG
CCACCCCGGAGACTGGCTGGGCGTCGACTGGGACGCCGGCGCCGGCGGCCGCCATGACGG
GTCGCTCGCCGGCCGCCGCTACTTCGTTGCCGCCGGGGAACGCTCCGCCTCCTTCGCGCG
CCCCACCGCGCTCAGCGCCGGGATCACGCTCCCCGACGCCATACGCAACCGCTACCGTGT
CGAGGAATTCACCAAGGAGGAACAAGATGAAATGTATGTCTTCTCATCAAGTCAGAAGCG
CGTGTCAGTGGAATTGGTTGGCAAGAACAAAGTTGAGGAAAAGCTGAAAAACCTCAATGA
TCTGACCAGTGCATCTGTATCCTACATGGGAGTAAGCTCAATTGGGCCAGGAGATGAACT
AAAGAATTTGGTTCCAAATCTCAGACAGCTTGATTTAACTGGAAATCTTCTCTCTCAGTG
GCAAGTATGTACCTCAAGAGACTAACATTATGGATATATTCTCTCTGTGTGAAGCTCTGG
CATCACTGGAAATTCTTGATTTGACAAACAATACCATGGAGAATGACTTTACTGACAGTT
CATCTGTCAAGAATATCCGTGTTTTGGTTCTCAACTACTGTGGTGTAACATGGGAACTGG
TTGAAAAGATTAAAGTCTCATTTTCATGTCTCAGTGAACTCCATCTAATGACGAACAGGA
TAAAAGCAATGATGGATCTAACCAGATAGATGAGGTCCTTTCTGTGGATTCACTTAACCT
CTTTCCGAGTTTAACAGATGTCAGGCTTTCTGATAATCCTGTAGCTGACCCTGCCAAGGG
CGGCGTGCCTCGATTTGTGCTTATCGCCCGACTAGGAAAAGTTAAAATACTGAATGGTAG
TGAGATAAGTCCACGTGAGCGAAGGGAAGCAGAGATACGATATGTTCGCCTTGTTATGGG
AAAAGCTGAATCATATGATCCTGAAGAGATCAAACGGCTGCACCCTAGATTTGCTGAGCT
GAAAGCCTTTCATGGTATTGAGGATGAGAAGCCGAGTTCAAGGACTTCTGGTCCTCAAAA
AATGGCTTCTGGGCTTATAAGTATCACCTTGAAATGCGTAGGGCCATCTATGGGTGAGAA
GCAACCATTGACAAAGAAGCTGCCTCCTGCAACTACTGTTGGAAAGTTAAAATCTTTGTG
CGAGAGCTTCTTTAAACTGAAGGACGTTAAACTGAGACTGTATCTTGAGGAAGAGGGTTG
CCCTATGCCGCAATTCTTCGAGGAAGACACGGTTTCTCTCATGGAGCTTGGGATCGGCAC
GGGATCGACCATTATCGTGGACGAAGAAAGCTAGCCTAATCTAGTTTACTGGCATTCTTT
GTGTGCGTTTTAATTTGATTTATTTGAGTAAATTTGGTGTGTTGAGCTGGAGAAAACAAA
GTCCCTGTAACATGGTACAAATGCTCAAGTAACTTACACTCGGCAGCTTAACGCCATCAA
ATGTGTGTGCATGTACGTGCTCTCGAGTCTCGACTCGACCACATTATGAGTCATGACAGA
AAGACAATCATTCTTGCTGTTTAGTACAATTTGAGCATAATGGCTGGTTATAGCAACTTA
TCCCCCCNTTTATCTTNTTTAA

consensusID : consensus_11731#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1477
fasta sequence

                              [CTGCACCCTTTGTAAGGTTGTCCAATTTCCCTTCTTTACTTTTTGACACCACATGACCATGATATAACCAAAGGATTTTTCACTACATATGCCATTATTTTGCTGCAAAGGACACATGTTGTTACTTAAATGATTTCACCACATGAGCTGTGACCTTACTAACTAGAAAAGCTCTACCTAGTCAATTCCAGCCTATATGATCTCAGTTATACCTGTTATTCAACAATTAGGATTATATGTCTATCTTGATGTTTACACGCGCTTCCAAATTTGTGTTGCTTGGCTTCATTTGCTAAATTTAACTTCCCTGGGACTAGGCTGGGACAGATACCTGATGATAGTGACGCACCAATTATTAATTGGATTATGCTTAGGCAATAACGATTTGTCAATGCAGATTTGCTGAGCTGAAAGCCTTTCATGGTATTGAGGATGAGAAGCCGAGTTCAAGGACTTCTGGTCCTCAAAAAAATGGCTTCTGGGCTTATAAGTAATAATGTTGAACTATAATTAAGGCAAGAGAGTTGTATGGTATGCATGCGAGGAAGTGATTTTTTCTTTTCCTCCGTTGCACACAGGTATCACCTTGAAATGCGTAGGGCCATCTATGGGTGAGAAGCAACCATTGACAAAGAAGCTGCCTCCTGCAACTACTGTAAGTACTTCTTGGGTCCTATTACTACTTATTAGCTGTCCTTTTTTCGTGGTTGAGTCTTTGAGACCAGCAGATAGAGAAAAACGATTCTCTTTTTTCGTATGCACACTTTCCGAGCTGCTAAACGGTGTGTGCTTTACAAAAATTATTTATAGAAAAGTTGCTTTAAAAAATCATATTAATCAATTTTTCAAGTTTGAAATAATTAATACTCAATTAATCATGTGTTAATGACTCACCTCGTTTGGTGTATCTTTTCAATCTTCTCCTTTCCTTTCCTCTCAAACACAGGTTGGTTATGTTTAGCTTTCACATGCGAGATATTAGTGGCAACTTGCTGATAGTGATATAACATGCTCTCCTGTTTTGCTACGACGGCTAAATTGCCTATGATTTGCATGTTATAGGTTGGAAAGTTAAAATCTTTGTGCGAGAGCTTCTTTAAACTGAAGGACGTTAAACTGAGACTGTATCTTGAGGAAGAGGGTTGCCCTATGCCGCAATTCTTCGAGGAAGACACGGTTTCTCTCATGGAGCTTGGGATCGGCACGGGATCGACCATTATCGTGGACGAAGAAAGCTAGCCTAATCTAGTTTACTGGCATTCTTTGTGTGCGTTTTAATTTGATTTATTTGAGTAAATTTGGTGTGTTGAGCTGGAGAAAACAAAGTCCCTGTAACATGGTACAAATGCTCAAGTAACTTACACTCGGCAGCTTAACGCCATCAAATGTGTGTGCATGTACGTGCTCTCGAGTCTCGACTCGACCACATTATGAGGCATGACAGAAAGACAATCATTCTTGCTGTTTCCTAAAAGGA]

[+] EMBL CB674892             [CTGCACCCTTTGTAAGGTTGTCCAATTTCCCTTCTTTACTTTTTGACACCACATGACCATGATATAACCAAAGGATTTTTCACTACATATGCCATTATTTTGCTGCAAAGGACACATGTTGTTACTTAAATGATTTCACCACATGAGCTGTGACCTTACTAACTAGAAAAGCTCTACCTAGTCAATTCCAGCCTATATGATCTCAGTTATACCTGTTATTCAACAATTAGGATTATATGTCTATCTTGATGTTTACACGCGCTTCCAAATTTGTGTTGCTTGGCTTCATTTGCTAAATTTAACTTCCCTGGGACTAGGCTGGGACAGATACCTGATGATAGTGACGCACCAATTATTAATTGGATTATGCTTAGGCAATAACGATTTGTCAATGCAGATTTGCTGAGCTGAAAGCCTTTCATGGTATTGAGGATGAGAAGCCGAGTTCAAGGACTTCTGGTCCTCAAAAAAATGGCTTCTGGGCTTATAAGTAATAATGTTGAACTATAATTAAGGCAAGAGAGTTGTATGGTATGCATGCGAGGAAGTGATTTTTTCTTTTCCTCCGTTGCACACAGGTATCACCTTGAAATGCGTAGGGCCATCTATGGGTGAGAAGCAACCATTGACAAAGAAGCTGCCTCCTGCAACTACTGTAAGTACTTCTTGGGTCCTATTACTACTTATTAGCTGTCCTTTTTTCGTGGTTGAGTCTTTGAGACCAGCAGATAGAGAAAAACGATTCTCTTTTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB674893             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGCTGTCCTTTTTTCGTGGTTGAGTCTTTGAGACCAGCAGATAGAGAAAAACGATTCTCTTTTTTCGTATGCACACTTTCCGAGCTGCTAAACGGTGTGTGCTTTACAAAAATTATTTATAGAAAAGTTGCTTTAAAAAATCATATTAATCAATTTTTCAAGTTTGAAATAATTAATACTCAATTAATCATGTGTTAATGACTCACCTCGTTTGGTGTATCTTTTCAATCTTCTCCTTTCCTTTCCTCTCAAACACAGGTTGGTTATGTTTAGCTTTCACATGCGAGATATTAGTGGCAACTTGCTGATAGTGATATAACATGCTCTCCTGTTTTGCTACGACGGCTAAATTGCCTATGATTTGCATGTTATAGGTTGGAAAGTTAAAATCTTTGTGCGAGAGCTTCTTTAAACTGAAGGACGTTAAACTGAGACTGTATCTTGAGGAAGAGGGTTGCCCTATGCCGCAATTCTTCGAGGAAGACACGGTTTCTCTCATGGAGCTTGGGATCGGCACGGGATCGACCATTATCGTGGACGAAGAAAGCTAGCCTAATCTAGTTTACTGGCATTCTTTGTGTGCGTTTTAATTTGATTTATTTGAGTAAATTTGGTGTGTTGAGCTGGAGAAAACAAAGTCCCTGTAACATGGTACAAATGCTCAAGTAACTTACACTCGGCAGCTTAACGCCATCAAATGTGTGTGCATGTACGTGCTCTCGAGTCTCGACTCGACCACATTATGAGGCATGACAGAAAGACAATCATTCTTGCTGTTTCCTAAAAGGA]




>consensus_11731#1
CTGCACCCTTTGTAAGGTTGTCCAATTTCCCTTCTTTACTTTTTGACACCACATGACCAT
GATATAACCAAAGGATTTTTCACTACATATGCCATTATTTTGCTGCAAAGGACACATGTT
GTTACTTAAATGATTTCACCACATGAGCTGTGACCTTACTAACTAGAAAAGCTCTACCTA
GTCAATTCCAGCCTATATGATCTCAGTTATACCTGTTATTCAACAATTAGGATTATATGT
CTATCTTGATGTTTACACGCGCTTCCAAATTTGTGTTGCTTGGCTTCATTTGCTAAATTT
AACTTCCCTGGGACTAGGCTGGGACAGATACCTGATGATAGTGACGCACCAATTATTAAT
TGGATTATGCTTAGGCAATAACGATTTGTCAATGCAGATTTGCTGAGCTGAAAGCCTTTC
ATGGTATTGAGGATGAGAAGCCGAGTTCAAGGACTTCTGGTCCTCAAAAAAATGGCTTCT
GGGCTTATAAGTAATAATGTTGAACTATAATTAAGGCAAGAGAGTTGTATGGTATGCATG
CGAGGAAGTGATTTTTTCTTTTCCTCCGTTGCACACAGGTATCACCTTGAAATGCGTAGG
GCCATCTATGGGTGAGAAGCAACCATTGACAAAGAAGCTGCCTCCTGCAACTACTGTAAG
TACTTCTTGGGTCCTATTACTACTTATTAGCTGTCCTTTTTTCGTGGTTGAGTCTTTGAG
ACCAGCAGATAGAGAAAAACGATTCTCTTTTTTCGTATGCACACTTTCCGAGCTGCTAAA
CGGTGTGTGCTTTACAAAAATTATTTATAGAAAAGTTGCTTTAAAAAATCATATTAATCA
ATTTTTCAAGTTTGAAATAATTAATACTCAATTAATCATGTGTTAATGACTCACCTCGTT
TGGTGTATCTTTTCAATCTTCTCCTTTCCTTTCCTCTCAAACACAGGTTGGTTATGTTTA
GCTTTCACATGCGAGATATTAGTGGCAACTTGCTGATAGTGATATAACATGCTCTCCTGT
TTTGCTACGACGGCTAAATTGCCTATGATTTGCATGTTATAGGTTGGAAAGTTAAAATCT
TTGTGCGAGAGCTTCTTTAAACTGAAGGACGTTAAACTGAGACTGTATCTTGAGGAAGAG
GGTTGCCCTATGCCGCAATTCTTCGAGGAAGACACGGTTTCTCTCATGGAGCTTGGGATC
GGCACGGGATCGACCATTATCGTGGACGAAGAAAGCTAGCCTAATCTAGTTTACTGGCAT
TCTTTGTGTGCGTTTTAATTTGATTTATTTGAGTAAATTTGGTGTGTTGAGCTGGAGAAA
ACAAAGTCCCTGTAACATGGTACAAATGCTCAAGTAACTTACACTCGGCAGCTTAACGCC
ATCAAATGTGTGTGCATGTACGTGCTCTCGAGTCTCGACTCGACCACATTATGAGGCATG
ACAGAAAGACAATCATTCTTGCTGTTTCCTAAAAGGA

consensusID : consensus_11731#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [TTTTTTTTTTTTTCCTTTCTCGACAACATTTTAATACATGAGCAATGATCATACACAGCACAAATAATCCATACCTCTTCCTCAAGATACAGTCTCAGTTTAACGTCTTTCAGTTTAAAGAAGCTCTCGCACAAAGATTTTAACTTTCCAACCTATAACATGCAAATCATAGGCAATTTAGCCGTCGTAGCAAAACAGGAGAGCATGTTATATCACTATCAGCAAGTTGCCACTAATATCTCGCATGTGAAAGCTAAACATAACCAACCTGTGTTTGAGAGGAAAGGAAAGGAGAAAATTGAAAAGATACACCAAACGAGGTGAGTCATTAACACATGATTAATTGAGTATTAATTATTTCAAACTTGAAAAATTGATTAATATGATTTTTTAAAGCAACTTTTCTATAAATAATTTTTGTAAAGCACACACCGTTTAGCAGCTCGAAAAGTGTGCATACAAAAAAAGAGAATCGTTTTTCTCTATCTGCTGGTCTCAAAGACTCAACCACGAAAAAAGGACAGCTAATAAGTAGTAATAGGACCCAGGAAGTACTTACAGTAGTTGCAGGAGGCAGCTTCTTTGTCAATGGGTGCTTCTCACCCATAGATGGCCCTACGCATTTCAAGGTGATACCTGTGTGCAACGGAGGAAAAGGAAAAATCACTTCCTCGGATGCATACCATACAA]

[+] EMBL CA759517             [TTTTTTTTTTTTTCCTTTCTCGACAACATTTTAATACATGAGCAATGATCATACACAGCACAAATAATCCATACCTCTTCCTCAAGATACAGTCTCAGTTTAACGTCTTTCAGTTTAAAGAAGCTCTCGCACAAAGATTTTAACTTTCCAACCTATAACATGCAAATCATAGGCAATTTAGCCGTCGTAGCAAAACAGGAGAGCATGTTATATCACTATCAGCAAGTTGCCACTAATATCTCGCATGTGAAAGCTAAACATAACCAACCTGTGTTTGAGAGGAAAGGAAAGGAGAAAATTGAAAAGATACACCAAACGAGGTGAGTCATTAACACATGATTAATTGAGTATTAATTATTTCAAACTTGAAAAATTGATTAATATGATTTTTTAAAGCAACTTTTCTATAAATAATTTTTGTAAAGCACACACCGTTTAGCAGCTCGAAAAGTGTGCATACAAAAAAAGAGAATCGTTTTTCTCTATCTGCTGGTCTCAAAGACTCAACCACGAAAAAAGGACAGCTAATAAGTAGTAATAGGACCCAGGAAGTACTTACAGTAGTTGCAGGAGGCAGCTTCTTTGTCAATGGGTGCTTCTCACCCATAGATGGCCCTACGCATTTCAAGGTGATACCTGTGTGCAACGGAGGAAAAGGAAAAATCACTTCCTCGGATGCATACCATACAA]




>consensus_11731#2
TTTTTTTTTTTTTCCTTTCTCGACAACATTTTAATACATGAGCAATGATCATACACAGCA
CAAATAATCCATACCTCTTCCTCAAGATACAGTCTCAGTTTAACGTCTTTCAGTTTAAAG
AAGCTCTCGCACAAAGATTTTAACTTTCCAACCTATAACATGCAAATCATAGGCAATTTA
GCCGTCGTAGCAAAACAGGAGAGCATGTTATATCACTATCAGCAAGTTGCCACTAATATC
TCGCATGTGAAAGCTAAACATAACCAACCTGTGTTTGAGAGGAAAGGAAAGGAGAAAATT
GAAAAGATACACCAAACGAGGTGAGTCATTAACACATGATTAATTGAGTATTAATTATTT
CAAACTTGAAAAATTGATTAATATGATTTTTTAAAGCAACTTTTCTATAAATAATTTTTG
TAAAGCACACACCGTTTAGCAGCTCGAAAAGTGTGCATACAAAAAAAGAGAATCGTTTTT
CTCTATCTGCTGGTCTCAAAGACTCAACCACGAAAAAAGGACAGCTAATAAGTAGTAATA
GGACCCAGGAAGTACTTACAGTAGTTGCAGGAGGCAGCTTCTTTGTCAATGGGTGCTTCT
CACCCATAGATGGCCCTACGCATTTCAAGGTGATACCTGTGTGCAACGGAGGAAAAGGAA
AAATCACTTCCTCGGATGCATACCATACAA

consensusID : consensus_11731#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence

                              [AATAAGAACATGCTAAAACATGTAACATATCCATCCAATCCTCCTCCACTAGGATCTCTTGGCGATGCAGCTGTTTTGCCTTTTGAAAAACTACGAGTTCTTCTCTTAGGATCTAACCAGATAGATGAGGTCCTTTCTGTGGATTCACTTAACCTCTTTCCGAGTTTAACAGATGTCAGGCTTTCTGATAATCCTGTAGCTGACCCTGCCAAGGGCGGCGTGCCTCGATTTGTGCTTATCGCCCGACTAGGAAAAGTTAAAATACTGAATGGTAGTGAGATAAGTCCACGTGAGCGAAGGGAAGCAGAGATACGATATGTTCGCCTTGTTATGGGAAAAGCTGAATCATATGATCCTGAAGAGATCNAACGGCTGCACCCTAGATT]

[+] EMBL AU030652             [AATAAGAACATGCTAAAACATGTAACATATCCATCCAATCCTCCTCCACTAGGATCTCTTGGCGATGCAGCTGTTTTGCCTTTTGAAAAACTACGAGTTCTTCTCTTAGGATCTAACCAGATAGATGAGGTCCTTTCTGTGGATTCACTTAACCTCTTTCCGAGTTTAACAGATGTCAGGCTTTCTGATAATCCTGTAGCTGACCCTGCCAAGGGCGGCGTGCCTCGATTTGTGCTTATCGCCCGACTAGGAAAAGTTAAAATACTGAATGGTAGTGAGATAAGTCCACGTGAGCGAAGGGAAGCAGAGATACGATATGTTCGCCTTGTTATGGGAAAAGCTGAATCATATGATCCTGAAGAGATCNAACGGCTGCACCCTAGATT]




>consensus_11731#3
AATAAGAACATGCTAAAACATGTAACATATCCATCCAATCCTCCTCCACTAGGATCTCTT
GGCGATGCAGCTGTTTTGCCTTTTGAAAAACTACGAGTTCTTCTCTTAGGATCTAACCAG
ATAGATGAGGTCCTTTCTGTGGATTCACTTAACCTCTTTCCGAGTTTAACAGATGTCAGG
CTTTCTGATAATCCTGTAGCTGACCCTGCCAAGGGCGGCGTGCCTCGATTTGTGCTTATC
GCCCGACTAGGAAAAGTTAAAATACTGAATGGTAGTGAGATAAGTCCACGTGAGCGAAGG
GAAGCAGAGATACGATATGTTCGCCTTGTTATGGGAAAAGCTGAATCATATGATCCTGAA
GAGATCNAACGGCTGCACCCTAGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11731#0      GTAGTAGTAGTAGGAGACGACATCCATGGCCGCCGTCGCCTTCCGCTTGGGACAGCGCGT 60
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      ------------------------------------------------------------
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      GCACGCCGCCGGCGACCCCGCCCGCGTCGGCACCGTGCGTTACCTCGGCCCTGTCGACGG 120
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      ------------------------------------------------------------
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      CCACCCCGGAGACTGGCTGGGCGTCGACTGGGACGCCGGCGCCGGCGGCCGCCATGACGG 180
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      ------------------------------------------------------------
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      GTCGCTCGCCGGCCGCCGCTACTTCGTTGCCGCCGGGGAACGCTCCGCCTCCTTCGCGCG 240
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      ---------CTGCACCCTTTGTAAGGTTGTCCAATTTCCCTTCTTTACTTTTTGACACCA 51
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      CCCCACCGCGCTCAGCGCCGGGATCACGCTCCCCGACGCCATACGCAACCGCTACCGTGT 300
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      CATGACCATGATATAACCAAAGGATTTTTCACTACATATGCCATTATTTTGCTGCAAAGG 111
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      CGAGGAATTCACCAAGGAGGAACAAGATGAAATGTATGTCTTCTCATCAAGTCAGAAGCG 360
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      ACACATGTTGTTACTTAAATGATTTCACCACATGAGCTGTGACCTTACTAACTAGAAAAG 171
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      CGTGTCAGTGGAATTGGTTGGCAAGAACAAAGTTGAGGAAAAGCTGAAAAACCTCAATGA 420
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      CTCTACCTAGTCAATTCCAGCCTATAT--GATCTCAGTTATACCTGTTATTCAACAATTA 229
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      TC-TGACCAGTGCATCTGTAT-CCTACATGGGAGTAAGCTCAATTGGGCCAGGAGATGAA 478
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      GGATTATATGTCTATCTTGATGTTTACACGCGCTTCCAAATTTGTGTTGCTTGGCTTCAT 289
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      CTAAAGAATTTGGTT--CCAAATCTCAGACAGCTTGATTTAACTGGAAATCTTCTCTC-T 535
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      TTGCTAAATTTAACTTCCCTGGGACTAGGCTGGGACAGATACCTGATGATAGTGACGCAC 349
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      CAGTGGCAAGTATGTACCTCAAGAGACTAACATTATGGATATATTCTCTCTGTGTGAAGC 595
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      CAATTATTAATTGGATTATGCTTAGGCAATAACGATTTGTCAATGCAGATTTGCTGAGCT 409
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      TCTGGCATCACTGGAAATTCTTGATTTGACAAACAATACCATGGAGAATGACTTTACTGA 655
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      GAAAGCCTTTCATGGTATTGAGGATGAGAAGCCGAGTTCAAGGACTTCTGGTCCTCAAAA 469
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      CAGTT-CATCTGTCAAGAATATCCGTGTTTTGGTTCTC-AACTACTGTGGTGTAAC-ATG 712
consensus_11731#3      -----------------------AATAAGAACATGCTA-AAACA-TGTAACATATCCATC 35
consensus_11731#1      AAATGGCTTCTGGGCTTATAAGTAATAATGTTGAACTATAATTAAGGCAAGAGAGTTGTA 529
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      GGAACTGGTTGAAAAGATTAAAGTCTCATTTTCATGTCTCAGTGAAC----TCCATCTAA 768
consensus_11731#3      CAATCCTCCTCCA----CTAGGATCTCTTGGCGATGCAGCTGT--------TTTGCCTTT 83
consensus_11731#1      TGGTATGCATGCGAGGAAGTGATTTTTTCTTTTCCTCCGTTGCACACAGGTATCACCTTG 589
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      TGACGAACAGGATAAAAGCAATGATGGATCTAACCA--GATAGATGAGGTCCTTTCTGTG 826
consensus_11731#3      TGAAAAACTACGAGTTCTTCTCTTAGGATCTAACCA--GATAGATGAGGTCCTTTCTGTG 141
consensus_11731#1      AAATGCGTAGGGCCATCTATGGGTGAGAAGCAACCATTGACAAAGAAGCTGCCTCCTGCA 649
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      GATTCACTTAACCTCTTTCCGAGTTTAACAGATGTCAGGCTTTCTGATAATCCTGTAGCT 886
consensus_11731#3      GATTCACTTAACCTCTTTCCGAGTTTAACAGATGTCAGGCTTTCTGATAATCCTGTAGCT 201
consensus_11731#1      ACTACTGTAAGTACTTCTTGGGTCCTATTACTACTTATTAGCTGTCCTTTTTTCGTGGTT 709
consensus_11731#2      ------------------------------------------------------------
                                                                                   

consensus_11731#0      GACCCTGCCAAGGGCGGCGTGCCTCGATTTGTGCTTATCGCCCGAC-TAGGAAAAGTT-- 943
consensus_11731#3      GACCCTGCCAAGGGCGGCGTGCCTCGATTTGTGCTTATCGCCCGAC-TAGGAAAAGTT-- 258
consensus_11731#1      GAGTCT-TTGAGACCAGCAGATAGAGAAAAACGATTCTCTTTTTTCGTATGCACACTTTC 768
consensus_11731#2      ---------------------------TTTTTTTTTTTTTCCTTTCTCGACAACATTTTA 33
                                                         ** *       *      * * **  

consensus_11731#0      -AAAATACTGAATGGTAGTGAGATAAGTCCACGTGAGCGA-AGGGAAGCAGAGATACGAT 1001
consensus_11731#3      -AAAATACTGAATGGTAGTGAGATAAGTCCACGTGAGCGA-AGGGAAGCAGAGATACGAT 316
consensus_11731#1      CGAGCTGCTAAACGGT-GTGTGCTTTACAAAAATTATTTATAGAAAAGTTGCTTTAAAAA 827
consensus_11731#2      ATACATGAGCAATGAT--CATACACAGCACAAATAATCCA---TACCTCTTCCTCAAGAT 88
                         *  *    ** * *              *  * *   *               *  * 

consensus_11731#0      ATGTTCGCCTTGTTA--TGGGAAAAGCTGAATCATATGATCCTGAAGAGATCAAACGGCT 1059
consensus_11731#3      ATGTTCGCCTTGTTA--TGGGAAAAGCTGAATCATATGATCCTGAAGAGATCNAACGGCT 374
consensus_11731#1      ATCATATTAATCAAT--TTTTCAAGTTTGAAATAATTAATACTCAATTAATCATGTGTTA 885
consensus_11731#2      ACAGTCTCAGTTTAACGTCTTTCAGTTTAAAGAAGCTCTCGCACAA-AGATTTTAACTTT 147
                       *   *     *      *     *   * **  *  *    *  **   **         

consensus_11731#0      GCACCCTA----GATTTGCTGAGCTGAAAGCCTTTCATGGTATTGAGGATGAGAAGCCGA 1115
consensus_11731#3      GCACCCTA----GATT-------------------------------------------- 386
consensus_11731#1      ATGACTCACCTCGTTTGGTGTATCTTTTCAATCTTCTCCTTTCCTTTCCTCTCAAACACA 945
consensus_11731#2      CCAACCTAT---AACATGCAAATCATAGGCAATTTAGCCGT------CGTAGCAAA-ACA 197
                           *  *                                                    

consensus_11731#0      GTTCAAGGACTTCTGGTCCTCAAAAAATGGCTTCTGGGCTTATAAGTATCACCTTGAAAT 1175
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      GGTTGGTTATGTTTAGCTTTCACATGCGAGATATTAGTGGCAACTTGCTGATAGTGATAT 1005
consensus_11731#2      GGA-GAGCATGTTATATCACTATCAGCAAGTTGCCACTAATATCTCGCATGTGAAAGCTA 256
                                                                                   

consensus_11731#0      GCGTAGGGCCATCTATGGGTGAGAAGCAACCATTGACAAAGAAGCTGCCTCCTGCAACTA 1235
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      AACATGCTCTCCTGTTTTGCTACGACGGCTAAATTGCCTATGATTTGCATGTTATAG--- 1062
consensus_11731#2      AACATAACCAACCTGTGT-TTGAGAGGAAAGGAAAGGAGAAAATTGAAAAGATACAC--- 312
                                                                                   

consensus_11731#0      CTGTTGGAAAGTTAAAATCTTTGTGCGAGAGCTTCTTTAAACTGAAGGACGTTAAACTGA 1295
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      --GTTGGAAAGTTAAAATCTTTGTGCGAGAGCTTCTTTAAACTGAAGGACGTTAAACTGA 1120
consensus_11731#2      ---CAAACGAGGTGAGTCATTAACACATGA-TTAATTGAGTATTAATTATTTCAAACTTG 368
                                                                                   

consensus_11731#0      GACTGTATCTTGAGGAAGAGGGTTGCCCTATGCCGCAATTCTTCGAGGAAGACACGGTTT 1355
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      GACTGTATCTTGAGGAAGAGGGTTGCCCTATGCCGCAATTCTTCGAGGAAGACACGGTTT 1180
consensus_11731#2      AA----AAATTGATTAATATGATT---TTTTAAAGCAACTTTTCTATAAATA----ATTT 417
                                                                                   

consensus_11731#0      CTCTCATGGAGCTTGGGATCGGCACGGGATCGACCATTATCGTGGACGAAGAAAGCTAGC 1415
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      CTCTCATGGAGCTTGGGATCGGCACGGGATCGACCATTATCGTGGACGAAGAAAGCTAGC 1240
consensus_11731#2      TTGTAAAGCACACACCGTTTAGCA---GCTCGAAAAGTGT-GCATACAAAAAAAGAGAAT 473
                                                                                   

consensus_11731#0      CTAATCTAGTTTACTGGCATTCTTTGTGTGCGTTTTAATTTGATTTATTTGAGTAAATTT 1475
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      CTAATCTAGTTTACTGGCATTCTTTGTGTGCGTTTTAATTTGATTTATTTGAGTAAATTT 1300
consensus_11731#2      CGTTTTTCTCTATCTGCTGGTCTCAAAG---ACTCAACCACGAAAAA----AGGACAGCT 526
                                                                                   

consensus_11731#0      GGTGTGTTGAGCTGGAGAAAACAAAGTCCCTGTAACATGGTACAAATGCTCAAGTAACTT 1535
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      GGTGTGTTGAGCTGGAGAAAACAAAGTCCCTGTAACATGGTACAAATGCTCAAGTAACTT 1360
consensus_11731#2      AATAAGTAGTAATAGGACCCAGGAAGTACTTACAGTA-GTTGCAGGAGG-CAGCTTCTTT 584
                                                                                   

consensus_11731#0      ACACTCGGCAGCTTAACGCCATCAAATGTGTGTGCATGTACGTGCTCTCGAGTCTCGACT 1595
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      ACACTCGGCAGCTTAACGCCATCAAATGTGTGTGCATGTACGTGCTCTCGAGTCTCGACT 1420
consensus_11731#2      GTCAATGGGTGCTTCTCACCCATAGATGGCCCTACGCA-------TTTCAAGGTGATACC 637
                                                                                   

consensus_11731#0      CGACCACATTATGAGTCATGACAGAAAGACAATCATTCTTGCTGTTTAGTACAATTTGAG 1655
consensus_11731#3      ------------------------------------------------------------
consensus_11731#1      CGACCACATTATGAGGCATGACAGAAAGACAATCATTCTTGCTGTTTCCTAAAAGGA--- 1477
consensus_11731#2      TGTGTGCA--ACGGAGGA-AAAGGAAAAATCACTTCCTCGGATGCATACCATACAA---- 690
                                                                                   

consensus_11731#0      CATAATGGCTGGTTATAGCAACTTATCCCCCCNTTTATCTTNTTTAA 1702
consensus_11731#3      -----------------------------------------------
consensus_11731#1      -----------------------------------------------
consensus_11731#2      -----------------------------------------------