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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1140 fasta sequence
[AAAGCATTCAGTGCTCTTCTCTCTCTCCTTCTCCTTCACTTTCTCTCTCCTCTTCTTCATGCTCGGATTTCCCTCTCTCGCGCATCGATCCGTCGCCTCGGCGCACAATTCGGGCTCGGAATCGGGTCCCTGATCCGCGACACCGCCCGGCTCGATCGTTTCCCGGGCTGATTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGAGAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGTTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGAGCTCTCGGTGCTTCCTCGGCACACGAAGGTCATCGTCACTGGGAACAACCGAACAAAGTCCGTCTTGGTTGGCCTACAAGGTGTTGTCAAGAAGGCTGTTGGTCTTGGAGGTTGGCACTGGCTGGTTCTAAAGAATGGTGTAGAGGTGAAGCTGCAAAGGAATGCTTTGAGTGTATTGGAACCTCCAACTGGTAACGAAGACGATGATGATATTGATGGCAACAATTCGTTCTGTAGCAGTTCCGACATGGGAGACAAAGACATGGACTATT---CGAGCATAGAGTACCACAAACCAACAAAGCCAAGAGTTCGGCATACAAGGCCCTGGTCTTCCTGTATAAAATCCAGCAACCGAGGCAATTTTCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAAAACTTGGAACTCCTACGCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCAATCCATCAAAGGAACAGCTCTTCCATGGGGTCCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGACCAATCTCAATTATTGGATGGAGATAAAATACTAGTGCTAAAAAAAAAAAAA]
[+] EMBL AK102406 [AAAGCATTCAGTGCTCTTCTCTCTCTCCTTCTCCTTCACTTTCTCTCTCCTCTTCTTCATGCTCGGATTTCCCTCTCTCGCGCATCGATCCGTCGCCTCGGCGCACAATTCGGGCTCGGAATCGGGTCCCTGATCCGCGACACCGCCCGGCTCGATCGTTTCCCGGGCTGATTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGAGAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGTTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGAGCTCTCGGTGCTTCCTCGGCACACGAAGGTCATCGTCACTGGGAACAACCGAACAAAGTCCGTCTTGGTTGGCCTACAAGGTGTTGTCAAGAAGGCTGTTGGTCTTGGAGGTTGGCACTGGCTGGTTCTAAAGAATGGTGTAGAGGTGAAGCTGCAAAGGAATGCTTTGAGTGTATTGGAACCTCCAACTGGTAACGAAGACGATGATGATATTGATGGCAACAATTCGTTCTGTAGCAGTTCCGACATGGGAGACAAAGACATGGACTATT CGAGCATAGAGTACCACAAACCAACAAAGCCAAGAGTTCGGCATACAAGGCCCTGGTCTTCCTGTATAAAATCCAGCAACCGAGGCAATTTTCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAAAACTTGGAACTCCTACGCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCAATCCATCAAAGGAACAGCTCTTCCATGGGGTCCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGACCAATCTCAATTA ]
[+] EMBL OSR14962A [ TCTCTCCTTCTCCTTCACTTTCTCTCTCCTCTTCTTCATGCTCGGATTTCCCTCTCTCGCGCATCGATCCGTCGCCTCGGCGCACAATTCGGGCTCGGAATCGGGTCCCTGATCCGCGACACCGCCCGGCTCGATCGTTTCCCGGGCTGATTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGAGAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGTTCTGTCTCCG ]
[+] EMBL AU225188 [ TTCGGGCTCGGAATCGGGTCCCTGATCCGCGACACCGCCCGGCTCGATCGTTTCCCGGGCTGATTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGAGAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGTTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGAGCTCTCGGTGCTTCCTCGGCACACGAAGGTCATCGTCACTGGGAACAACCGAACAAAGTCCGTCTTGGTTGGCCTACAAGGTGTTGTCAAGAAGGCTGTTGGTCTTGGAGGTTGGCACTGGCTGGTTCTAAAGAATGGTGTAGAGGTGAAGCTGCAAAGGAATGCTTT ]
[+] EMBL CF304994 [ TTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGAGAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGTTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGAGCTCTCGGTGCTTCCTCGGCACACGAAGGTCATCGTCACTGGGAACAACCGAACAAAGTCCGTCTTGGTTGGCCTACAAGGTGTTGTCAAGAAGGCTGTTGGTCTTGGAGGTTGGCACTGGCTGGTTCTAAAGAATGGTGTAGAGGTGAAGCTGCAAAGGAATGCTTTGAGTGTATTGGAACCTCCAACTGGTAACGAAGACGATGATGATATTGATGGCAACAATTCGTTCTGTAGCAGTTCCGACATGGGAGACAAAGACATGGACTATT CGAGCATAGAGTACCACAAACCAACAAAGCCAAGAGTTCGGCATACAAGGCCCT ]
[-] EMBL CA762525 [ AAACTGCAAAGGAATGCTTTGAGTG AATGGACCCTCC ACTGGTACCGAAGCCGATGATGATATTGATGGCAACAATTCTTTCTGTAGCAGTTCCGACATGGGAGACAAAGACATGGACTATTTAGCGAGCATAGAGTCCCNCAAACCACCAAAGCCAAGAGTTCGGCATACAAGGCCCTGGTCTTCCTGTATAAAATCCAGCAACCGAGGCAATTTTCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAAAACTTGGAACTCCTACGCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCAATCCATCAAAGGAACAGCTCTTCCATGGGGTCCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGT ATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCATGTTCGCACAGTGTCAGCAACTGACCAATCTCAATTATTGGATGGAGATAAAATACTAGTGCTAAAAAAAAAAAAA]
[+] EMBL AU095455 [ atcCAAAGGAACAGCTCTTCCATGGGGTCCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGACCAATCTCAATTATTGGATGGAGATAAAATACTAGTGCTAAAAAAAAAA ]
consensusID : consensus_11761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence
[TTCCCCCTCCCCCCAAACCCAAGAGTTTCGGCATACAAGGCCCTGTCTTCCGGTATGAAAATCCAGCAACCGAGCATTTTCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAAACTTGGAACTCCTACCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCATCCATCAAAGGAACAGCTCTT-CCAT-GGGGTCCAGCAGCATTTTCAGTCTCAGC-ATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGACCATCTCAATTATTGGATGGAGATAAAATACTAGTG-CTA-GTACAGTGTGAAGCTATGATGAATTATTGGTCAA-CTTGATGCAAAAAATTTCTATCCAAAAAAAAAA]
[+] EMBL BI798825 [TTCCCCCTCCCCCCAAACCCAAGAGTTTCGGCATACAAGGCCCTGTCTTCCGGTATGAAAATCCAGCAACCGAGCATTTTCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAAACTTGGAACTCCTACCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCATCCATCAAAGGAACAGCTCTT CCAT GGGGTCCAGCAGCATTTTCAGTCTCAGC ATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGACCATCTCAATTATTGGATGGAGATAAAATACTAGTG CTA GTACAGTGTGAAGCTATGATGAATTATTGGTCAA CTTGATGCAAAAAA ]
[+] EMBL BI804846 [ TCTTCCCATGGGGGTCCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTT CAGGTGATTCTGGGCTTCATCCA GCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGACCATCTCAATTATTGGATGGAGATAAAATACTAGTGCCTAGGTACAGTGTGAAGCTATGATGAATTATTGGTCAACCTTGATGAAATGACTTTCTATCCAAAAAAAAAA]
consensusID : consensus_11761#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[NCGAGGCGGCCGCTCGAACCTCTAGAACCTTTCTCTCTCCTCTTCTTCATGCTCGGATTTCCCTCTCTCGCGCATCGATCCGTCGCCTCGGCGCACAATTCGGGCTCGGAATCGGGTCCCTGATCCGCGACACCGCCCGGCTCGATCGTTTCCCGGGCTGATTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGANAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGNTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGANCTCTCGGTGCTTCCTCGGCACACGAAGGTCATCGTCACTGGGAACAACCGAACAAAGTCCGTCTTGGTTGGCCTACAAAGTGTTGTCAAGAAAGCTGTTGGTCTTGGAGGTTGGCACTGGCTGGTTCTAAAGAATGGTGTAGACGTGAAGCTT]
[+] EMBL C73007 [NCGAGGCGGCCGCTCGAACCTCTAGAACCTTTCTCTCTCCTCTTCTTCATGCTCGGATTTCCCTCTCTCGCGCATCGATCCGTCGCCTCGGCGCACAATTCGGGCTCGGAATCGGGTCCCTGATCCGCGACACCGCCCGGCTCGATCGTTTCCCGGGCTGATTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGANAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGNTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGANCTCTCGGTGCTTCCTCGGCACACGAAGGTCATCGTCACTGGGAACAACCGAACAAAGTCCGTCTTGGTTGGCCTACAAAGTGTTGTCAAGAAAGCTGTTGGTCTTGGAGGTTGGCACTGGCTGGTTCTAAAGAATGGTGTAGACGTGAAGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11761#0 ------------------------------------------------------------
consensus_11761#2 ------------------------------------------------------------
consensus_11761#1 TTCCCCCTCCCCCCAAACCCAAGAGTTTCGGCATACAAGGCCCTGTCTTCCGGTATGAAA 60
consensus_11761#0 -----------------AAAGCATTCAGTGCTCTTCTCTCTCT-----CCTTCTCCTTCA 38
consensus_11761#2 -----------------------------NCGAGGCGGCCGCT-----CGAACCTCTAGA 26
consensus_11761#1 ATCCAGCAACCGAGCATTTTCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAA 120
* * * *
consensus_11761#0 --CTTTCTCTCTCCTCT-TCTTCATGCTCGGA---TTTCCCTCTCTCGCGCATCGATCCG 92
consensus_11761#2 ACCTTTCTCTCTCCTCT-TCTTCATGCTCGGA---TTTCCCTCTCTCGCGCATCGATCCG 82
consensus_11761#1 ACTTGGAACTCCTACCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCC 180
* *** ** * ** ** * * **** *** **** * **
consensus_11761#0 TCGCCTCGGCGCA-CAATTCGGGCTCGGAATCGGGT----CCCTGATCCGCGACACCGCC 147
consensus_11761#2 TCGCCTCGGCGCA-CAATTCGGGCTCGGAATCGGGT----CCCTGATCCGCGACACCGCC 137
consensus_11761#1 ATCCATCAAAGGAACAGCTCTTCCATGGGGTCCAGCAGCATTTTCAGTCTCAGCATTGGA 240
* ** * * ** ** * ** ** * * * * * ** *
consensus_11761#0 CGGCTCGATCGT--TTCCCGGGCTGATTCGGTGGCCATTGCGGC--GAGATC--GGAGCA 201
consensus_11761#2 CGGCTCGATCGT--TTCCCGGGCTGATTCGGTGGCCATTGCGGC--GAGATC--GGAGCA 191
consensus_11761#1 TGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCG 300
* * * ** *** ** * ** * * ** * *** *** * * * *
consensus_11761#0 GGGAGAGATCAGGGCAGAGAA--TCAGCATGATGAT---GGAGACTGAGCTATGCTCCTC 256
consensus_11761#2 GGGANAGATCAGGGCAGAGAA--TCAGCATGATGAT---GGAGACTGAGCTATGCTCCTC 246
consensus_11761#1 CTCCTAGCCTGCTTCACAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCT 360
** ** * * **** ** *** * * ** * * * *
consensus_11761#0 CCGGGTTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGAGCTCTCGGTGCTTCCTCG 316
consensus_11761#2 CCGGGNTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGANCTCTCGGTGCTTCCTCG 306
consensus_11761#1 ATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGT 420
* * * * ** * ***** * ** ** * *
consensus_11761#0 GCACACGAAG-GTCATCGTCACTGGGAACAACCG--AACAAAGTCCGTCTTGGTT--GGC 371
consensus_11761#2 GCACACGAAG-GTCATCGTCACTGGGAACAACCG--AACAAAGTCCGTCTTGGTT--GGC 361
consensus_11761#1 GCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGT 480
*** ** * ** ** * * *** ** *** * * *
consensus_11761#0 CTACAAGGTGTTGTCAAGAAGGC-TGTTGGTC-TTGGAGGTTGGCACTG-GCTGGTTCTA 428
consensus_11761#2 CTACAAAGTGTTGTCAAGAAAGC-TGTTGGTC-TTGGAGGTTGGCACTG-GCTGGTTCTA 418
consensus_11761#1 TCACACAGTGTCAGCAACTGACCATCTCAATTATTGGATGGAGATAAAATACTAGTGCTA 540
*** **** *** * * * * ***** * * * ** ** ***
consensus_11761#0 AAGAATGGTGTAGAGGTGAAGCTGCAAAGGAATGCTTTGAGTGTATTGGAACCTCCAACT 488
consensus_11761#2 AAGAATGGTGTAGACGTGAAGCTT------------------------------------ 442
consensus_11761#1 GTACAGTGTGAAGCTATGATGAATTATTGGTCAACTTGATGCAAAAAATTTCTATCCAAA 600
* *** ** *** *
consensus_11761#0 GGTAACGAAGACGATGATGATATTGATGGCAACAATTCGTTCTGTAGCAGTTCCGACATG 548
consensus_11761#2 ------------------------------------------------------------
consensus_11761#1 AAAAAAA----------------------------------------------------- 607
consensus_11761#0 GGAGACAAAGACATGGACTATTCGAGCATAGAGTACCACAAACCAACAAAGCCAAGAGTT 608
consensus_11761#2 ------------------------------------------------------------
consensus_11761#1 ------------------------------------------------------------
consensus_11761#0 CGGCATACAAGGCCCTGGTCTTCCTGTATAAAATCCAGCAACCGAGGCAATTTTCACCCC 668
consensus_11761#2 ------------------------------------------------------------
consensus_11761#1 ------------------------------------------------------------
consensus_11761#0 AGTACAAAGCTGCGAACGAGAGTAAACCTGACAAAACTTGGAACTCCTACGCTGTGGAGA 728
consensus_11761#2 ------------------------------------------------------------
consensus_11761#1 ------------------------------------------------------------
consensus_11761#0 TACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCAATCCATCAAAGGAACAGCTCTTC 788
consensus_11761#2 ------------------------------------------------------------
consensus_11761#1 ------------------------------------------------------------
consensus_11761#0 CATGGGGTCCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTTGCAGGTGATTCTGGGC 848
consensus_11761#2 ------------------------------------------------------------
consensus_11761#1 ------------------------------------------------------------
consensus_11761#0 TTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAAAC 908
consensus_11761#2 ------------------------------------------------------------
consensus_11761#1 ------------------------------------------------------------
consensus_11761#0 CCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAG 968
consensus_11761#2 ------------------------------------------------------------
consensus_11761#1 ------------------------------------------------------------
consensus_11761#0 TCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTT 1028
consensus_11761#2 ------------------------------------------------------------
consensus_11761#1 ------------------------------------------------------------
consensus_11761#0 TTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGA 1088
consensus_11761#2 ------------------------------------------------------------
consensus_11761#1 ------------------------------------------------------------
consensus_11761#0 CCAATCTCAATTATTGGATGGAGATAAAATACTAGTGCTAAAAAAAAAAAAA 1140
consensus_11761#2 ----------------------------------------------------
consensus_11761#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||