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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1500 fasta sequence
[CTTATCTGTTGCCACATGGCCACACCAAGTCCAAACCCTCACCTCTCCATGTCCATCAATGGAGGAGCCACCGTTTCGGCTGGTTGGGCGGCCACCCAACCTCGCCGGCGACGAACAGTGGATCACAGTAGCAGAAGCTGCTTACTTCGACCATCATATGGATCTACCAGAGGCTTCGGTACGAGGAGAATTGCAGTTCGTTCTGCCTCCCAGAAGAACTCGTCTCCTCCATTGATGACCACTGAGCAAGAAGCCGAAGACGAGGTGGTGCTAGAGTCGCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATCGACCGCCTCAACCGGCCACCCGTCCTGCCCGCTGGTCTCGACGAGGCCACCGGCGTCACCTCCAAGGACGTCGTCCTCGACGCCGACACCGGCGTCTCCGTCCGCCTCTTCCTCCCCAAGCTTCAGGAGCCCTCCAAGAAGCTCCCCGTCGTCGTCTTCTTCCACGGCGGCGCGTTCTTCATCGAGTCGGCCGGCTCCGAGACGTACCACAACTACGTCAACTCCCTCGCCGCGGCGGCCGGTGTCCTCGTCGTGTCCGTCGACTACCGGCTCGCCCCGGAGCACCCGCTCCCCGCGGGCTACGACGACTCGTGGGCGGCGCTCCAGTGGGCGGCCTCGGCGCAAGACGGATGGATCGCCGAGCACGGCGACACGGCTCGCCTCTTCGTCGCCGGCGACAGCGCCGGCGCCAACATCGCGCACGAGATGCTCGTGAGGGCGGCCGCCAGCGGCGGGCGCCCGAGGATGGAGGGCGCGATCCTGCTGCACCCGTGGTTCGGCGGGAGCAAGGAGATCGAGGGGGAGCCGGAGGGCGGCGCCGCGATCACCGCGGCGATGTGGAACTACGCGTGCCCGGGCGCCGCCGCCGGCGCGGACGACCCGCGGCTGAACCCGCTGGCGGCCGGCGGGCCGGTGCTGGAGGAGCTCGCGTGCGAGAGGATGCTCGTGTGCGCGGGGGGGAAGGACGTGCTCGCGGCGAGGAACCGCGCGTACTACGACGCCGTGGCGGCGAGCGCGTGGCGCGGGAGCGCGGCGTGGCTCGAGTCGGAGGGGGAGGGGCACGTGTTCTTCCTGGGGAATTCGGAGTGCGAGAATGCCAAGCAGCTCATGGATCGCATCGTGGCGTTCATAGCCGGTGGATGAGCTGCTTGGATCGTATATAAGTCAACATTGAAGTTGAATCGAGTTATTTGTTTCACTCATCATTCACTGGGTTGAAATCGAATCGAAGTAAATAGTGTACAAACACTACTAAGCTTTCGAAGGTGAAACTGAAATTGATTGCGTGCCACAAAATTGTGATGTATTTGTAATAGTACATCCCTAGAAGGGTCATCGATAGATTTTTTTTTCTTGCATAATCAAAAGTGGCAACTATTACCTTACAATGAACCATCGCATGGACTAGGGAACATAAGGGTATGTTAAATGATAGAGACGAGTATGGTCTCTTAGACAATACAA]
[+] EMBL AK071569 [CTTATCTGTTGCCACATGGCCACACCAAGTCCAAACCCTCACCTCTCCATGTCCATCAATGGAGGAGCCACCGTTTCGGCTGGTTGGGCGGCCACCCAACCTCGCCGGCGACGAACAGTGGATCACAGTAGCAGAAGCTGCTTACTTCGACCATCATATGGATCTACCAGAGGCTTCGGTACGAGGAGAATTGCAGTTCGTTCTGCCTCCCAGAAGAACTCGTCTCCTCCATTGATGACCACTGAGCAAGAAGCCGAAGACGAGGTGGTGCTAGAGTCGCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATCGACCGCCTCAACCGGCCACCCGTCCTGCCCGCTGGTCTCGACGAGGCCACCGGCGTCACCTCCAAGGACGTCGTCCTCGACGCCGACACCGGCGTCTCCGTCCGCCTCTTCCTCCCCAAGCTTCAGGAGCCCTCCAAGAAGCTCCCCGTCGTCGTCTTCTTCCACGGCGGCGCGTTCTTCATCGAGTCGGCCGGCTCCGAGACGTACCACAACTACGTCAACTCCCTCGCCGCGGCGGCCGGTGTCCTCGTCGTGTCCGTCGACTACCGGCTCGCCCCGGAGCACCCGCTCCCCGCGGGCTACGACGACTCGTGGGCGGCGCTCCAGTGGGCGGCCTCGGCGCAAGACGGATGGATCGCCGAGCACGGCGACACGGCTCGCCTCTTCGTCGCCGGCGACAGCGCCGGCGCCAACATCGCGCACGAGATGCTCGTGAGGGCGGCCGCCAGCGGCGGGCGCCCGAGGATGGAGGGCGCGATCCTGCTGCACCCGTGGTTCGGCGGGAGCAAGGAGATCGAGGGGGAGCCGGAGGGCGGCGCCGCGATCACCGCGGCGATGTGGAACTACGCGTGCCCGGGCGCCGCCGCCGGCGCGGACGACCCGCGGCTGAACCCGCTGGCGGCCGGCGGGCCGGTGCTGGAGGAGCTCGCGTGCGAGAGGATGCTCGTGTGCGCGGGGGGGAAGGACGTGCTCGCGGCGAGGAACCGCGCGTACTACGACGCCGTGGCGGCGAGCGCGTGGCGCGGGAGCGCGGCGTGGCTCGAGTCGGAGGGGGAGGGGCACGTGTTCTTCCTGGGGAATTCGGAGTGCGAGAATGCCAAGCAGCTCATGGATCGCATCGTGGCGTTCATAGCCGGTGGATGAGCTGCTTGGATCGTATATAAGTCAACATTGAAGTTGAATCGAGTTATTTGTTTCACTCATCATTCACTGGGTTGAAATCGAATCGAAGTAAATAGTGTACAAACACTACTAAGCTTTCGAAGGTGAAACTGAAATTGATTGCGTGCCACAAAATTGTGATGTATTTGTAATAGTACATCCCTAGAAGGGTCATCGATAGATTTTTTTTTCTTGCATAATCAAAAGTGGCAACTATTACCTTACAATGAACCATCGCATGGACTAGGGAACATAAGGGTATGTTAAATGATAGAGACGAGTATGGTCTCTTAGACAATACAA]
[+] EMBL AK070294 [ ATCTGTTGCCACATGGCCACACCAAGTCCAAACCCTCACCTCTCCATGTCCATCAATGGAGGAGCCACCGTTTCGGCTGGTTGGGCGGCCACCCAACCTCGCCGGCGACGAACAGTGGATCACAGTAGCAGAAGCTGCTTACTTCGACCATCATATGGATCTACCAGAGGCTTCGGTACGAGGAGAATTGCAGTTCGTTCTGCCTCCCAGAAGAACTCGTCTCCTCCATTGATGACCACTGAGCAAGAAGCCGAAGACGAGGTGGTGCTAGAGTCGCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATCGACCGCCTCAACCGGCCACCCGTCCTGCCCGCTGGTCTCGACGAGGCCACCGGCGTCACCTCCAAGGACGTCGTCCTCGACGCCGACACCGGCGTCTCCGTCCGCCTCTTCCTCCCCAAGCTTCAGGAGCCCTCCAAGAAGCTCCCCGTCGTCGTCTTCTTCCACGGCGGCGCGTTCTTCATCGAGTCGGCCGGCTCCGAGACGTACCACAACTACGTCAACTCCCTCGCCGCGGCGGCCGGTGTCCTCGTCGTGTCCGTCGACTACCGGCTCGCCCCGGAGCACCCGCTCCCCGCGGGCTACGACGACTCGTGGGCGGCGCTCCAGTGGGCGGCCTCGGCGCAAGACGGATGGATCGCCGAGCACGGCGACACGGCTCGCCTCTTCGTCACCGGCGACAGCGCCGGCGCCAACATCGCGCACGAGATGCTCGTGAGGGCGGCCGCCAGCGGCGGGCGCCCGAGGATGGAGGGCGCGATCCTGCTGCACCCGTGGTTCGGCGGGAGCAAGGAGATCGAGGGGGAGCCGGAGGGCGGCGCCGCGATCACCGCGGCGATGTGGAACTACGCGTGCCCGGGCGCCGCCGCCGGCGCGGACGACCCGCGGCTGAACCCGCTGGCGGCCGGCGGGCCGGTGCTGGAGGAGCTCGCGTGCGAGAGGATGCTCGTGTGCGCGGGGGGGAAGGACGTGCTCGCGGCGAGGAACCGCGCGTACTACGACGCCGTGGCGGCGAGCGCGTGGCGCGGGAGCGCGGCGTGGCTCGAGTCGGAGGGGGAGGGGCACGTGTTCTTCCTGGGGAATTCGGAGTGCGAGAATGCCAAGCAGCTCATGGATCGCATCGTGGCGTTCATAGCCGGTGGATGAGCTGCTTGGATCGTATATAAGTCAACATTGAAGTTGAATCGAGTTATTTG TTCACTCATCATTCACTGGGTTGAAATCGAATCGAAGTAAATAGTGTACAAACACTACTAAGCTTTCGAAGGTGAAACTGAAATTGAT ]
consensusID : consensus_11764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1244 fasta sequence
[TAAACTTCATTTGATTTTTTTCTAAAAAAATCAAAGACAAGATCCAAGGACGAAAAAGGACGTGCGGCAGACGCTCTCCCTCCCAGGTCCCAGCCAGGGGTTTATTAGCTGATTCAAGACGTACCTTATCATCTCTCCATTCGCCATCGAGCCCGCCGGAGGCCAAAACGCCTTCTGCGGCAGCATCCACCAATTCGCCATGGCCTCCGAGACCGAGCCCGACGCCGTGGTGTTCGAGGCTCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATGGACCGCCTTCACCGACCACCCTGCCTGCCCGCTGGCGTCGACGAGGCCACCGGCGTCGCCTCCAAGGACGTCGTCATCGACGCCGGCACCGGCCTCTCCGTGCGCCTCTACCTCCCCAAGATCCAAGAGCCATCCAAGAAGCTCCCCGTCCTCGTCTTCTTCCACGGAGGCGGCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAACTACGTCAACCCCTTCGCCGCCGCGGCCGGCGTCGTCGTGGTGTCCGTCGACTACCGCCTCGCCCCGGAGCACCCGCTGCCGGCGGCCTACGACGATTCCTGGGCCGGGCTACTGTGGGCGGCGTCAGCGCAAGATGGCTGGCTCGCGGAGCACGGCGACGTGTCCCGACTGTTCATCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACATGCTCCTGAGGGCGGCCTCCAACGGCGGGCCGAGGATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGGCGGGAGCACGGTTCTCGAGGGGGAGCCCCCGGCCGCGGCCGCGCTCACCGGTATGATATGGTGCTACGCGTGCCCCGGCGCGTCCGGCGGCGCGGACGACCCGAGGATGAACCCGCTTGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGCGTGCGAGAGGATGCTGGTGGCGGCGGGGCAGACCGACGGGCTGGCGGCGAGGGACCGCGCGTACTACGACGCCGTGGCGGCGAGCCCCTGGCGCGGGACGGCGACGTGGGTGGAGTCGGAGGGGGAGGGGCACGTCTTCTTCCTGGAGAAGCCGGAGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGAGTTCATATCCGCCGGGTCTCCTGCCTGATTAAAAATTAGCTCCATCCGGATGCGCCCCGCGTTGAAGTCGTCGTAATGTATCGAACTTAGGGCTCGAATAATTTGGACTGATCATCCTTTCATGA]
[-] EMBL AK073449 [TAAACTTCATTTGATTTTTTTCTAAAAAAATCAAAGACAAGATCCAAGGACGAAAAAGGACGTGCGGCAGACGCTCTCCCTCCCAGGTCCCAGCCAGGGGTTTATTAGCTGATTCAAGACGTACCTTATCATCTCTCCATTCGCCATCGAGCCCGCCGGAGGCCAAAACGCCTTCTGCGGCAGCATCCACCAATTCGCCATGGCCTCCGAGACCGAGCCCGACGCCGTGGTGTTCGAGGCTCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATGGACCGCCTTCACCGACCACCCTGCCTGCCCGCTGGCGTCGACGAGGCCACCGGCGTCGCCTCCAAGGACGTCGTCATCGACGCCGGCACCGGCCTCTCCGTGCGCCTCTACCTCCCCAAGATCCAAGAGCCATCCAAGAAGCTCCCCGTCCTCGTCTTCTTCCACGGAGGCGGCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAACTACGTCAACCCCTTCGCCGCCGCGGCCGGCGTCGTCGTGGTGTCCGTCGACTACCGCCTCGCCCCGGAGCACCCGCTGCCGGCGGCCTACGACGATTCCTGGGCCGGGCTACTGTGGGCGGCGTCAGCGCAAGATGGCTGGCTCGCGGAGCACGGCGACGTGTCCCGACTGTTCATCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACATGCTCCTGAGGGCGGCCTCCAACGGCGGGCCGAGGATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGGCGGGAGCACGGTTCTCGAGGGGGAGCCCCCGGCCGCGGCCGCGCTCACCGGTATGATATGGTGCTACGCGTGCCCCGGCGCGTCCGGCGGCGCGGACGACCCGAGGATGAACCCGCTTGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGCGTGCGAGAGGATGCTGGTGGCGGCGGGGCAGACCGACGGGCTGGCGGCGAGGGACCGCGCGTACTACGACGCCGTGGCGGCGAGCCCCTGGCGCGGGACGGCGACGTGGGTGGAGTCGGAGGGGGAGGGGCACGTCTTCTTCCTGGAGAAGCCGGAGTGCGACAA ]
[+] EMBL AK067180 [ TCGAGCCCGCCGGAGGCCAAAACGCCTTCTGCGGCAGCATCCACCAATTCGCCATGGCCTCCGAGACCGAGCCCGACGCCGTGGTGTTCGAGGCTCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATGGACCGCCTTCACCGACCACCCTGCCTGCCCGCTGGCGTCGACGAGGCCACCGGCGTCGCCTCCAAGGACGTCGTCATCGACGCCGGCACCGGCCTCTCCGTGCGCCTCTACCTCCCCAAGATCCAAGAGCCATCCAAGAAGCTCCCCGTCCTCGTCTTCTTCCACGGAGGCGGCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAACTACGTCAACCCCTTCGCCGCCGCGGCCGGCGTCGTCGTGGTGTCCGTCGACTACCGCCTCGCCCCGGAGCACCCGCTGCCGGCGGCCTACGACGATTCCTGGGCCGGGCTACTGTGGGCGGCGTCAGCGCAAGATGGCTGGCTCGCGGAGCACGGCGACGTGTCCCGACTGTTCATCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACATGCTCCTGAGGGCGGCCTCCAACGGCGGGCCGAGGATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGGCGGGAGCACGGTTCTCGAGGGGGAGCCCCCGGCCGCGGCCGCGCTCACCGGTATGATATGGTGCTACGCGTGCCCCGGCGCGTCCGGCGGCGCGGACGACCCGAGGATGAACCCGCTTGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGCGTGCGAGAGGATGCTGGTGGCGGCGGGGCAGACCGACGGGCTGGCGGCGAGGGACCGCGCGTACTACGACGCCGTGGCGGCGAGCCCCTGGCGCGGGACGGCGACGTGGGTGGAGTCGGAGGGGGAGGGGCACGTCTTCTTCCTGGAGAAGCCGGAGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGAGTTCATATCCGCCGGGTCTCCTGCCTGATTAAAAATTAGCTCCATCCGGATGCGCCCCGCGTTGAAGTCGTCGTAATGTATCGAACTTAGGGCTCGAATAATTTGGACTGATCATCCTTTCATGA]
[+] EMBL CF569125 [ CCAAAACGCCTTCTGCGGCAGCATCCACCAATTCGCCATGGCCTCCGAGACCGAGCCCGACGCCGTGGTGTTCGAGGCTCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATGGACCGCCTTCACCGACCACCCTGCCTGCCCGCTGGCGTCGACGAGGCCACCGGCGTCGCCTCCAAGGACGTCGTCATCGACGCCGGCACCGGCCTCTCCGTGCGCCTCTACCTCCCCAAGATCCAAGAGCCATCCAAGAAGCTCCCCGTCCTCGTCTTCTTCCACGGAGGCGGCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAACTACGTCAACCCCTTCGCCGCCGCGGCCGGCGTCGTCGTGGTGTCCGTCGACTACCGCCTCGCCCCGGAGCACCCGCTGCCGGCGGCCTACGACGATTCCTGGGCCGGGCTACTGTGGGCGGCGTCAGCGCAAGATGGCTGGCTCGCGGAGCACGGCGACGTGTCCCGACTGTTCATCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACATGCTCCTGAGGGCGGCCTCCAACGGCGGGCCGAGGATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGGCGGGAGC CGGTTCTCGAGGGGGAGCCCCCGGCCG ]
[+] EMBL CB683116 [ ggccccttCGACTTCTGCGGCAGCATCCACCAATTCGCCATGGCCTCCGAGACCGAGCCCGACGCCGTGGTGTTCTACGCTCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATGGACCGCCTTCACCGACCACCCTGCCTGCCCGCTGGCGTCGACGAGGCCACCGGCGTCGCCTCCAAGGACGTCGTCATCGACGCCGGCACCGGCCTCTCCGTGCGCCTCTACCTCCCCAAGATCCAAGAGCCATCCAAGAAGCTCCCCGTCCTCGTCTTCTTCCACGGAGGCGGCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAACTACGTCAACCCCTTCGCCGCCGCGGCCGGCGTCGTCGTGGTGTCCGTCGACTACCGCCTCGCCCCGGAGCACCCGCTGCCGGCGGCCTACGACGATTCCTGGGCCGGGCTACTGTGGGCGGCGTCAGCGCAAGATGGCTGGCTCGCGGAGCACGGCGACGTGTCCCGACTGTTCATCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACATGCTCCTGAGGGCGGCCTCCAACGGCGGGCCGAGGATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGGCGGGAGCACGGTTCTCGAGGGGGAGCCCCCGGCCGCGGCCGCGCTCACCGGTATGATATGGTGCTACGCGTGCCCCGGCGCGTCCGGCGGCGCGGACGACCCGAGGATGAACCCGCTTGCGCCTGGCG ]
[+] EMBL BU673413 [ TGGTGCTACGCGTG CCCGGCGCGT CGGCGGCGCGGACGA CCGAGGATGAACCCGCTTGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGCGTGCGAGAGGATGCTGGTGGCGGCAGGGCAGACCGACGGGCTGGCGGCGAGGGACCGCGCGTACTACGACGCCGTGGCGGCGAGCCCCTGGCGCGGGACGGCGACATGGGTGGAGTCGGAGGGGGAGGGGCACGTCTTCTTCCTGGAGAAGCCGGAGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGAGTTCATATCCGCCGGGTCTCCTGCCTGATTAAAAATTAGCTCCATCCGGATGCGCCCCGCGTTGAAGTCGTCGTAATGTATCGAACTTATGGCTCGAATAATTTGGACTGA ]
consensusID : consensus_11764#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1040 fasta sequence
[AGTTGTGATAGCCATGGAACCCGACGCCGACGAGTTGGTGTTCGACAGCTCATACCTCCGCATCTACAAGAACGGCAAGGTAGACCGCCTCCACCGGCCCCCTCTCCTCGCCGCGGGCGTCGACGATGCCACCGGCGTCGTCTCCAAGGACGTCGTCCTCGACGCCGGGACAGGACTGTTCGTGCGCGTCTTCCTGCCCAAGGTGCAAGACCAAGAACTCGGCAAAAAGCTTCCTGTCCTCGTGTACTTCCACGGCGGCGGCTTCATCATTGAGTCCGCGGACTCAGCCACGTACCACAACTACCTCAACTCCGCCGCCGCCGCCGCCGGCGTCCTTGTGGTGTCCGTCGACTACCGCTTAGCCCCGGAGAACCCGCTCCCTGCAGGATATGATGATTCTTGGGCGGCGCTCCAGTGGGCGGTGTCCGCCCATGCGGACGACTGGATCACCGAGCACGGCGACACGGCGCGCGTCTTCGTCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACGTGCTCCTGAGGGCATCCTCGAACAAAGGACCGAGGATAGAGGGCGCGATCATGCTGCACCCGTTCTTCGGCGGGAGCACGGCCATCGACGGCGAGTCCGACGAGGCGGTCTACATAGCCTCGAAGGTGTGGCCGTTCGCGTGCCCGGGCGCAGTGAACGGCGTGGACGACCCGAGGATGAACCCGACGGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGGGTGCGAGCGGCTGCTCGTGTGCACGGCGCAGGAGGACTGGCTGGTGGCGAGGGGCCGCGCGTACTACGGCGCCGTGGCCGCGAGCGCGTGGCGCGGGAGCGCGGCGTGGCACGAGACGGAGGGAGAGGGGCACGTCTTCTTCCTTCGCGATCCGGGGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGCGTTCATAGCCAGCGCATGAACTTCTCTTCTTCATCTGTGTATGCTTGCGGACTTGCAGCTGTATCTTGCTTGCCTGAGATTAATAAATCAATAAAATGTTATATATT]
[+] EMBL AK108359 [AGTTGTGATAGCCATGGAACCCGACGCCGACGAGTTGGTGTTCGACAGCTCATACCTCCGCATCTACAAGAACGGCAAGGTAGACCGCCTCCACCGGCCCCCTCTCCTCGCCGCGGGCGTCGACGATGCCACCGGCGTCGTCTCCAAGGACGTCGTCCTCGACGCCGGGACAGGACTGTTCGTGCGCGTCTTCCTGCCCAAGGTGCAAGACCAAGAACTCGGCAAAAAGCTTCCTGTCCTCGTGTACTTCCACGGCGGCGGCTTCATCATTGAGTCCGCGGACTCAGCCACGTACCACAACTACCTCAACTCCGCCGCCGCCGCCGCCGGCGTCCTTGTGGTGTCCGTCGACTACCGCTTAGCCCCGGAGAACCCGCTCCCTGCAGGATATGATGATTCTTGGGCGGCGCTCCAGTGGGCGGTGTCCGCCCATGCGGACGACTGGATCACCGAGCACGGCGACACGGCGCGCGTCTTCGTCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACGTGCTCCTGAGGGCATCCTCGAACAAAGGACCGAGGATAGAGGGCGCGATCATGCTGCACCCGTTCTTCGGCGGGAGCACGGCCATCGACGGCGAGTCCGACGAGGCGGTCTACATAGCCTCGAAGGTGTGGCCGTTCGCGTGCCCGGGCGCAGTGAACGGCGTGGACGACCCGAGGATGAACCCGACGGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGGGTGCGAGCGGCTGCTCGTGTGCACGGCGCAGGAGGACTGGCTGGTGGCGAGGGGCCGCGCGTACTACGGCGCCGTGGCCGCGAGCGCGTGGCGCGGGAGCGCGGCGTGGCACGAGACGGAGGGAGAGGGGCACGTCTTCTTCCTTCGCGATCCGGGGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGCGTTCATAGCCAGCGCATGAACTTCTCTTCTTCATCTGTGTATGCTTGCGGACTTGCAGCTGTATCTTGCTTGCCTGAGATTAATAAATCAATAAAATGTTATATATT]
consensusID : consensus_11764#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence
[GCGAGGGCCCCGCGTACTTCGGCTGCCGTGCCGCGAGCGCTTGGCGCGGGAGCCGGCGTGGCACGAGACCAGAGGGAGAGGGGCACTCTTCTTCCTTCGCGATCCGGGGTGCGACAAGGCCACACAGCTCATGGACCGCGTCGTGGCGTTCATATCCGGCGCATGAGCTGCATGCTCTTCATCTGCATATGCTTTCCGGTTGCAACTGTCCTTCATTGAAACCAAATAAATGGTTCTATTAGTTTTTTTTTTGGGGACGGGAATATGAATTTCGCATTTGCAGTTCGCTGCTACGTTCTTGGAAGAAATATTTTATCGCGTGTATGTTCTTCCACTTGGACTGGTGGTTTCCGTTGCTCTGAGCCTCGGTCACAAGCCGACCAGCGATGTAATGTTGTCATGTTGCACTCGGTGGTAGCAACGTTCCGTTTGGTTTTTTTCTCCTGGACATGGTAACTACTTTTTCAGTCCCCAAAAAAAAAA]
[+] EMBL BI813664 [GCGAGGGCCCCGCGTACTTCGGCTGCCGTGCCGCGAGCGCTTGGCGCGGGAGCCGGCGTGGCACGAGACCAGAGGGAGAGGGGCACTCTTCTTCCTTCGCGATCCGGGGTGCGACAAGGCCACACAGCTCATGGACCGCGTCGTGGCGTTCATATCCGGCGCATGAGCTGCATGCTCTTCATCTGCATATGCTTTCCGGTTGCAACTGTCCTTCATTGAAACCAAATAAATGGTTCTATTAGTTTTTTTTTTGGGGACGGGAATATGAATTTCGCATTTGCAGTTCGCTGCTACGTTCTTGGAAGAAATATTTTATCGCGTGTATGTTCTTCCACTTGGACTGGTGGTTTCCGTTGCTCTGAGCCTCGGTCACAAGCCGACCAGCGATGTAATGTTGTCATGTTGCACTCGGTGGTAGCAACGTTCCGTTTGGTTTTTTTCTCCTGGACATGGTAACTACTTTTTCAGTCCCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11764#0 CTTATCTGTTGCCACATGGCCACACCAAGTCCAAACCCTCACCTCTCCATGTCCATCAAT 60
consensus_11764#1 -------------------------TAAACTTCATTTGATTTTTTTCTAAAAAAATCAAA 35
consensus_11764#2 ------------------------------------------------------------
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 GG-AGGAGCCACCGTTTCGGCTGGTTGGGCGGC---CACCCAACCTCGCCGGCGACGAAC 116
consensus_11764#1 GACAAGATCCAAGGACGAAAAAGGACGTGCGGCAGACGCTCTCCCTCCCAGGTCCCAGCC 95
consensus_11764#2 ------------------------------------------------------------
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 AGTGGATCACAGTAGCAGAAGCTG--CTTACTTCGACCATCATATGGATCTACCAGAGGC 174
consensus_11764#1 AGGGGTTTAT--TAGCTGATTCAAGACGTACCTT-ATCATC-TCTCCATTCGCCA----- 146
consensus_11764#2 ------------------------------------------------------------
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 TTCGGTACGAGGAGAATTGCAGTTCGTTCTGCCTCCCAGAAGAACTCGTCTCCTCCATTG 234
consensus_11764#1 TCGAGCCCGCCGGAGGCCAAAACGCCTTCTG-----CGGCAGCATCCACCAATTC--GCC 199
consensus_11764#2 ---------------------------------------------------AGTT--GTG 7
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 ATGACCACTGAGCAAGAAGCCGAAGACGAGGTGGTGCTAGAGTCGCCGGCGCACTTCCGC 294
consensus_11764#1 ATGGCCTCCGAGACCGAGCCCGA---CGCCGTGGTGTTCGAGGCTCCGGCGCACTTCCGC 256
consensus_11764#2 ATAGCCATGGAACCCGACGCCGA---CGAGTTGGTGTTCGACAGCTC---ATACCTCCGC 61
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 ATCTACAAGAGCGGCAAGATCGACCGCCTCAACCGGCCACCCGTCCTGCCCGCTGGTCTC 354
consensus_11764#1 ATCTACAAGAGCGGCAAGATGGACCGCCTTCACCGACCACCCTGCCTGCCCGCTGGCGTC 316
consensus_11764#2 ATCTACAAGAACGGCAAGGTAGACCGCCTCCACCGGCCCCCTCTCCTCGCCGCGGGCGTC 121
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 GACGAGGCCACCGGCGTCACCTCCAAGGACGTCGTCCTCGACGCCGACACCGGCGTCTCC 414
consensus_11764#1 GACGAGGCCACCGGCGTCGCCTCCAAGGACGTCGTCATCGACGCCGGCACCGGCCTCTCC 376
consensus_11764#2 GACGATGCCACCGGCGTCGTCTCCAAGGACGTCGTCCTCGACGCCGGGACAGGACTGTTC 181
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 GTCCGCCTCTTCCTCCCCAAGCT------TCAGGAGCCCTCCAAGAAGCTCCCCGTCGTC 468
consensus_11764#1 GTGCGCCTCTACCTCCCCAAGAT------CCAAGAGCCATCCAAGAAGCTCCCCGTCCTC 430
consensus_11764#2 GTGCGCGTCTTCCTGCCCAAGGTGCAAGACCAAGAACTCGGCAAAAAGCTTCCTGTCCTC 241
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 GTCTTCTTCCACGGCGGCGCGTTCTTCATCGAGTCGGCCGGCTCCGAGACGTACCACAAC 528
consensus_11764#1 GTCTTCTTCCACGGAGGCGGCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAAC 490
consensus_11764#2 GTGTACTTCCACGGCGGCGGCTTCATCATTGAGTCCGCGGACTCAGCCACGTACCACAAC 301
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 TACGTCAACTCCCTCGCCGCGGCGGCCG-GTGTCCTCGTCGTGTCCGTCGACTACCGGCT 587
consensus_11764#1 TACGTCAACCCCTTCGCCGCCGCGGCCG-GCGTCGTCGTGGTGTCCGTCGACTACCGCCT 549
consensus_11764#2 TACCTCAACTCCGCCGCCGCCGCCGCCG-GCGTCCTTGTGGTGTCCGTCGACTACCGCTT 360
consensus_11764#3 ------------------GCGAGGGCCCCGCGTACTTCGGCTGCCGTGCCGCGAGCGCTT 42
** *** * ** * ** * * * * ** *
consensus_11764#0 CGCCCCGGAGCACCCGCTCCCCGCGGGCTACGACGACTCGTGGGCGGCGCTCCAGTGGGC 647
consensus_11764#1 CGCCCCGGAGCACCCGCTGCCGGCGGCCTACGACGATTCCTGGGCCGGGCTACTGTGGGC 609
consensus_11764#2 AGCCCCGGAGAACCCGCTCCCTGCAGGATATGATGATTCTTGGGCGGCGCTCCAGTGGGC 420
consensus_11764#3 GGCGCGGGAGCCGGCGTGGCACG-AGACCAGAGGGA---GAGGGGCACTCTTCTTCCTTC 98
** * **** ** * * * * ** *** ** * *
consensus_11764#0 GGCCTCGGCGCA---AGACGGATGGATCGCCGAGCACGGCGAC-ACGGCTCGCCTCTTCG 703
consensus_11764#1 GGCGTCAGCGCA---AGATGGCTGGCTCGCGGAGCACGGCGAC-GTGTCCCGACTGTTCA 665
consensus_11764#2 GGTGTCCGCCCATGCGGACGACTGGATCACCGAGCACGGCGAC-ACGGCGCGCGTCTTCG 479
consensus_11764#3 GCGATCCGGG-----GTGCGACAAGGCCACACAGCTCATGGACCGCGTCGTGGC-GTTCA 152
* ** * * * * * *** * *** * * * ***
consensus_11764#0 TCGCCGGCGACAGCGCCGGCGCCAACATCGCGCACGAGATGCTCGTGAGGGCGGCCGCCA 763
consensus_11764#1 TCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACATGCTCCTGAGGGCGGCCTCCA 725
consensus_11764#2 TCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACGTGCTCCTGAGGGCATCCTCGA 539
consensus_11764#3 TATCCGGCG-CATGAGCTGCATGCTCTTCATCTGC-ATATGCTTTC-----CGGTTGCAA 205
* ****** ** * ** * ** * * **** * * *
consensus_11764#0 GCGGCGGGCGCCCGAGGATGGAGGGCGCGATCCTGCTGCACCCGTGGTTCGG--CGGGAG 821
consensus_11764#1 ACGGCGGGC---CGAGGATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGG--CGGGAG 780
consensus_11764#2 ACAAAGGAC---CGAGGATAGAGGGCGCGATCATGCTGCACCCGTTCTTCGG--CGGGAG 594
consensus_11764#3 CTGTCCTTCA--TTGAAACCAAATAAATGGTTCTATTAGTTTTTTTTTTGGGGACGGGAA 263
* * * * * * * * ** ** *****
consensus_11764#0 CAAGGAGATCGAGGGGGAGCCGGAGGGCGGCGCCGCGATCACCGCGGCGATGTGGAACTA 881
consensus_11764#1 CACGGTTCTCGAGGGGGAGCCCCCGGCCGCGGCCGCGCTCACCGGTATGATATGGTGCTA 840
consensus_11764#2 CACGGCCATCGACGGCGAGTCCGACGAGGCGGTCTACATAGCCTCGAAGGTGTGGCCGTT 654
consensus_11764#3 TATGAATTTCGC-----ATTTGCAGTTCGCTGCTACGTTCTTGGAAGAAATATTTTATCG 318
* * *** * * * * * *
consensus_11764#0 CGCGTGCCCGGGCGCCGCCGCCGGCGCGGACGACCCGCGGCTGAACCCGCTGGCGGCCGG 941
consensus_11764#1 CGCGTGCCCCGGCGCGTCCGGCGGCGCGGACGACCCGAGGATGAACCCGCTTGCGCCTGG 900
consensus_11764#2 CGCGTGCCCGGGCGCAGTGAACGGCGTGGACGACCCGAGGATGAACCCGACGGCGCCTGG 714
consensus_11764#3 CGTGTATGTTCTTCCACTTGGACTGGTGGTTTCCGTTGCTCTGAGCCT--CGGTCACAAG 376
** ** * * ** * *** ** * * *
consensus_11764#0 CGGGCCGGTGCTGGAGGAGC-TCGCGTGCGAGAGGATGCTCGTGTGCGCGGGGGGGAAGG 1000
consensus_11764#1 CGCGCCGGCGCTGGAGAAGC-TCGCGTGCGAGAGGATGCTGGTGGCGGCGGGGCAGACCG 959
consensus_11764#2 CGCGCCGGCGCTGGAGAAGC-TCGGGTGCGAGCGGCTGCTCGTGTGCACGGCGCAGGAGG 773
consensus_11764#3 CCGACCAGCGATGTAATGTTGTCATGTTGCACTCGGTGGTAGCAACGTTCCGTTTGGTTT 436
* ** * * ** * ** ** * * ** * * *
consensus_11764#0 ACGTGCTCGCGGCGAGGAACCGCGCGTACTACGACGCCGTGGCGGCGAGCGCGTGGCGCG 1060
consensus_11764#1 ACGGGCTGGCGGCGAGGGACCGCGCGTACTACGACGCCGTGGCGGCGAGCCCCTGGCGCG 1019
consensus_11764#2 ACTGGCTGGTGGCGAGGGGCCGCGCGTACTACGGCGCCGTGGCCGCGAGCGCGTGGCGCG 833
consensus_11764#3 TTTTCTCCTGGACATGGTAAC-TACTTTTTCAGTCCCCAAAAAAAAAA------------ 483
* * ** * * * * * * ** *
consensus_11764#0 GGAGCGCGGCGTGGCTCGAGTCGGAGGGGGAGGGGCACGTGTTCTTCCTGGGGAATTCGG 1120
consensus_11764#1 GGACGGCGACGTGGGTGGAGTCGGAGGGGGAGGGGCACGTCTTCTTCCTGGAGAAGCCGG 1079
consensus_11764#2 GGAGCGCGGCGTGGCACGAGACGGAGGGAGAGGGGCACGTCTTCTTCCTTCGCGATCCGG 893
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 AGTGCGAGAATGCCAAGCAGCTCATGGATCGCATCGTGGCGTTCATAGCCGGTGGATGAG 1180
consensus_11764#1 AGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGAGTTCATATCCGCCGGGTCTC 1139
consensus_11764#2 GGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGCGTTCATAGCCAGCGCATGAA 953
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 CTGCTTGGATCGTATATAAGTCAACATTGAAGTTGAATCGAGTTATTTGTTTCACTCATC 1240
consensus_11764#1 CTGCCTGAT-----TAAAAATTAGCTCC--ATCCGGAT-GCGCCCCGCGTTGAAGTCGTC 1191
consensus_11764#2 CTTCTCTTCTT---CATCTGTGTATGCT---TGCGGACTTGCAGCTGTATCTTGCTTGCC 1007
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 ATTCACTGGGTTGAAATCGAATCGAAGTAAATAGTGTACAAACACTACTAAGCTTTCGAA 1300
consensus_11764#1 GT--AATGTATCGAACTTAG---GGCTCGAATAATTTG----GACTGATCATCCTTTCAT 1242
consensus_11764#2 TG--AGATTAATAAATCAATAAAATGTTATATATT------------------------- 1040
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 GGTGAAACTGAAATTGATTGCGTGCCACAAAATTGTGATGTATTTGTAATAGTACATCCC 1360
consensus_11764#1 GA---------------------------------------------------------- 1244
consensus_11764#2 ------------------------------------------------------------
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 TAGAAGGGTCATCGATAGATTTTTTTTTCTTGCATAATCAAAAGTGGCAACTATTACCTT 1420
consensus_11764#1 ------------------------------------------------------------
consensus_11764#2 ------------------------------------------------------------
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 ACAATGAACCATCGCATGGACTAGGGAACATAAGGGTATGTTAAATGATAGAGACGAGTA 1480
consensus_11764#1 ------------------------------------------------------------
consensus_11764#2 ------------------------------------------------------------
consensus_11764#3 ------------------------------------------------------------
consensus_11764#0 TGGTCTCTTAGACAATACAA 1500
consensus_11764#1 --------------------
consensus_11764#2 --------------------
consensus_11764#3 --------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||