cluster # 11766

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Oryza sativa
cluster # 11766 cluster # 11766 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11766#0 length = 757 sequences # 8

consensus_11766#1 length = 530 sequences # 1

consensusID : consensus_11766#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 757
fasta sequence

                              [CCTTCCTCCACTGATGGCGCCAGCGGGTGCAGAGGCTGGACGGACGGCAACGGCGCGGTGGGTGCAGAGGCCGGTGAGGCGCTGCGGCCGGCCGTTGGCGTCGTGGCCGGGTGACGGAGAGGAGGAGGCCGTGTGGCGGCTCCGTGCGATTTGGAGGCCGGGACGGCGTGGTGGGGCTGGCTGCGGCCTCGGATGGAGGAGGCGGTGGCGACAGCTGCGGCCGCTCGCGCGCGCGGATCATGCAGCGGCGGCTTAGGCGCGTGGATCCGGTGGCGGCGGCTGCTCGGGCGCGCGGATCCGGGTATTCCCCCACACGGATCCTGAGTCGGCGGCGGCAGCGTAGTCTCACCTCCCCACGGTGG-CGGCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCC-TTTCCCCT-CTCTTCTCTATCG-CCGGCAACTCCCACAGGCCGGATCCGGCGTAGGCGTCGGTGGCCCGGTTGCGGTGCCTTCCCCTCCACCAGATCCGGCGGCGAGAGGGGAGGCGGTGGCTGCCCGGTGGCGGGATGATTATTTAGATGTTCTTGTGTGATGTTTTAGTGAAAAATTTCTGTGATGTTTTTCAATGTTTCCTATGATGTTTTTTGGTTTGGGATTGGGATTGATTGATGCGGGGTGGATAAGGTCGATGCATCAGCTCGATTAGGAGAGGGGAATCTGTTGTTCTTGAGGATTTTTATTCAATGTGATTTCTTTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK073716             [CCTTCCTCCACTGATGGCGCCAGCGGGTGCAGAGGCTGGACGGACGGCAACGGCGCGGTGGGTGCAGAGGCCGGTGAGGCGCTGCGGCCGGCCGTTGGCGTCGTGGCCGGGTGACGGAGAGGAGGAGGCCGTGTGGCGGCTCCGTGCGATTTGGAGGCCGGGACGGCGTGGTGGGGCTGGCTGCGGCCTCGGATGGAGGAGGCGGTGGCGACAGCTGCGGCCGCTCGCGCGCGCGGATCATGCAGCGGCGGCTTAGGCGCGTGGATCCGGTGGCGGCGGCTGCTCGGGCGCGCGGATCCGGGTATTCCCCCACACGGATCCTGAGTCGGCGGCGGCAGCGTAGTCTCACCTCCCCACGGTGG CGGCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCC TTTCCCCT CTCTTCTCTATCG CCGGCAACTCCCACAGGCCGGATCCGGCGTAGGCGTCGGTGGCCCGGTTGCGGTGCCTTCCCCTCCACCAGATCCGGCGGCGAGAGGGGAGGCGGTGGCTGCCCGGTGGCGGGATGATTATTTAGATGTTCTTGTGTGATGTTTTAGTGAAAAATTTCTGTGATGTTTTTCAATGTTTCCTATGATGTTTTTTGGTTTGGGATTGGGATTGATTGATGCGGGGTGGATAAGGTCGATGCATCAGCTCGATTAGGAGAGGGGAATCTGTTGTTCTTGAGGATTTTTATTCAATGTGATTTC                                       ]
[+] EMBL AK099059             [  TTCCTCCACTGATGGCGCCAGCGGGTGCAGAGGCTGGACGGACGGCAACGGCGCGGTGGGTGCAGAGGCCGGTGAGGCGCTGCGGCCGGCCGTTGGCGTCGTGGCCGGGTGACGGAGAGGAGGAGGCCGTGTGGCGGCTCCGTGCGATTTGGAGGCCGGGACGGCGTGGTGGGGCTGGCTGCGGCCTCGGATGGAGGAGGCGGTGGCGACAGCTGCGGCCGCTCGCGCGCGCGGATCATGCAGCGGCGGCTTAGGCGCGTGGATCCGGTGGCGGCGGCTGCTCGGGCGCGCGGATCCGGGTATTCCCCCACACGGATCCTGAGTCGGCGGCGGCAGCGTAGTCTCACCTCCCCACGGTG   GGCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCC TTTCCCCT CTCTTCTCTATCG CCGGCAACTCCCACAGGCCGGATCCGGCGTAGGCGTCGGTGGCCCGGTTGCGGTGCCTTCCCCTCCACCAGATCCGGCGGCGAGAGGGGAGGCGGTGGCTGCCCGGTGGCGGGATGATTATTTAGATGTTCTTGTGTGATGTTTTAGTGAAAAATTTCTGTGATGTTTTTCAATGTTTCCTATGATGTTTTTTGGTTTGGGATTGGGATTGATTGATGCGGGGTGGATAAGGTCGATGCATCAGCTCGATTAGGAGAGGGGAATCTGTTGTTCTTGAGGATTTTTATTCAATGTGAT                                          ]
[+] EMBL AU161129             [                                                                                                                                                                                                                                         CGGATCATGCAGCGGCGGCTTAGGCGCGTGGATCCGGTGGCGGCGGCTGCTCGGGCGCGCGGATCCGGGTATTCCCCCACACGGATCCTGAGTCGGCGGCGGCAGCGTAGTCTCACCTCCCCACGGTGG CGGCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCC TTTCCCCT CTCTTCTCTATCG CCGGCAACTCCCACANGCCGGATCCGGCGTAGGCGTCGGTGGCCCGGTTGCGGTGCCTTCCCCTCCACCAGATCCGGCGGCGAGAAGGGAGGCGGTGGCTGCCCGGTGGCGGGATGATTATTTAGATGTTCTTGTGTGATGTTTTAGTGAAAAATTTCTGTGATGTTTTTCAATGTTTCCTATGATGTTTTTTGGTTTGGGATTGGGATTGATTGATGCGGGGTGGATAANGTCGATGCATCAGCTCGATTAGGAGAGGGGAATCTGTTGTTCTTGAGGATTTTTATTCAATGTGATTTCTTTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094716             [                                                                                                                                                                                                                                         CGGATCATGCAGCGGCGGCTTAGGCGCGTGGATCCGGTGGCGGCGGCTGCTCGGGCGCGCGGATCCGGGTATTCCCCCACACGGATCCTGAGTCGGCGGCGGCAGCGTAGTCTCACCTCCCCACGGTGG CGGCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCC TTTCCCCT CTCTTCTCTATCG CCGGCAACTCCCACAGGCCGGATCCGGCGTAGGCGTCGGTGGCCCGGTTGCGGTGCCTTCCCCTCCACCAGATCCGGCGGCGAGAGGGGAGGCGGTGGCTGCCCGGTGGCGGGATGATTATTTAGATGTTCTTGTGTGATGTTTTAGTGAAAAATTTCTGTGATGTTTTTCAATGTTTCCTATGATGTTTTTTGGTTTGGGATTGGGATTGATTGATGCGGGGTGGATAAGGTCGATGCATCAGCTCGATTAGGAGAGGGGAATCTGTTGTTCTTGAGGATTTTTATTCAATGTGATTTCTTTATCTACTAAAAAA                       ]
[+] EMBL CA998939             [                                                                                                                                                                                                                                                                                                     GGATCCGGGTATTCCCCCACACGGATCCTGAGTCGGCGGCGGCAGCGTAGTCTCACCTCCCCACGGTGG CGGCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCC TTTCCCCT CTCTTCTCTATCG CCGGCAACTCCCACAGGCCGGATCCGGCGTAGGCGTCGGTGGCCCGGTTGCGGTGCCTTCCCCTCCACCAGATCCGGCGGCGAGAGGGGAGGCGGTGGCTGCCCGGTGGCGGGATGATTATTTAGATGTTCTTGTGTGATGTTTTAGTGAAAAATTTCTGTGATGTTTTTCAATGTTTCCTATGATGTTTTTTGGTTTGGGATTGGGATTGATTGATGCGGGGTGGATAAGGTCGATGCATCAGCTCGATTAGGAGAGGGGAATCTGTTGTTCTTGAGGATTTTTATTCAATGTGATTTCTTTATCTAAAAAAAAAAAAAAA                 ]
[-] EMBL OSS14703A            [                                                                                                                                                                                                                                                                                                              TATTCCCCCACACGGATCCTGAGTCGGCGGCGGCAGCGTAGTCTCACCTCCCCACGGTGG CGCCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCC TTTCCCCT CTCTTCTCTATCG CCGGCAACTCCCACAGGCCGGATCCGGCGTAGNCGTCGGTGGCCCGGTTGCGGTGCCTTCCCCTCCACCAGATCCGGCGGCGAGAGGGGAGGCGGTGGCTGCCCGGTGGCGGGATGATTATTTAGATGTTCTTGTGTGATGTTTTAGTGAAAAATTTCTGTGATGTTTTTCAATGTTTCCTATGATGTTTTTTGGTTTGGGATTGGGATTGATTGATGCGGGGTGGATAAGGTCGATGCATCAGCTCGATTAGGAGAGGGGAATCTGTTGTTCTTGAGGATTTTTATTCAATGTGATTTCTTT                                    ]
[+] EMBL C99600               [                                                                                                                                                                                                                                                                                                                                                      cctaacCCTCCCCA GGTGGCCGNCGTTCCCTCTAACTCCCTCTCCTTCCCGTCCCTTTTCCCCTCCTCTCCTCTATCGNCCGGCAACTCCCANAGGCCGGATCCGCCGTAGCCGTCGNTGGCCCGGTTGCGGTGCCTTCCCCTCCACCAGATCCGGCGGCGAGAGGGGAGNCGGTGGCTGCCCGGTGGCGGGATGATTATTTAGATGTTCTTGTGTGATGTTTTAGTGAAAAATTTCTGTGATGTTTTTCAATGTTTCCTATGATGTTTTTTGGTTTGGGATTGGGATTGATTGATGCGGGGTGGATAAGGTCGATGCATCAGCTCGATTAGGAGAGGGGAATCTGTTGTTCTTGAGGATTTNTATTCAATGTGATTTCTTTATCTACTAAA                          ]
[+] EMBL C97277               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCCGGTGGCGGGATGATTATTTAGATGTNCTTGTGTGATGTTTTAGTGAAAAATTTCTGTGATGTTTTTCAATGTTTCCTATGATGTTTTTTGGTTTGGGATTGGGATTGATTGATGCGGGGTGGATAAGGTCGATGCATCAGCNCGATTAGGAGAGGGGAATCTGTTGTTCTTGAGGATTTTTATTCAATGTGATTTCTTTNTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11766#0
CCTTCCTCCACTGATGGCGCCAGCGGGTGCAGAGGCTGGACGGACGGCAACGGCGCGGTG
GGTGCAGAGGCCGGTGAGGCGCTGCGGCCGGCCGTTGGCGTCGTGGCCGGGTGACGGAGA
GGAGGAGGCCGTGTGGCGGCTCCGTGCGATTTGGAGGCCGGGACGGCGTGGTGGGGCTGG
CTGCGGCCTCGGATGGAGGAGGCGGTGGCGACAGCTGCGGCCGCTCGCGCGCGCGGATCA
TGCAGCGGCGGCTTAGGCGCGTGGATCCGGTGGCGGCGGCTGCTCGGGCGCGCGGATCCG
GGTATTCCCCCACACGGATCCTGAGTCGGCGGCGGCAGCGTAGTCTCACCTCCCCACGGT
GGCGGCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCCTTTCCCCTCTCTTCTCTATCGCC
GGCAACTCCCACAGGCCGGATCCGGCGTAGGCGTCGGTGGCCCGGTTGCGGTGCCTTCCC
CTCCACCAGATCCGGCGGCGAGAGGGGAGGCGGTGGCTGCCCGGTGGCGGGATGATTATT
TAGATGTTCTTGTGTGATGTTTTAGTGAAAAATTTCTGTGATGTTTTTCAATGTTTCCTA
TGATGTTTTTTGGTTTGGGATTGGGATTGATTGATGCGGGGTGGATAAGGTCGATGCATC
AGCTCGATTAGGAGAGGGGAATCTGTTGTTCTTGAGGATTTTTATTCAATGTGATTTCTT
TATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_11766#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [CGCGGANTCCTGCAGCGGCGGCTTAGGCGCGTGGATCCGGTGGCGGCGGCTGCTCGGGCGCGCGGATCCGGGTATTCCCCCACACGGATCCTGAGTCGGCGGCGGTAGCATAGTCTCACCTCCCCACGGTGGCGGCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCCTTTCCCCTCTCTTCTCTATCGCCGGCAACTCCCACAGGCCGGATCCGGCGTAGGCGTCGGTGGCCCGGTTGCGGTGCCTTCCCCTCCACCAGATCCGGCGGCGAGAGGGGAGGCGGTGGCTGCCCGGTGGCGGGATGATTATTTAGATGTTCTTGTGTGATGTTTCAGTGAAAGATTTCTGTGATGTTTTTCAATGTTTCCTATGATGTTTCAGGGTTTGGGATTGAGATTGATTGATGCGGGGTGGATAAGGTCGATGCATCAGCTCGATTAGGAGAGGGGAATCTGTCGTTCTTGAGGATTTGCATTCACTGTGATTTCTTTATCTACTACTGAGTCCTGACTGTTCTAAAAAGAAGAAAA]

[+] EMBL BU673002             [CGCGGANTCCTGCAGCGGCGGCTTAGGCGCGTGGATCCGGTGGCGGCGGCTGCTCGGGCGCGCGGATCCGGGTATTCCCCCACACGGATCCTGAGTCGGCGGCGGTAGCATAGTCTCACCTCCCCACGGTGGCGGCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCCTTTCCCCTCTCTTCTCTATCGCCGGCAACTCCCACAGGCCGGATCCGGCGTAGGCGTCGGTGGCCCGGTTGCGGTGCCTTCCCCTCCACCAGATCCGGCGGCGAGAGGGGAGGCGGTGGCTGCCCGGTGGCGGGATGATTATTTAGATGTTCTTGTGTGATGTTTCAGTGAAAGATTTCTGTGATGTTTTTCAATGTTTCCTATGATGTTTCAGGGTTTGGGATTGAGATTGATTGATGCGGGGTGGATAAGGTCGATGCATCAGCTCGATTAGGAGAGGGGAATCTGTCGTTCTTGAGGATTTGCATTCACTGTGATTTCTTTATCTACTACTGAGTCCTGACTGTTCTAAAAAGAAGAAAA]




>consensus_11766#1
CGCGGANTCCTGCAGCGGCGGCTTAGGCGCGTGGATCCGGTGGCGGCGGCTGCTCGGGCG
CGCGGATCCGGGTATTCCCCCACACGGATCCTGAGTCGGCGGCGGTAGCATAGTCTCACC
TCCCCACGGTGGCGGCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCCTTTCCCCTCTCTT
CTCTATCGCCGGCAACTCCCACAGGCCGGATCCGGCGTAGGCGTCGGTGGCCCGGTTGCG
GTGCCTTCCCCTCCACCAGATCCGGCGGCGAGAGGGGAGGCGGTGGCTGCCCGGTGGCGG
GATGATTATTTAGATGTTCTTGTGTGATGTTTCAGTGAAAGATTTCTGTGATGTTTTTCA
ATGTTTCCTATGATGTTTCAGGGTTTGGGATTGAGATTGATTGATGCGGGGTGGATAAGG
TCGATGCATCAGCTCGATTAGGAGAGGGGAATCTGTCGTTCTTGAGGATTTGCATTCACT
GTGATTTCTTTATCTACTACTGAGTCCTGACTGTTCTAAAAAGAAGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11766#0      CCTTCCTCCACTGATGGCGCCAGCGGGTGCAGAGGCTGGACGGACGGCAACGGCGCGGTG 60
consensus_11766#1      ------------------------------------------------------------
                                                                                   

consensus_11766#0      GGTGCAGAGGCCGGTGAGGCGCTGCGGCCGGCCGTTGGCGTCGTGGCCGGGTGACGGAGA 120
consensus_11766#1      ------------------------------------------------------------
                                                                                   

consensus_11766#0      GGAGGAGGCCGTGTGGCGGCTCCGTGCGATTTGGAGGCCGGGACGGCGTGGTGGGGCTGG 180
consensus_11766#1      ------------------------------------------------------------
                                                                                   

consensus_11766#0      CTGCGGCCTCGGATGGAGGAGGCGGTGGCGACAGCTGCGGCCGCTCGCGCGCGCGGATCA 240
consensus_11766#1      -------------------------------------------------CGCG-GANTCC 10
                                                                        **** *  ** 

consensus_11766#0      TGCAGCGGCGGCTTAGGCGCGTGGATCCGGTGGCGGCGGCTGCTCGGGCGCGCGGATCCG 300
consensus_11766#1      TGCAGCGGCGGCTTAGGCGCGTGGATCCGGTGGCGGCGGCTGCTCGGGCGCGCGGATCCG 70
                       ************************************************************

consensus_11766#0      GGTATTCCCCCACACGGATCCTGAGTCGGCGGCGGCAGCGTAGTCTCACCTCCCCACGGT 360
consensus_11766#1      GGTATTCCCCCACACGGATCCTGAGTCGGCGGCGGTAGCATAGTCTCACCTCCCCACGGT 130
                       *********************************** *** ********************

consensus_11766#0      GGCGGCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCCTTTCCCCTCTCTTCTCTATCGCC 420
consensus_11766#1      GGCGGCGTGCCCTCTCACTCCCTCTCCTTCCCGTCCCTTTCCCCTCTCTTCTCTATCGCC 190
                       ************************************************************

consensus_11766#0      GGCAACTCCCACAGGCCGGATCCGGCGTAGGCGTCGGTGGCCCGGTTGCGGTGCCTTCCC 480
consensus_11766#1      GGCAACTCCCACAGGCCGGATCCGGCGTAGGCGTCGGTGGCCCGGTTGCGGTGCCTTCCC 250
                       ************************************************************

consensus_11766#0      CTCCACCAGATCCGGCGGCGAGAGGGGAGGCGGTGGCTGCCCGGTGGCGGGATGATTATT 540
consensus_11766#1      CTCCACCAGATCCGGCGGCGAGAGGGGAGGCGGTGGCTGCCCGGTGGCGGGATGATTATT 310
                       ************************************************************

consensus_11766#0      TAGATGTTCTTGTGTGATGTTTTAGTGAAAAATTTCTGTGATGTTTTTCAATGTTTCCTA 600
consensus_11766#1      TAGATGTTCTTGTGTGATGTTTCAGTGAAAGATTTCTGTGATGTTTTTCAATGTTTCCTA 370
                       ********************** ******* *****************************

consensus_11766#0      TGATGTTTTTTGGTTTGGGATTGGGATTGATTGATGCGGGGTGGATAAGGTCGATGCATC 660
consensus_11766#1      TGATGTTTCAGGGTTTGGGATTGAGATTGATTGATGCGGGGTGGATAAGGTCGATGCATC 430
                       ********   ************ ************************************

consensus_11766#0      AGCTCGATTAGGAGAGGGGAATCTGTTGTTCTTGAGGATTTTTATTCAATGTGATTTCTT 720
consensus_11766#1      AGCTCGATTAGGAGAGGGGAATCTGTCGTTCTTGAGGATTTGCATTCACTGTGATTTCTT 490
                       ************************** **************  ***** ***********

consensus_11766#0      TATCTAAAAAAAAAAAAAAAAAAA---AAAAAAAAAAAAA 757
consensus_11766#1      TATCTACTACTGAGTCCTGACTGTTCTAAAAAGAAGAAAA 530
                       ******  *   *      *       ***** ** ****