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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 986 fasta sequence
[CCGCCCACGCTTATCACCACACACAGACACAGAAGGAAATGTCGGCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCCTCGCCGCCGGT-G-CGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGC-TGCCCAAAGATGGGCATCAGGAAGTTGC-TGATGTCGCACTACA-GCTTGCCAAGTACTGCATAGACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTGCTCAGTACCGACATCACCGGGAGGGCTCTACCGGACTCCTCTCGGCCGCCTGATATTCAAAACCGATGAGATGGCTCAGGTGGTGCAAGCGCCTGATGTTGTAAAAAACAAGGTGTCCTTCTCTGTCTTTGGTTTCGATGGTGCGGTATCTCTGAAAGGCAAGCTG-AATGTGCTGGATGGTAAGTGGATTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCT-CCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGCAATGTTTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACAATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCAAAATGACAAAATGTTTGTAGTT--TTTGTGATTAATGTGATGGTTAAATTGTCCAGACTAATGAGCATGGTTATGGATTTTTGGTGAACCCTGCAAANA]
[+] EMBL OSS11245A [CCGCCCACGCGTCCGACCACACACAGACACAGAAGGAAATGTCGGCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCTNCGCCG GNTNGNCGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGCTTGCCCAAAGATGGGCATCAGGAAGTTGCTTGATGTCGNACTAAANGTTTGCCAAGTACTGAATAGACGNTC ]
[+] EMBL AK059884 [ CTTATCACCACACACAGACACAGAAGGAAATGTCGGCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCCTCGCCGCCGGT G CGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGC TGCCCAAAGATGGGCATCAGGAAGTTGC TGATGTCGCACTACA GCTTGCCAAGTACTGCATAGACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTGCTCAGTACCGACATCACCGGGAGGGCTCTACCGGACTCCTCTCGGCCGCCTGATATTCAAAACCGATGAGATGGCTCAGGTGGTGCAAGCGCCTGATGTTGTAAAAAACAAGGTGTCCTTCTCTGTCTTTGGTTTCGATAGTGCGGTATCTCTGAAAGGCAAGCTG AATGTGCTGGATGGTAAGTGGATTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCT CCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGCAATGTTTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACAATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCAAAATGACAAAATGTTTGTAGTT TTTGTGATTAATGTGATGGTTAAATTGTCCAGACTAATGAGCATGGTTATGG ]
[+] EMBL AK104482 [ CTTATCACCACACACAGACACAGAAGGAAATGTCGGCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCCTCGCCGCCGGT G CGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGC TGCCCAAAGATGGGCATCAGGAAGTTGC TGATGTCGCACTACA GCTTGCCAAGTACTGCATAGACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTGCTCAGTACCGACATCACCGGGAGGGCTCTACCGGACTCCTCTCGGCCGCCTGATATTCAAAACCGATGAGATGGCTCAGGTGGTGCAAGCGCCTGATGTTGTAAAAAACAAGGTGTCCTTCTCTGTCTTTGGTTTCGATGGTGCGGTATCTCTGAAAGGCAAGCTG AATGTGCTGGATGGTAAGTGGATTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCT CCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGCAATGTTTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACAATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCAAAATGACAAAATGTTTGTAGTT TTTGTGATTAATGTGATGGTTAAAT ]
[+] EMBL OSS11616A [ GGCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCTTCGCCNCTNGN C NGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGC TGCCCAAAGATGGGCATCAGGAAGTTGC TGATGTCG ACTACA GTTTGCCAAGTACTGCATAGACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTTCTCAGTACCGANAT AACGGGAGGGNTNTACCGGACTTCTTTNGGCCG CTGATATTAAAAACC ]
[+] EMBL BF430886 [ CATCGGCCGCCGCTCTCCGGCGGCCTCGCCGCCGGT G CGCCACACCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGC TGCCCAAAGATGGGCATCAGGAAGTTGC TGATGTCGCACTACA GCTTGCCAAGTACTGCATAGACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTGCTCAGTACCGACATCACCGGGAGGGCTCTACCGGACTCCTCTCGGCCGCCTGATATTCAAAACCGATGAGATGGCTCAGGTGGTGCAAGCGCCTGATGTTGTAAAAAACAAGGTGTCCTTCTCTGTCTTTGGTTTCGATGGTGCGGTATCTCTGAAAGGCAAGCTG AATGTGCTGGATGGTAAGTGGATTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCT CCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGA ]
[+] EMBL BM421494 [ AGGTGTCCTTCTCTGTCTTTGGTTTCGATGGTCCGGTATCTCTGAAAGGCAAGCTG AATGTGCTGGATGGTAAGTGGATTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCTCCCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCA CAGGCAATGTTTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCCCCATANCCCTGATGCTACGACAATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATC AAATGAC AAATGTTTGTAGTTCNCTTGTGATTAAaaaaaaaa ]
[+] EMBL AU092931 [ TGAAAGNCAAGCTGAAATGTGCTGGATGGTAAGTGGATTCAGGTNATATTCGAGCCACCAGAAGTGAAGGTAGGCT CCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAACGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGCAATGTTTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACAATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCAAAATNACAAAATGTTTGTAGTT TTTGTGATTAATGTGATGGTTAAATTGTCCAGACTAAaaaaaa ]
[+] EMBL AU101738 [ TCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGNAATGTTTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACAATATGTTTGTGTGTANAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCANAATNACAAAATGTTTGTAGTT TTTGTGATTAATGTGATGGTTAAATTGTCCAGACTAATGAGCATGGTTATGGATTTTTGGTGAACCCTGCAAANA]
consensusID : consensus_11784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence
[GCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGNCGCACCTCCATCGGCCGCCGCTCTCCGGCGCGTNCGCCGTNGNCGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCGCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGCTGCCCAAAGATGGGCATCAGGAAGTTGCTGATGTCGACTACAGCTTGCAAGTACTGCATAGCGTCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGAGGTGTGACTGTCAGACCGCATACCGNAGGNTCTACCGACTCTCTCGGCGCTGATATNAAACCGATAGTGCTAGGTGGTGAAGGCTGATGTG]
[+] EMBL C28406 [GCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGNCGCACCTCCATCGGCCGCCGCTCTCCGGCGCGTNCGCCGTNGNCGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCGCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGCTGCCCAAAGATGGGCATCAGGAAGTTGCTGATGTCGACTACAGCTTGCAAGTACTGCATAGCGTCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGAGGTGTGACTGTCAGACCGCATACCGNAGGNTCTACCGACTCTCTCGGCGCTGATATNAAACCGATAGTGCTAGGTGGTGAAGGCTGATGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11784#0 CCGCCCACGCTTATCACCACACACAGACACAGAAGGAAATGTCGGCTTCTGCGGCGCCCA 60
consensus_11784#1 --------------------------------------------GCTTCTGCGGCGCCCA 16
****************
consensus_11784#0 CGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCCTCGCC 120
consensus_11784#1 CGCACATCCGCTTCTCCTCCGNCGCACCTCCATCGGCCGCCGCTCTCCGGCGCGTNCGCC 76
********************* ****************************** ****
consensus_11784#0 GCCGGTGCGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGC 180
consensus_11784#1 GTNG--NCGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCG-- 132
* * **************************************************
consensus_11784#0 CTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGCTGC 240
consensus_11784#1 CTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGCTGC 192
************************************************************
consensus_11784#0 CCAAAGATGGGCATCAGGAAGTTGCTGATGTCGCACTACAGCTTGCCAAGTACTGCATAG 300
consensus_11784#1 CCAAAGATGGGCATCAGGAAGTTGCTGATGTCG-ACTACAGCTTGC-AAGTACTGCATAG 250
********************************* ************ *************
consensus_11784#0 ACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTGCTCAGTAC 360
consensus_11784#1 C--GTCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGAGG--TGTG-ACTG-TCAG-AC 303
********************************** * **** **** **** **
consensus_11784#0 CGACATCACCGGGAGGGCTCTACCGGACTCCTCTCGGCCGCCTGATATTCAAAACCGATG 420
consensus_11784#1 CG-CAT-ACCGN--AGGNTCTACCGA--CTCTCTCGGC--GCTGATATN--AAACCGATA 353
** *** **** ** ******* ******** ******* ********
consensus_11784#0 AGATGGCTCAGGTGGTGCAAGCGCCTGATGTTGTAAAAAACAAGGTGTCCTTCTCTGTCT 480
consensus_11784#1 GTG----CTAGGTGGTGAAGGC---TGATGTG---------------------------- 378
******** * ** ******
consensus_11784#0 TTGGTTTCGATGGTGCGGTATCTCTGAAAGGCAAGCTGAATGTGCTGGATGGTAAGTGGA 540
consensus_11784#1 ------------------------------------------------------------
consensus_11784#0 TTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCTCCCTGGGGTTTCAGTATGGTG 600
consensus_11784#1 ------------------------------------------------------------
consensus_11784#0 GCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAG 660
consensus_11784#1 ------------------------------------------------------------
consensus_11784#0 GATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGCAATGTT 720
consensus_11784#1 ------------------------------------------------------------
consensus_11784#0 TGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACA 780
consensus_11784#1 ------------------------------------------------------------
consensus_11784#0 ATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGT 840
consensus_11784#1 ------------------------------------------------------------
consensus_11784#0 AGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCAAAATGACAAAA 900
consensus_11784#1 ------------------------------------------------------------
consensus_11784#0 TGTTTGTAGTTTTTGTGATTAATGTGATGGTTAAATTGTCCAGACTAATGAGCATGGTTA 960
consensus_11784#1 ------------------------------------------------------------
consensus_11784#0 TGGATTTTTGGTGAACCCTGCAAANA 986
consensus_11784#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||