These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 986 fasta sequence [CCGCCCACGCTTATCACCACACACAGACACAGAAGGAAATGTCGGCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCCTCGCCGCCGGT-G-CGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGC-TGCCCAAAGATGGGCATCAGGAAGTTGC-TGATGTCGCACTACA-GCTTGCCAAGTACTGCATAGACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTGCTCAGTACCGACATCACCGGGAGGGCTCTACCGGACTCCTCTCGGCCGCCTGATATTCAAAACCGATGAGATGGCTCAGGTGGTGCAAGCGCCTGATGTTGTAAAAAACAAGGTGTCCTTCTCTGTCTTTGGTTTCGATGGTGCGGTATCTCTGAAAGGCAAGCTG-AATGTGCTGGATGGTAAGTGGATTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCT-CCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGCAATGTTTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACAATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCAAAATGACAAAATGTTTGTAGTT--TTTGTGATTAATGTGATGGTTAAATTGTCCAGACTAATGAGCATGGTTATGGATTTTTGGTGAACCCTGCAAANA] [+] EMBL OSS11245A [CCGCCCACGCGTCCGACCACACACAGACACAGAAGGAAATGTCGGCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCTNCGCCG GNTNGNCGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGCTTGCCCAAAGATGGGCATCAGGAAGTTGCTTGATGTCGNACTAAANGTTTGCCAAGTACTGAATAGACGNTC ] [+] EMBL AK059884 [ CTTATCACCACACACAGACACAGAAGGAAATGTCGGCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCCTCGCCGCCGGT G CGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGC TGCCCAAAGATGGGCATCAGGAAGTTGC TGATGTCGCACTACA GCTTGCCAAGTACTGCATAGACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTGCTCAGTACCGACATCACCGGGAGGGCTCTACCGGACTCCTCTCGGCCGCCTGATATTCAAAACCGATGAGATGGCTCAGGTGGTGCAAGCGCCTGATGTTGTAAAAAACAAGGTGTCCTTCTCTGTCTTTGGTTTCGATAGTGCGGTATCTCTGAAAGGCAAGCTG AATGTGCTGGATGGTAAGTGGATTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCT CCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGCAATGTTTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACAATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCAAAATGACAAAATGTTTGTAGTT TTTGTGATTAATGTGATGGTTAAATTGTCCAGACTAATGAGCATGGTTATGG ] [+] EMBL AK104482 [ CTTATCACCACACACAGACACAGAAGGAAATGTCGGCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCCTCGCCGCCGGT G CGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGC TGCCCAAAGATGGGCATCAGGAAGTTGC TGATGTCGCACTACA GCTTGCCAAGTACTGCATAGACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTGCTCAGTACCGACATCACCGGGAGGGCTCTACCGGACTCCTCTCGGCCGCCTGATATTCAAAACCGATGAGATGGCTCAGGTGGTGCAAGCGCCTGATGTTGTAAAAAACAAGGTGTCCTTCTCTGTCTTTGGTTTCGATGGTGCGGTATCTCTGAAAGGCAAGCTG AATGTGCTGGATGGTAAGTGGATTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCT CCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGCAATGTTTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACAATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCAAAATGACAAAATGTTTGTAGTT TTTGTGATTAATGTGATGGTTAAAT ] [+] EMBL OSS11616A [ GGCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCTTCGCCNCTNGN C NGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGC TGCCCAAAGATGGGCATCAGGAAGTTGC TGATGTCG ACTACA GTTTGCCAAGTACTGCATAGACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTTCTCAGTACCGANAT AACGGGAGGGNTNTACCGGACTTCTTTNGGCCG CTGATATTAAAAACC ] [+] EMBL BF430886 [ CATCGGCCGCCGCTCTCCGGCGGCCTCGCCGCCGGT G CGCCACACCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGC TGCCCAAAGATGGGCATCAGGAAGTTGC TGATGTCGCACTACA GCTTGCCAAGTACTGCATAGACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTGCTCAGTACCGACATCACCGGGAGGGCTCTACCGGACTCCTCTCGGCCGCCTGATATTCAAAACCGATGAGATGGCTCAGGTGGTGCAAGCGCCTGATGTTGTAAAAAACAAGGTGTCCTTCTCTGTCTTTGGTTTCGATGGTGCGGTATCTCTGAAAGGCAAGCTG AATGTGCTGGATGGTAAGTGGATTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCT CCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGA ] [+] EMBL BM421494 [ AGGTGTCCTTCTCTGTCTTTGGTTTCGATGGTCCGGTATCTCTGAAAGGCAAGCTG AATGTGCTGGATGGTAAGTGGATTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCTCCCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCA CAGGCAATGTTTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCCCCATANCCCTGATGCTACGACAATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATC AAATGAC AAATGTTTGTAGTTCNCTTGTGATTAAaaaaaaaa ] [+] EMBL AU092931 [ TGAAAGNCAAGCTGAAATGTGCTGGATGGTAAGTGGATTCAGGTNATATTCGAGCCACCAGAAGTGAAGGTAGGCT CCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAACGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGCAATGTTTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACAATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCAAAATNACAAAATGTTTGTAGTT TTTGTGATTAATGTGATGGTTAAATTGTCCAGACTAAaaaaaa ] [+] EMBL AU101738 [ TCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGNAATGTTTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACAATATGTTTGTGTGTANAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCANAATNACAAAATGTTTGTAGTT TTTGTGATTAATGTGATGGTTAAATTGTCCAGACTAATGAGCATGGTTATGGATTTTTGGTGAACCCTGCAAANA] consensusID : consensus_11784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [GCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGNCGCACCTCCATCGGCCGCCGCTCTCCGGCGCGTNCGCCGTNGNCGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCGCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGCTGCCCAAAGATGGGCATCAGGAAGTTGCTGATGTCGACTACAGCTTGCAAGTACTGCATAGCGTCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGAGGTGTGACTGTCAGACCGCATACCGNAGGNTCTACCGACTCTCTCGGCGCTGATATNAAACCGATAGTGCTAGGTGGTGAAGGCTGATGTG] [+] EMBL C28406 [GCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGNCGCACCTCCATCGGCCGCCGCTCTCCGGCGCGTNCGCCGTNGNCGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCGCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGCTGCCCAAAGATGGGCATCAGGAAGTTGCTGATGTCGACTACAGCTTGCAAGTACTGCATAGCGTCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGAGGTGTGACTGTCAGACCGCATACCGNAGGNTCTACCGACTCTCTCGGCGCTGATATNAAACCGATAGTGCTAGGTGGTGAAGGCTGATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11784#0 CCGCCCACGCTTATCACCACACACAGACACAGAAGGAAATGTCGGCTTCTGCGGCGCCCA 60 consensus_11784#1 --------------------------------------------GCTTCTGCGGCGCCCA 16 **************** consensus_11784#0 CGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCCTCGCC 120 consensus_11784#1 CGCACATCCGCTTCTCCTCCGNCGCACCTCCATCGGCCGCCGCTCTCCGGCGCGTNCGCC 76 ********************* ****************************** **** consensus_11784#0 GCCGGTGCGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGC 180 consensus_11784#1 GTNG--NCGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCG-- 132 * * ************************************************** consensus_11784#0 CTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGCTGC 240 consensus_11784#1 CTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGCTGC 192 ************************************************************ consensus_11784#0 CCAAAGATGGGCATCAGGAAGTTGCTGATGTCGCACTACAGCTTGCCAAGTACTGCATAG 300 consensus_11784#1 CCAAAGATGGGCATCAGGAAGTTGCTGATGTCG-ACTACAGCTTGC-AAGTACTGCATAG 250 ********************************* ************ ************* consensus_11784#0 ACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTGCTCAGTAC 360 consensus_11784#1 C--GTCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGAGG--TGTG-ACTG-TCAG-AC 303 ********************************** * **** **** **** ** consensus_11784#0 CGACATCACCGGGAGGGCTCTACCGGACTCCTCTCGGCCGCCTGATATTCAAAACCGATG 420 consensus_11784#1 CG-CAT-ACCGN--AGGNTCTACCGA--CTCTCTCGGC--GCTGATATN--AAACCGATA 353 ** *** **** ** ******* ******** ******* ******** consensus_11784#0 AGATGGCTCAGGTGGTGCAAGCGCCTGATGTTGTAAAAAACAAGGTGTCCTTCTCTGTCT 480 consensus_11784#1 GTG----CTAGGTGGTGAAGGC---TGATGTG---------------------------- 378 ******** * ** ****** consensus_11784#0 TTGGTTTCGATGGTGCGGTATCTCTGAAAGGCAAGCTGAATGTGCTGGATGGTAAGTGGA 540 consensus_11784#1 ------------------------------------------------------------ consensus_11784#0 TTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCTCCCTGGGGTTTCAGTATGGTG 600 consensus_11784#1 ------------------------------------------------------------ consensus_11784#0 GCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAG 660 consensus_11784#1 ------------------------------------------------------------ consensus_11784#0 GATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGCAATGTT 720 consensus_11784#1 ------------------------------------------------------------ consensus_11784#0 TGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACA 780 consensus_11784#1 ------------------------------------------------------------ consensus_11784#0 ATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGT 840 consensus_11784#1 ------------------------------------------------------------ consensus_11784#0 AGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCAAAATGACAAAA 900 consensus_11784#1 ------------------------------------------------------------ consensus_11784#0 TGTTTGTAGTTTTTGTGATTAATGTGATGGTTAAATTGTCCAGACTAATGAGCATGGTTA 960 consensus_11784#1 ------------------------------------------------------------ consensus_11784#0 TGGATTTTTGGTGAACCCTGCAAANA 986 consensus_11784#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||