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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1031 fasta sequence
[GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAG-CCCCGGGG-CCGC-GCCCAC-AAGCGGATGCAGTAC-AACCGCCGCTTCGTCACC-GCC-GTCGTC-GGCTTCGGCAAGAAGCGCGGGC-C-AAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAAAAAAAAAATAAAGAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAANCCTTTGGGGGGGGGCCCGGCCCCAAATTCCCCTTTTAGGGAGTCTTTTTCCCCCCCCTCACTGCCCGTCTTTTTAAACGTGGTAATGGGGAAACCCCTGGGGGTCCCAACTTAAATGGCTTTGAAAAAATTCCCCTTTTGCCCAGTTGGCGAATAAGCAAAAAGCCCCCCCAGATGGCCTTCCAAAATTTGCCCCCCTAATTGGATATGGGCACCCCCTTTCCGGCCCTTAAACCCGGGGGGTGGGTGGTTCCCCGCAAGTACCGTTACATTGCAAGGCCTTAACGCCGTTCTTTTGGTTTTTTCCTTTTTTTTCGACCGTTCCGCGTTTTCCCGGAAGGTTTATATGGGGGCTCTTTTGGGTCCCATTAAGGCTTCCGGCCCTGCCCAAAAATTTTTTGGGGAGGTTCCGTTGGGCCCCCCCTCTAAACGTTTCCCTCTTACGGAACCCCTCTTTAAAGGGGTTTTCCAAAGAAAAACACCATTTGGGTTTTTATAAAGGGTTCGCCTGGCTTTGTAAAAGCGTTTACAATTACCATTAAAAT]
[+] EMBL CF299209 [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAG CGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAG CCCCGGGG CCGC GCCCAC AAGCGGATGCAGTAC AACCGCCGTTTCGTCACC GCC GTCGTC GGCTTCGGCAAGAAGCGCGGGC C AAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTAAAAAAAAAA ]
[+] EMBL BE039801 [ tGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAG CCCCGGGG CCGC GCCCAC AAGCGGATGCAGTAC AACCGCCGCTTCGTCACC GCC GTCGTC GGCTTCGGCAAGAAGCGCGGGC C AAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAAAAAAAAAATAAAGAATTC ]
[+] EMBL BE040739 [ TCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAG CCCCGGGG CCGC GCCCAC AAGCGGATGCAGTAC AACCGCCGCTTCGTCACC GCC GTCGTC GGCTTCGGCAAGAAGCGCGGGC C AAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAANCCTTTGGGGGGGGGCCCGGCCCCAAATTCCCCTTTTAGGGAGTCTTTTTCCCCCCCCTCACTGCCCGTCTTTTTAAACGTGGTAATGGGGAAACCCCTGGGGGTCCCAACTTAAATGGCTTTGAAAAAATTCCCCTTTTGCCCAGTTGGCGAATAAGCAAAAAGCCCCCCCAGATGGCCTTCCAAAATTTGCCCCCCTAATTGGATATGGGCACCCCCTTTCCGGCCCTTAAACCCGGGGGGTGGGTGGTTCCCCGCAAGTACCGTTACATTGCAAGGCCTTAACGCCGTTCTTTTGGTTTTTTCCTTTTTTTTCGACCGTTCCGCGTTTTCCCGGAAGGTTTATATGGGGGCTCTTTTGGGTCCCATTAAGGCTTCCGGCCCTGCCCAAAAATTTTTTGGGGAGGTTCCGTTGGGCCCCCCCTCTAAACGTTTCCCTCTTACGGAACCCCTCTTTAAAGGGGTTTTCCAAAGAAAAACACCATTTGGGTTTTTATAAAGGGTTCGCCTGGCTTTGTAAAAGCGTTTACAATTACCATTAAAAT]
[+] EMBL BI794991 [ ACAAGAAGAAGAAGCCCCCGGGGCCCGCAGCCCACAAAGCGGATGCAGTACAAACCGCCGCTTCGTCACCAGCCAGTCGTCAGGCTTCGGCAAGAAGCGCGGGCACAAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAA ]
[-] EMBL CF299210 [ TTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTAAAAAAAAAAA ]
consensusID : consensus_11786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 475 fasta sequence
[GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAGTGTTCAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCGTTGA]
[-] EMBL CF331966 [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAGTGTTCAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCGTTGA]
[+] EMBL CF331965 [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAGTGTTCAAAAAAA ]
[+] EMBL C27939 [ GCCGAA GTGGCGAA NAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTNTCATTAATTAATACTCATGGTTCCCTTTTTTTNTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATNTTTGGTATTGAACTGATGTCACTGTAATACCNATGATATCTCTATGGNTGGTGTTAAGATC ]
[+] EMBL AU161110 [ GAAGGTGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11786#0 GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCA 60
consensus_11786#1 GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCA 60
************************************************************
consensus_11786#0 TGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGG 120
consensus_11786#1 TGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGG 120
************************************************************
consensus_11786#0 TGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACA 180
consensus_11786#1 TGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACA 180
************************************************************
consensus_11786#0 ACCGCCGCTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCG 240
consensus_11786#1 ACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCG 240
******* ****************************************************
consensus_11786#0 AGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCC 300
consensus_11786#1 AGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCC 300
********************************** *************************
consensus_11786#0 CTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACT 360
consensus_11786#1 CTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACT 360
************************************************************
consensus_11786#0 GATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAAAAAAAA 420
consensus_11786#1 GATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTT---------AT 411
***************************************** ****** *
consensus_11786#0 AATAAAGAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAA 480
consensus_11786#1 CGTCAAGTGTTCAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCG 471
* *** *********************** **** * * * *
consensus_11786#0 AAAAAANCCTTTGGGGGGGGGCCCGGCCCCAAATTCCCCTTTTAGGGAGTCTTTTTCCCC 540
consensus_11786#1 TTGA-------------------------------------------------------- 475
*
consensus_11786#0 CCCCTCACTGCCCGTCTTTTTAAACGTGGTAATGGGGAAACCCCTGGGGGTCCCAACTTA 600
consensus_11786#1 ------------------------------------------------------------
consensus_11786#0 AATGGCTTTGAAAAAATTCCCCTTTTGCCCAGTTGGCGAATAAGCAAAAAGCCCCCCCAG 660
consensus_11786#1 ------------------------------------------------------------
consensus_11786#0 ATGGCCTTCCAAAATTTGCCCCCCTAATTGGATATGGGCACCCCCTTTCCGGCCCTTAAA 720
consensus_11786#1 ------------------------------------------------------------
consensus_11786#0 CCCGGGGGGTGGGTGGTTCCCCGCAAGTACCGTTACATTGCAAGGCCTTAACGCCGTTCT 780
consensus_11786#1 ------------------------------------------------------------
consensus_11786#0 TTTGGTTTTTTCCTTTTTTTTCGACCGTTCCGCGTTTTCCCGGAAGGTTTATATGGGGGC 840
consensus_11786#1 ------------------------------------------------------------
consensus_11786#0 TCTTTTGGGTCCCATTAAGGCTTCCGGCCCTGCCCAAAAATTTTTTGGGGAGGTTCCGTT 900
consensus_11786#1 ------------------------------------------------------------
consensus_11786#0 GGGCCCCCCCTCTAAACGTTTCCCTCTTACGGAACCCCTCTTTAAAGGGGTTTTCCAAAG 960
consensus_11786#1 ------------------------------------------------------------
consensus_11786#0 AAAAACACCATTTGGGTTTTTATAAAGGGTTCGCCTGGCTTTGTAAAAGCGTTTACAATT 1020
consensus_11786#1 ------------------------------------------------------------
consensus_11786#0 ACCATTAAAAT 1031
consensus_11786#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||