These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11787#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1463 fasta sequence [CTCGGGCGGCGGCGGCAATGGCGGAAGAGGGGAGGAGCGGCGGCGTCGCCGGAGACGGCGTCCGGGTGTGCGTCACCGGAGGCGCCGGCTTCATCGCCTCGTGGCTCGTGAAGAAGCTCCTCGAGAGAGGCTGCATCGTCCATGCCACGCTGCGAAGCATGGGAGATGAGGAGAAGGCCGGGCTGCTCCGGCGGCTCGTCCCCGGCGCGGCGGAGCGGCTGCGGCTGTTCGAGGCCGATCTCTTCGACGCCGCCACCTTCGCGCCGGCGATCGCCGGCTGCCAGTTCGTCTTCCTCATCGCCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAGTGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCATCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCGGCGCCGGCGTCGGCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACTACCCACTCCGGAGCGCCCACTTCGACGTGATCTCTCCTCCTCTGTTCTTCCTCCTCCAATCAAGAACACGATGAAGCAAAAAACAGAAGAAACCAAATTAAACATTGTTTTGCAGAAGTACGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCCTGGGCTACAACGACGGCGAGGGCCGGGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTCGCCGGCGACACGGTCCTCGGCCGCGCCCCGGAGACGCTGGAGAACGCCGTGTCGCCGGTGTCCCGGAACGAGCCGTCCTTCGCGTTCCTGAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCACGCCGACGACGTCTGCGACGCGCTCGTCTTCTGCATGGATCAGCCGTCGCTCGCCGGCCGCTTCCTCTGCTCCGCCGCCTACCCGACCATCCACGACATCGTCGAACACTTCGCCGCCAAGTACCCTCACCTCGACGTCCTCAAAGAGCCGGAGAGGGAGGTGGCGAGGGTGCAGCCGGCGGCAGACAAGCTGGGTGAGCTGGGGTTCAGGTACAAGTACGGCATGGAGGAGATACTCGACGGCAGCGTCGGCTGCGCGGCGAGGCTGGGTTACATCGACGCAGCCAAGCTCAGGCCGCAGGAAGGATGAATCTGCTACAGATTTGCAGGATGAAGAAGATGGATGATATTTGTTCGGTTTTGAACAAGTTTTTGGTGTTTGTTTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCACTTGAGTTAAAAAAAATGTTTCATTCGGTAATTCGGGCTAATTTGCTATTGTTAGCACAAGCCTGAACTGGTATTACCATTTAAAAAAAAA] [+] EMBL AK065812 [CTCGGGCGGCGGCGGCAATGGCGGAAGAGGGGAGGAGCGGCGGCGTCGCCGGAGACGGCGTCCGGGTGTGCGTCACCGGAGGCGCCGGCTTCATCGCCTCGTGGCTCGTGAAGAAGCTCCTCGAGAGAGGCTGCATCGTCCATGCCACGCTGCGAAGCATGGGAGATGAGGAGAAGGCCGGGCTGCTCCGGCGGCTCGTCCCCGGCGCGGCGGAGCGGCTGCGGCTGTTCGAGGCCGATCTCTTCGACGCCGCCACCTTCGCGCCGGCGATCGCCGGCTGCCAGTTCGTCTTCCTCATCGCCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAGTGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCATCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCGGCGCCGGCGTCGGCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACTACCCACTCCGGAGCGCCCACTTCGACGTGATCTCTCCTCCTCTGTTCTTCCTCCTCCAATCAAGAACACGATGAAGCAAAAAACAGAAGAAACCAAATTAAACATTGTTTTGCAGAAGTACGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCCTGGGCTACAACGACGGCGAGGGCCGGGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTCGCCGGCGACACGGTCCTCGGCCGCGCCCCGGAGACGCTGGAGAACGCCGTGTCGCCGGTGTCCCGGAACGAGCCGTCCTTCGCGTTCCTGAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCACGCCGACGACGTCTGCGACGCGCTCGTCTTCTGCATGGATCAGCCGTCGCTCGCCGGCCGCTTCCTCTGCTCCGCCGCCTACCCGACCATCCACGACATCGTCGAACACTTCGCCGCCAAGTACCCTCACCTCGACGTCCTCGAAGAGCCGGAGAGGGAGGTGGCGAGGGTGCAGCCGGCGGCAGACAAGCTGGGTGAGCTGGGGTTCAGGTACAAGTACGGCATGGAGGAGATACTCGACGGCAGCGTCGGCTGCGCGGCGAGGCTGGGTTACATCGACGCAGCCAAGCTCAGGCCGCAGGAAGGATGAATCTGCTACAGATTTGCAGGATGAAGAAGATGGATGATATTTGTTCGGTTTTGAACAAGTTTTTGGTGTTTGTTTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGG ] [+] EMBL OSYK29 [ GAGGGCCGGGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTNGNNGGCGACACGGTCCTCGGCNGNGCCCCGGAGACGCTGGAGAACGNCGTNTNGCCGGTNTCCCGGAACGAGCCGTCCTTCGCNTTCCTAAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCACGCCGACGACGTCTGCAACGCGCTCGTNTTCT ] [-] EMBL AW070001 [ ggCAGGTACCCTCACCTCGACGTCCTCAAAGAGCCGGAGAGGGAGGTGGCGAGGGTGCAGCCGGCGGCAGACAAGCTGGGTGAGCTGGGGTTCAGGTACAtcggccgcg ] [+] EMBL BI813107 [ GTACCCTCACCTCGACGTCCTCAAAGAGCCGGAGAGGGAGGTGGCGAGGGTGCAGCCGGC GCGGACAAGCTGGGTGAGCTGGGGTTCAGGTACAAGTACGGCATGGAGGAGATACTCGAC GCAGCGTCGGCTGCGCGGCGAGGCTGGGTTACATCGACGCAGCCAAGCTCAGGCCGCAGGAAGGATGAATCTGCTACAGATTTGCAGGATGAAGAAGATGGATGATATTTGTTCGGTTTTGAACAAGTTTTTGGTGTTTGTTTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCACTTGAGTTAAAAAAAA ] [+] EMBL AU071102 [ CTCGACGGCAGCGTCGG TGCGCGGCGAGGCTGGGTTACATCGACGCAGCCAAGCTCAGGCCGCAGGAAGGATGAATCTGCTACAGATTTGCAGGATGAAGAAGATGGATGATATTTGTTCGGTTTTGAACAAGTTTTTGGTGTTTGTTTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCACTTGAGTTATCAAGCGTGTTTCATTCGGTAATTCGGGCTAATTTGCTATTGTTAGCACAAGCCTGAACTGGTATTACCATTTAAAAAAAAA] [+] EMBL CF336572 [ TTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCAa ] [-] EMBL CF336573 [ TGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCAaa ] consensusID : consensus_11787#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 788 fasta sequence [CGGCACTGGCGGAAGAGGGGAGGAGCGGCGGCGTCGCCGGAGACGGCGTCCGGGTGTGCGTCACCGGAGGCGCCGGCTTCATCGCCTCGTGGCTCGTGAAGAAGCTCCTCGAGAGAGGCTGCATCGTCCATGCCACGCTGCGAAGCATGGGAGATGAGGAGAAGGCCGGGCTGCTCCGGCGGCTCGTCCCCGGCGCGGCGGAGCGGCTGCGGCTGTTCGAGGCCGATCTCTTCGACGCCGCCACCTTCGCGCCGGCGATCGCCGGCTGCCAGTTCGTCTTCCTCATCGCCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAGTGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCATCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCG-GCGCCGGCGTCGGCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACTACCCACTCCGGAGCGCCCACTTCGACAAGTACGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCCTGGGCTACAACGACGGCGAGGGCCGGGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTCGCCGGCGACACGGTCCTCGGCCGCGCCCCGGAGACGCTGGAGAACGCCGTGTCGCCGGTGTCCCGGAACGAGCCGTCCTTCGCGTTCCTGAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCAC] [+] EMBL CB667654 [CGGCACTGGCGGAAGAGGGGAGGAGCGGCGGCGTCGCCGGAGACGGCGTCCGGGTGTGCGTCACCGGAGGCGCCGGCTTCATCGCCTCGTGGCTCGTGAAGAAGCTCCTCGAGAGAGGCTGCATCGTCCATGCCACGCTGCGAAGCATGGGAGATGAGGAGAAGGCCGGGCTGCTCCGGCGGCTCGTCCCCGGCGCGGCGGAGCGGCTGCGGCTGTTCGAGGCCGATCTCTTCGACGCCGCCACCTTCGCGCCGGCGATCGCCGGCTGCCAGTTCGTCTTCCTCATCGCCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAGTGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCATCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCG GCGCCGGCGTCGGCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACTACCCACTCCGGAGCGCCCACTTCGACAAGTACGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCCTGGGCTACAACGACGGCGAGGGCCGGGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTCGCCGGCGACACGGTCCTCGGCCGCGCCCCGGAGACGCTGGAGAACGCCGTGTCGCCGGTGTCCCGGAACGAGCCGTCCTTCGCGTTCCTGAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCAC] [+] EMBL CF322425 [ TTCGTCTTCCTCATCGCCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAGTGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCATCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCGNGCGCCGGCGTCGGCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACTACCCACTCCGGAGCGCCCACTTCGACAAGTACGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11787#0 CTCGGGCGGCGGCGGCAATGGCGGAAGAGGGGAGGAGCGGCGGCGTCGCCGGAGACGGCG 60 consensus_11787#1 ------------CGGCACTGGCGGAAGAGGGGAGGAGCGGCGGCGTCGCCGGAGACGGCG 48 ***** ****************************************** consensus_11787#0 TCCGGGTGTGCGTCACCGGAGGCGCCGGCTTCATCGCCTCGTGGCTCGTGAAGAAGCTCC 120 consensus_11787#1 TCCGGGTGTGCGTCACCGGAGGCGCCGGCTTCATCGCCTCGTGGCTCGTGAAGAAGCTCC 108 ************************************************************ consensus_11787#0 TCGAGAGAGGCTGCATCGTCCATGCCACGCTGCGAAGCATGGGAGATGAGGAGAAGGCCG 180 consensus_11787#1 TCGAGAGAGGCTGCATCGTCCATGCCACGCTGCGAAGCATGGGAGATGAGGAGAAGGCCG 168 ************************************************************ consensus_11787#0 GGCTGCTCCGGCGGCTCGTCCCCGGCGCGGCGGAGCGGCTGCGGCTGTTCGAGGCCGATC 240 consensus_11787#1 GGCTGCTCCGGCGGCTCGTCCCCGGCGCGGCGGAGCGGCTGCGGCTGTTCGAGGCCGATC 228 ************************************************************ consensus_11787#0 TCTTCGACGCCGCCACCTTCGCGCCGGCGATCGCCGGCTGCCAGTTCGTCTTCCTCATCG 300 consensus_11787#1 TCTTCGACGCCGCCACCTTCGCGCCGGCGATCGCCGGCTGCCAGTTCGTCTTCCTCATCG 288 ************************************************************ consensus_11787#0 CCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAG 360 consensus_11787#1 CCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAG 348 ************************************************************ consensus_11787#0 TGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCA 420 consensus_11787#1 TGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCA 408 ************************************************************ consensus_11787#0 TCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCGGCGCCGGCGTCG 480 consensus_11787#1 TCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCGGCGCCGGCGTCG 468 ************************************************************ consensus_11787#0 GCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACT 540 consensus_11787#1 GCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACT 528 ************************************************************ consensus_11787#0 ACCCACTCCGGAGCGCCCACTTCGACGTGATCTCTCCTCCTCTGTTCTTCCTCCTCCAAT 600 consensus_11787#1 ACCCACTCCGGAGCGCCCACTTCGAC---------------------------------- 554 ************************** consensus_11787#0 CAAGAACACGATGAAGCAAAAAACAGAAGAAACCAAATTAAACATTGTTTTGCAGAAGTA 660 consensus_11787#1 -------------------------------------------------------AAGTA 559 ***** consensus_11787#0 CGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCCTGGGCTACAACGACGGCGAGGGCCG 720 consensus_11787#1 CGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCCTGGGCTACAACGACGGCGAGGGCCG 619 ************************************************************ consensus_11787#0 GGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTCGCCGGCGACACGGTCCTCGGCCG 780 consensus_11787#1 GGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTCGCCGGCGACACGGTCCTCGGCCG 679 ************************************************************ consensus_11787#0 CGCCCCGGAGACGCTGGAGAACGCCGTGTCGCCGGTGTCCCGGAACGAGCCGTCCTTCGC 840 consensus_11787#1 CGCCCCGGAGACGCTGGAGAACGCCGTGTCGCCGGTGTCCCGGAACGAGCCGTCCTTCGC 739 ************************************************************ consensus_11787#0 GTTCCTGAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCACGCCGACGACGT 900 consensus_11787#1 GTTCCTGAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCAC----------- 788 ************************************************* consensus_11787#0 CTGCGACGCGCTCGTCTTCTGCATGGATCAGCCGTCGCTCGCCGGCCGCTTCCTCTGCTC 960 consensus_11787#1 ------------------------------------------------------------ consensus_11787#0 CGCCGCCTACCCGACCATCCACGACATCGTCGAACACTTCGCCGCCAAGTACCCTCACCT 1020 consensus_11787#1 ------------------------------------------------------------ consensus_11787#0 CGACGTCCTCAAAGAGCCGGAGAGGGAGGTGGCGAGGGTGCAGCCGGCGGCAGACAAGCT 1080 consensus_11787#1 ------------------------------------------------------------ consensus_11787#0 GGGTGAGCTGGGGTTCAGGTACAAGTACGGCATGGAGGAGATACTCGACGGCAGCGTCGG 1140 consensus_11787#1 ------------------------------------------------------------ consensus_11787#0 CTGCGCGGCGAGGCTGGGTTACATCGACGCAGCCAAGCTCAGGCCGCAGGAAGGATGAAT 1200 consensus_11787#1 ------------------------------------------------------------ consensus_11787#0 CTGCTACAGATTTGCAGGATGAAGAAGATGGATGATATTTGTTCGGTTTTGAACAAGTTT 1260 consensus_11787#1 ------------------------------------------------------------ consensus_11787#0 TTGGTGTTTGTTTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCA 1320 consensus_11787#1 ------------------------------------------------------------ consensus_11787#0 TTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCACTTGAGTT 1380 consensus_11787#1 ------------------------------------------------------------ consensus_11787#0 AAAAAAAATGTTTCATTCGGTAATTCGGGCTAATTTGCTATTGTTAGCACAAGCCTGAAC 1440 consensus_11787#1 ------------------------------------------------------------ consensus_11787#0 TGGTATTACCATTTAAAAAAAAA 1463 consensus_11787#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||