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Oryza sativa
cluster # 11790 cluster # 11790       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11790#0 length = 2162 sequences # 7  
consensus_11790#1 length = 380 sequences # 1  
consensus_11790#2 length = 309 sequences # 1  

consensusID : consensus_11790#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2162
fasta sequence
                              [ATCAAATCAAAATCGAAACCAAACCTCCCCAAATTTCCCCAGAAACCCTAACCCTAACCCCACCCGGCGCCATGGATCTCCTCCAGTCGTCCTACACGCCGG-ACGACGAGGACGACGACGAGCAGCAGCCCCTCTCCTCGCCGGACGCCTCGCCGCTCCGCCTCCCCGCCAAGTCGGCCGCCCCCGCCGTCGACGACACGGCGCTCGCGCTCTCCGCCGCCGCCGCGTCCACCTCCCGCCCGCTCGACCCCTCCCTCCACCTCGTCCCCTTTAACCCCACCGCCGACCAGCTCTGGGCGCCCGTCCTCGGGCCCCAGCACCCCCACGCCCCCATCTCCTCCGCCTCCGGCAACCGCAACCACAAGCTCGGCCACGTCGAGGACGCCGCCGTCCTCCCCTTCCTCTTCGACGAGCAGTACAACACCTTCCACCGCTTCGGCTACGCCGCCGACCCCTCCGGCCTCCACATCGTCGGCGACGCCCAGCCCTCGGCCGAGCCCGACACCGTCTACAACCTCGCCCCCTCCGAGCACAAGCGCCGCCGCCTGCAGTCCAAGGACGAGGAGGGCGCCAACCAGGAGCCCCTACCGCCGGAGGCCAAGAACCCGGCGTCCGACGAGTGGATCCTCCGCAACAAGCAGAGCCCCTGGGCCGGCAAGAAGGAGGCACCACCCGCGGAGCTCACTGAAGAGCAGCGTCAGTATGCGGAGGCGCACGCTGCCAAGAAGGCCGAGAAGGAGGCGCGCGGCGAAGGGAAGGGCGAGAAGTCTGATATGGTTGCCAAGAGTACTTTCCATGGGAAGGAGGAGAGGGATTACCAAGGACGGTCATGGATCACACCGCCCAAGGATGCCAAGGCGAGCAACGAGCGCTGCTATATTCCCAAGAGGTGTGTGCA-CGAGTGGGTTGGGCACACCAAGGGGGTCTCGGCGATTAGGTTTTTCCCCAAGTATGGACACCTTTTGCTGTCTGCGAGTATGGATTGTAAGATTAAGATCTGGGATGTGCTCGAGTCGAGGACATGTATGCGGACGTACAT-GGGGCACTCT-AAGGCGGTCAGAGATATATCGTTTT-CTAAT-GATGGGACTAAGTTCTTGAGTGCTGGGTATGACAGGAATATACAGTATTGGGATACTGAGACCGGGCAGGTGATCTCGACCTTCTCTACTGGCAAGGTCCCTTATGTAGTGAAGCTCAACCCGGATGAGGATAAGCAGCATGTTCTCCTCGCTGGGATGAGTGACAAGAAGATTGTGCAGTGGGATATGAAGTCAGGGCAGATAACCCAAGAGTACGACCAGCACTTGGGAGCAGTCAATACCATCACTTTTGTAGATAATAATAGGAGGTTTGTGACATCAAGCGATGACAAGTCGCTTCGTGTGTGGGAGTTCGGCATCCCAGTGGTGATTAAGTATATCAGTGAACCACACATGCATTCAATGCCATCAATATCACTGCACCCGAATTCCAACTGGCTGGCAGCACAGAGCTTGGACAATCAGATATTGATATACAGTACCAAGGAGAGGTTTCAACTTAACAAGAAGAAGCGGTTTGCGGGTCACATTGTGGCAGGTTACGCTTGTCAAGTGAACTTCTCACCAGATGGGAGGTTCGTGATGTCAGGAGATGGTGAAGGTAGTTGCTGGTTCTGGGACTGGAAAAGCTGCAGGAGATTTAAGACGTTGAAGTGCCACAATGGAGTTTGCATTGGATGTGAGTGGCATCCCTTGGAGACTAGCAAGGTTGCAACATGTGGATGGGATGGCGTAATTAAGTACTGGGATTGAAGTTTTGGAAATGTAATGAGAGAGGTTTCTCGAGAATGTCCTGGTTTTGTGGACAAGTTCATGGCAATGCAATTTACAAGGTTTGAACTTCAGGAGATGTTGAAAGCACGCATGTCTATCCAGAAAACTTCAATGTCATCAGGTGAAAACTATACCATGTTTTTAAGCTACCATGTAAGCTCGTTCTGCTATCGAAAGATTGTAATGTACTATGCTATGTATACATACTGGACCAATCAATTTTGAACTGTACGTTACTGCTTACCTGTTTTTGGTTTCAGTTCGTTTATTAATGCCAACATTTGTAGCAGCTCAGAACAAGGCTTGAATACCAGGTTTTATTAGGTAGTTTATCAATCTTTAATCTGT]

[+] EMBL AK073478             [ATCAAATCAAAATCGAAACCAAACCTCCCCAAATTTCCCCAGAAACCCTAACCCTAACCCCACCCGGCGCCATGGATCTCCTCCAGTCGTCCTACACGCCGG ACGACGAGGACGACGACGAGCAGCAGCCCCTCTCCTCGCCGGACGCCTCGCCGCTCCGCCTCCCCGCCAAGTCGGCCGCCCCCGCCGTCGACGACACGGCGCTCGCGCTCTCCGCCGCCGCCGCGTCCACCTCCCGCCCGCTCGACCCCTCCCTCCACCTCGTCCCCTTTAACCCCACCGCCGACCAGCTCTGGGCGCCCGTCCTCGGGCCCCAGCACCCCCACGCCCCCATCTCCTCCGCCTCCGGCAACCGCAACCACAAGCTCGGCCACGTCGAGGACGCCGCCGTCCTCCCCTTCCTCTTCGACGAGCAGTACAACACCTTCCACCGCTTCGGCTACGCCGCCGACCCCTCCGGCCTCCACATCGTCGGCGACGCCCAGCCCTCGGCCGAGCCCGACACCGTCTACAACCTCGCCCCCTCCGAGCACAAGCGCCGCCGCCTGCAGTCCAAGGACGAGGAGGGCGCCAACCAGGAGCCCCTACCGCCGGAGGCCAAGAACCCGGCGTCCGACGAGTGGATCCTCCGCAACAAGCAGAGCCCCTGGGCCGGCAAGAAGGAGGCACCACCCGCGGAGCTCACTGAAGAGCAGCGTCAGTATGCGGAGGCGCACGCTGCCAAGAAGGCCGAGAAGGAGGCGCGCGGCGAAGGGAAGGGCGAGAAGTCTGATATGGTTGCCAAGAGTACTTTCCATGGGAAGGAGGAGAGGGATTACCAAGGACGGTCATGGATCACACCGCCCAAGGATGCCAAGGCGAGCAACGAGCGCTGCTATATTCCCAAGAGGTGTGTGCA CGAGTGGGTTGGGCACACCAAGGGGGTCTCGGCGATTAGGTTTTTCCCCAAGTATGGACACCTTTTGCTGTCTGCGAGTATGGATTGTAAGATTAAGATCTGGGATGTGCTCGAGTCGAGGACATGTATGCGGACGTACAT GGGGCACTCT AAGGCGGTCAGAGATATATCGTTTT CTAAT GATGGGACTAAGTTCTTGAGTGCTGGGTATGACAGGAATATACAGTATTGGGATACTGAGACCGGGCAGGTGATCTCGACCTTCTCTACTGGCAAGGTCCCTTATGTAGTGAAGCTCAACCCGGATGAGGATAAGCAGCATGTTCTCCTCGCTGGGATGAGTGACAAGAAGATTGTGCAGTGGGATATGAAGTCAGGGCAGATAACCCAAGAGTACGACCAGCACTTGGGAGCAGTCAATACCATCACTTTTGTAGATAATAATAGGAGGTTTGTGACATCAAGCGATGACAAGTCGCTTCGTGTGTGGGAGTTCGGCATCCCAGTGGTGATTAAGTATATCAGTGAACCACACATGCATTCAATGCCATCAATATCACTGCACCCGAATTCCAACTGGCTGGCAGCACAGAGCTTGGACAATCAGATATTGATATACAGTACCAAGGAGAGGTTTCAACTTAACAAGAAGAAGCGGTTTGCGGGTCACATTGTGGCAGGTTACGCTTGTCAAGTGAACTTCTCACCAGATGGGAGGTTCGTGATGTCAGGAGATGGTGAAGGTAGTTGCTGGTTCTGGGACTGGAAAAGCTGCAGGAGATTTAAGACGTTGAAGTGCCACAATGGAGTTTGCATTGGATGTGAGTGGCATCCCTTGGAGACTAGCAAGGTTGCAACATGTGGATGGGATGGCGTAATTAAGTACTGGGATTGAAGTTTTGGAAATGTAATGAGAGAGGTTTCTCGAGAATGTCCTGGTTTTGTGGACAAGTTCATGGCAATGCAATTTACAAGGTTTGAACTTCAGGAGATGTTGAAAGCACGCATGTCTATCCAGAAAACTTCAATGTCATCAGGTGAAAACTATACCATGTTTTTAAGCTACCATGTAAGCTCGTTCTGCTATCGAAAGATTGTAATGTACTATGCTATGTATACATACTGGACCAATCAATTTTGAACTGTACGTTACTGCTTACCTGTTTTTGGTTTCAGTTCGTTTATTAATGCCAACATTTGTAGCAGCTCAGAACAAGGCTTGAATACCAGGTTTTATTAGGTAGTTTATCAATCTTTAATCTGT]
[+] EMBL AU070313             [                    AAACCTCCCCNAATTTCCCCAGAAACCCTAACCCTAACCCCACCCGGCGCCATGGATCTCCTCCAGTCGTCCTACACGCCGGNACGACGAGGACGACGACGAGCAGCAGCCCCTCTCCTCGCCGGACGCCTCGCCGCTCCGCCTCCCCGCCAAGTCGGCCGCCCCCGCCGTCGACGACACGGCGCTCGCGCTCTCCGCCGCCGCCGCGTCCACNTCCCGCCCGCNCGACACCNNCCTCCACCTCGTCCCCTTTAACCCCACCGCCGACCAGCTCTGGGCGCCCGTCCTCGGGCCCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSAA31853            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGGCGAGAA TCTGATATGGTTGCCAAGAGTACTTTCCATGGGAAGGAGGAGAGGGATTACCAAGGACGGTCATGGATCACACCGCCCAAGGATGCCAAGGCGAGCAACGAGCGCTGCTATATTCCCAAGAGGTGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OS1495A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGAAGTCTGATATGGTTGCCAAGAGTACTTTCCATGGGAAGGAGGAGAGGGATTACCAAGGACGGTCATGGATCACACCGCCCAAGGATGCCAAGGCGAGCAACGAGCGCTGCTATATTCCCAAGAGGTGTGTGCA CGAGTGGGTTGGGCACACCAAGGGGGTCTCGGCGATTAGGTTTTTCCCCAAGTATGGACACCTTTTGCTGTCTGCGAGTATGGATTGTAAGATTAAGATCTGGGATGTGCTCGNGTCGAGGACATGTATNCGGACGTACATGGGGGCACTCTAAAGGCGGTNAGAGATATATCGTTTTNCNAATNGNTGGna                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL AU197544             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGCTATATTCCCAAGAGGTGTGTGCACCGAGTGGGTTGGGCACACCAAGGGGGTCTCGGCGATTAGGTTTTTCCCCAAGTATGGACACCTTTTGCTGTCTGCGAGTATGGATTGTAAGATTAAGATCTGGGATGTGCTCGAGTCGAGGACATGTATGCGGACGTACAT GGGGCACTCT AAGGCGGTCAGAGATATATCGTTTT CTAAT GATGGGACTAAGTTCTTGAGTGCTGGGTATGACAGGAATATACAGTATTGGGATACTGAGACCGGGCAGGTGATCTCGACCTTCTCTACTGGCAAGGTCCCTTATGTAGTGAAGCTCAACCCGGATGAGGATAAGCAGCATGTTCTCCTCGCTGGGATGAGTGACAAGAAGATTGTGCAGTGGGATATGAAGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AU062661             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCACCCGAATTCCAACTGGCTGGCAGCACAGAGCTTGNACAATCAGATATTGATATACAGTACCAAGNAGAGGTTTCAACTTAACAAGAAGAAGCGGTTTGCGGGTCACATTGTGGCAGGTTACGCTTGTCAAGTGAACTTCTCACCAGATGGGAGGTTCGTGATGTCAGGAGATGGTGAAGGTAGTTGCTGGTTCTGGGACTGGAAAAGCTGCAGGAGATTTAAGACGTTGAAGTGCCACAATGGAGTTTGCATTGGATGTGAGTGGCATCCCTTGGAGACTAGCAAGGTTGCAACATGTGGATGGGATGNCGTAATTAAGTACTGGGATTGAAGTTTTGGAAATGTAATGA                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL OSAA31894            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGAGAGAGGTTTCTCGAGAATGTCCTGGTTTTGTGGACAAGTTCATGGCAATGCAATTTACAAGGTTTGAACTTCAGGAGATGTTGAAAGCACGCATGTCTATCCAGAAAACTTCAATGTCATCAGGTGAAAACTATACCATGTTTTTAAGCTACCATGTAAGCTCGTTCTGCTATCGAAAGATTGTAATGTACTATGCTATGTATACATACTGGACCAATCAATTTTGAACTGTACG                                                                                                                   ]


>consensus_11790#0 ATCAAATCAAAATCGAAACCAAACCTCCCCAAATTTCCCCAGAAACCCTAACCCTAACCC CACCCGGCGCCATGGATCTCCTCCAGTCGTCCTACACGCCGGACGACGAGGACGACGACG AGCAGCAGCCCCTCTCCTCGCCGGACGCCTCGCCGCTCCGCCTCCCCGCCAAGTCGGCCG CCCCCGCCGTCGACGACACGGCGCTCGCGCTCTCCGCCGCCGCCGCGTCCACCTCCCGCC CGCTCGACCCCTCCCTCCACCTCGTCCCCTTTAACCCCACCGCCGACCAGCTCTGGGCGC CCGTCCTCGGGCCCCAGCACCCCCACGCCCCCATCTCCTCCGCCTCCGGCAACCGCAACC ACAAGCTCGGCCACGTCGAGGACGCCGCCGTCCTCCCCTTCCTCTTCGACGAGCAGTACA ACACCTTCCACCGCTTCGGCTACGCCGCCGACCCCTCCGGCCTCCACATCGTCGGCGACG CCCAGCCCTCGGCCGAGCCCGACACCGTCTACAACCTCGCCCCCTCCGAGCACAAGCGCC GCCGCCTGCAGTCCAAGGACGAGGAGGGCGCCAACCAGGAGCCCCTACCGCCGGAGGCCA AGAACCCGGCGTCCGACGAGTGGATCCTCCGCAACAAGCAGAGCCCCTGGGCCGGCAAGA AGGAGGCACCACCCGCGGAGCTCACTGAAGAGCAGCGTCAGTATGCGGAGGCGCACGCTG CCAAGAAGGCCGAGAAGGAGGCGCGCGGCGAAGGGAAGGGCGAGAAGTCTGATATGGTTG CCAAGAGTACTTTCCATGGGAAGGAGGAGAGGGATTACCAAGGACGGTCATGGATCACAC CGCCCAAGGATGCCAAGGCGAGCAACGAGCGCTGCTATATTCCCAAGAGGTGTGTGCACG AGTGGGTTGGGCACACCAAGGGGGTCTCGGCGATTAGGTTTTTCCCCAAGTATGGACACC TTTTGCTGTCTGCGAGTATGGATTGTAAGATTAAGATCTGGGATGTGCTCGAGTCGAGGA CATGTATGCGGACGTACATGGGGCACTCTAAGGCGGTCAGAGATATATCGTTTTCTAATG ATGGGACTAAGTTCTTGAGTGCTGGGTATGACAGGAATATACAGTATTGGGATACTGAGA CCGGGCAGGTGATCTCGACCTTCTCTACTGGCAAGGTCCCTTATGTAGTGAAGCTCAACC CGGATGAGGATAAGCAGCATGTTCTCCTCGCTGGGATGAGTGACAAGAAGATTGTGCAGT GGGATATGAAGTCAGGGCAGATAACCCAAGAGTACGACCAGCACTTGGGAGCAGTCAATA CCATCACTTTTGTAGATAATAATAGGAGGTTTGTGACATCAAGCGATGACAAGTCGCTTC GTGTGTGGGAGTTCGGCATCCCAGTGGTGATTAAGTATATCAGTGAACCACACATGCATT CAATGCCATCAATATCACTGCACCCGAATTCCAACTGGCTGGCAGCACAGAGCTTGGACA ATCAGATATTGATATACAGTACCAAGGAGAGGTTTCAACTTAACAAGAAGAAGCGGTTTG CGGGTCACATTGTGGCAGGTTACGCTTGTCAAGTGAACTTCTCACCAGATGGGAGGTTCG TGATGTCAGGAGATGGTGAAGGTAGTTGCTGGTTCTGGGACTGGAAAAGCTGCAGGAGAT TTAAGACGTTGAAGTGCCACAATGGAGTTTGCATTGGATGTGAGTGGCATCCCTTGGAGA CTAGCAAGGTTGCAACATGTGGATGGGATGGCGTAATTAAGTACTGGGATTGAAGTTTTG GAAATGTAATGAGAGAGGTTTCTCGAGAATGTCCTGGTTTTGTGGACAAGTTCATGGCAA TGCAATTTACAAGGTTTGAACTTCAGGAGATGTTGAAAGCACGCATGTCTATCCAGAAAA CTTCAATGTCATCAGGTGAAAACTATACCATGTTTTTAAGCTACCATGTAAGCTCGTTCT GCTATCGAAAGATTGTAATGTACTATGCTATGTATACATACTGGACCAATCAATTTTGAA CTGTACGTTACTGCTTACCTGTTTTTGGTTTCAGTTCGTTTATTAATGCCAACATTTGTA GCAGCTCAGAACAAGGCTTGAATACCAGGTTTTATTAGGTAGTTTATCAATCTTTAATCT GT



consensusID : consensus_11790#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence
                              [CGAGCTGGCATTCGGACACVTMGAAACCAACCTCCCAAATKCCCAGAAACCTAACCTAACCCACCGGCGCCATGGATCTCTCCAGTCGTMCTACACGCCGGACGACGAGGACGACGACGAGCAGCAGCCCCTCTNCTCGCCGGACGCCTCGCCGCTCCGCCTCCCCGCCAAGTCGGCCGCCCCCGCCGTCGACGACACGGCGCTCGCGCTCTCCGCCGCCGCCGCGTCCACCTCCCGCCCGCTCGACCCCTCCCTCCACCTCGTKCCCCTTTAACCCCACCGCCGACCAGCTCTGGGCGCCCGTNCTCGGGCCCAGCACCCCCACGSCCCCATCTSCTCCGCCTCCGGCAATCGCAACCACAAGCTCGGCCACGTCGAGG]

[+] EMBL BE229567             [CGAGCTGGCATTCGGACACVTMGAAACCAACCTCCCAAATKCCCAGAAACCTAACCTAACCCACCGGCGCCATGGATCTCTCCAGTCGTMCTACACGCCGGACGACGAGGACGACGACGAGCAGCAGCCCCTCTNCTCGCCGGACGCCTCGCCGCTCCGCCTCCCCGCCAAGTCGGCCGCCCCCGCCGTCGACGACACGGCGCTCGCGCTCTCCGCCGCCGCCGCGTCCACCTCCCGCCCGCTCGACCCCTCCCTCCACCTCGTKCCCCTTTAACCCCACCGCCGACCAGCTCTGGGCGCCCGTNCTCGGGCCCAGCACCCCCACGSCCCCATCTSCTCCGCCTCCGGCAATCGCAACCACAAGCTCGGCCACGTCGAGG]


>consensus_11790#1 CGAGCTGGCATTCGGACACVTMGAAACCAACCTCCCAAATKCCCAGAAACCTAACCTAAC CCACCGGCGCCATGGATCTCTCCAGTCGTMCTACACGCCGGACGACGAGGACGACGACGA GCAGCAGCCCCTCTNCTCGCCGGACGCCTCGCCGCTCCGCCTCCCCGCCAAGTCGGCCGC CCCCGCCGTCGACGACACGGCGCTCGCGCTCTCCGCCGCCGCCGCGTCCACCTCCCGCCC GCTCGACCCCTCCCTCCACCTCGTKCCCCTTTAACCCCACCGCCGACCAGCTCTGGGCGC CCGTNCTCGGGCCCAGCACCCCCACGSCCCCATCTSCTCCGCCTCCGGCAATCGCAACCA CAAGCTCGGCCACGTCGAGG



consensusID : consensus_11790#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence
                              [AGAAACCCTAACCCTAACCCCACCCGGCGCCATGGATCTCCTCCAGTCGTCCTACACGCCGGACGACGAGGACGACGACGAGCAGCAGCCCCTNTCCTNGNCGGACGNCTNGCCGNTCCGCCTCCCCGNCAAGTNGGCCGGCCCCGNCGTCGACGACACGGCGCTCGCGATATCCGCCGCCGNCGTGNCCACNTCNCGCCNGCTCGANCCTTCCTTGCAACTGGTNNCATTTAACCCCAACGCCGACCAGATATGNGCGCNNGTCCTCGGGTCCCAGCANCACGACGACGNNATTTACTTCGGCTTCGG]

[+] EMBL AU068705             [AGAAACCCTAACCCTAACCCCACCCGGCGCCATGGATCTCCTCCAGTCGTCCTACACGCCGGACGACGAGGACGACGACGAGCAGCAGCCCCTNTCCTNGNCGGACGNCTNGCCGNTCCGCCTCCCCGNCAAGTNGGCCGGCCCCGNCGTCGACGACACGGCGCTCGCGATATCCGCCGCCGNCGTGNCCACNTCNCGCCNGCTCGANCCTTCCTTGCAACTGGTNNCATTTAACCCCAACGCCGACCAGATATGNGCGCNNGTCCTCGGGTCCCAGCANCACGACGACGNNATTTACTTCGGCTTCGG]


>consensus_11790#2 AGAAACCCTAACCCTAACCCCACCCGGCGCCATGGATCTCCTCCAGTCGTCCTACACGCC GGACGACGAGGACGACGACGAGCAGCAGCCCCTNTCCTNGNCGGACGNCTNGCCGNTCCG CCTCCCCGNCAAGTNGGCCGGCCCCGNCGTCGACGACACGGCGCTCGCGATATCCGCCGC CGNCGTGNCCACNTCNCGCCNGCTCGANCCTTCCTTGCAACTGGTNNCATTTAACCCCAA CGCCGACCAGATATGNGCGCNNGTCCTCGGGTCCCAGCANCACGACGACGNNATTTACTT CGGCTTCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11790#0      ---------ATCAAATCAAAATCGAAACCAAACCTCCCCAAATTTCCCCAGAAACCCTAA 51
consensus_11790#1      CGAGCTGGCATTCGGACACV-TMGAAACCAA--CCTCCCAAATK--CCCAGAAACCTAA- 54
consensus_11790#2      -------------------------------------------------AGAAACCCTAA 11
                                                                        *******  * 

consensus_11790#0      CCCTAACCCCACCCGGCGCCATGGATCTCCTCCAGTCGTCCTACACGCCGGACGACGAGG 111
consensus_11790#1      -CCTAACCC--ACCGGCGCCATGGATCTC-TCCAGTCGTMCTACACGCCGGACGACGAGG 110
consensus_11790#2      CCCTAACCCCACCCGGCGCCATGGATCTCCTCCAGTCGTCCTACACGCCGGACGACGAGG 71
                        ********   ***************** ********* ********************

consensus_11790#0      ACGACGACGAGCAGCAGCCCCTCTCCTCGCCGGACGCCTCGCCGCTCCGCCTCCCCGCCA 171
consensus_11790#1      ACGACGACGAGCAGCAGCCCCTCTNCTCGCCGGACGCCTCGCCGCTCCGCCTCCCCGCCA 170
consensus_11790#2      ACGACGACGAGCAGCAGCCCCTNTCCTNGNCGGACGNCTNGCCGNTCCGCCTCCCCGNCA 131
                       ********************** * ** * ****** ** **** ************ **

consensus_11790#0      AGTCGGCCGCCCCCGCCGTCGACGACACGGCGCTCGCGCTCTCCGCCGCCGCCGCGTCCA 231
consensus_11790#1      AGTCGGCCGCCCCCGCCGTCGACGACACGGCGCTCGCGCTCTCCGCCGCCGCCGCGTCCA 230
consensus_11790#2      AGTNGGCCGGCCCCGNCGTCGACGACACGGCGCTCGCGATATCCGCCGCCGNCGTGNCCA 191
                       *** ***** ***** ********************** * ********** ** * ***

consensus_11790#0      CCTCCCGCCCGCTCGACCCCTCCCTCCACCTCGT-CCCCTTTAACCCCACCGCCGACCAG 290
consensus_11790#1      CCTCCCGCCCGCTCGACCCCTCCCTCCACCTCGTKCCCCTTTAACCCCACCGCCGACCAG 290
consensus_11790#2      CNTCNCGCCNGCTCGANCCTTCCTTGCAACTGGT-NNCATTTAACCCCAACGCCGACCAG 250
                       * ** **** ****** ** *** * ** ** **   * ********** **********

consensus_11790#0      CTCTGGGCGCCCGTCCTCGGGCCCCAGCACCCCCACGCCCCCATCTCCTCCGCCTCCGGC 350
consensus_11790#1      CTCTGGGCGCCCGTNCTCGGGCCC-AGCACCCCCACGSCCCCATCTSCTCCGCCTCCGGC 349
consensus_11790#2      ATATGNGCGCNNGTCCTCGGGTCCCAGCANCACGACGACGNNATTTACTTCGGCTTCGG- 309
                        * ** ****  ** ****** ** **** * * *** *   ** * ** ** ** *** 

consensus_11790#0      AACCGCAACCACAAGCTCGGCCACGTCGAGGACGCCGCCGTCCTCCCCTTCCTCTTCGAC 410
consensus_11790#1      AATCGCAACCACAAGCTCGGCCACGTCGAGG----------------------------- 380
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      GAGCAGTACAACACCTTCCACCGCTTCGGCTACGCCGCCGACCCCTCCGGCCTCCACATC 470
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      GTCGGCGACGCCCAGCCCTCGGCCGAGCCCGACACCGTCTACAACCTCGCCCCCTCCGAG 530
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      CACAAGCGCCGCCGCCTGCAGTCCAAGGACGAGGAGGGCGCCAACCAGGAGCCCCTACCG 590
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      CCGGAGGCCAAGAACCCGGCGTCCGACGAGTGGATCCTCCGCAACAAGCAGAGCCCCTGG 650
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      GCCGGCAAGAAGGAGGCACCACCCGCGGAGCTCACTGAAGAGCAGCGTCAGTATGCGGAG 710
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      GCGCACGCTGCCAAGAAGGCCGAGAAGGAGGCGCGCGGCGAAGGGAAGGGCGAGAAGTCT 770
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      GATATGGTTGCCAAGAGTACTTTCCATGGGAAGGAGGAGAGGGATTACCAAGGACGGTCA 830
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      TGGATCACACCGCCCAAGGATGCCAAGGCGAGCAACGAGCGCTGCTATATTCCCAAGAGG 890
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      TGTGTGCACGAGTGGGTTGGGCACACCAAGGGGGTCTCGGCGATTAGGTTTTTCCCCAAG 950
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      TATGGACACCTTTTGCTGTCTGCGAGTATGGATTGTAAGATTAAGATCTGGGATGTGCTC 1010
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      GAGTCGAGGACATGTATGCGGACGTACATGGGGCACTCTAAGGCGGTCAGAGATATATCG 1070
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      TTTTCTAATGATGGGACTAAGTTCTTGAGTGCTGGGTATGACAGGAATATACAGTATTGG 1130
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      GATACTGAGACCGGGCAGGTGATCTCGACCTTCTCTACTGGCAAGGTCCCTTATGTAGTG 1190
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      AAGCTCAACCCGGATGAGGATAAGCAGCATGTTCTCCTCGCTGGGATGAGTGACAAGAAG 1250
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      ATTGTGCAGTGGGATATGAAGTCAGGGCAGATAACCCAAGAGTACGACCAGCACTTGGGA 1310
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      GCAGTCAATACCATCACTTTTGTAGATAATAATAGGAGGTTTGTGACATCAAGCGATGAC 1370
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      AAGTCGCTTCGTGTGTGGGAGTTCGGCATCCCAGTGGTGATTAAGTATATCAGTGAACCA 1430
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      CACATGCATTCAATGCCATCAATATCACTGCACCCGAATTCCAACTGGCTGGCAGCACAG 1490
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      AGCTTGGACAATCAGATATTGATATACAGTACCAAGGAGAGGTTTCAACTTAACAAGAAG 1550
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      AAGCGGTTTGCGGGTCACATTGTGGCAGGTTACGCTTGTCAAGTGAACTTCTCACCAGAT 1610
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      GGGAGGTTCGTGATGTCAGGAGATGGTGAAGGTAGTTGCTGGTTCTGGGACTGGAAAAGC 1670
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      TGCAGGAGATTTAAGACGTTGAAGTGCCACAATGGAGTTTGCATTGGATGTGAGTGGCAT 1730
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      CCCTTGGAGACTAGCAAGGTTGCAACATGTGGATGGGATGGCGTAATTAAGTACTGGGAT 1790
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      TGAAGTTTTGGAAATGTAATGAGAGAGGTTTCTCGAGAATGTCCTGGTTTTGTGGACAAG 1850
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      TTCATGGCAATGCAATTTACAAGGTTTGAACTTCAGGAGATGTTGAAAGCACGCATGTCT 1910
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      ATCCAGAAAACTTCAATGTCATCAGGTGAAAACTATACCATGTTTTTAAGCTACCATGTA 1970
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      AGCTCGTTCTGCTATCGAAAGATTGTAATGTACTATGCTATGTATACATACTGGACCAAT 2030
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      CAATTTTGAACTGTACGTTACTGCTTACCTGTTTTTGGTTTCAGTTCGTTTATTAATGCC 2090
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      AACATTTGTAGCAGCTCAGAACAAGGCTTGAATACCAGGTTTTATTAGGTAGTTTATCAA 2150
consensus_11790#1      ------------------------------------------------------------
consensus_11790#2      ------------------------------------------------------------
                                                                                   

consensus_11790#0      TCTTTAATCTGT 2162
consensus_11790#1      ------------
consensus_11790#2      ------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)