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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2078 fasta sequence
[GAATATTCCGGTGACAGCATTGGGCCGTCTCGCTCCCGCCACACGCGCGAATGCCGCTCCTCCACCTCTCGCCGCCGCCGCACCGCCTCCTCCTCGCCGGCGGCGGCCGCCGCCGCCTACTCCTCCCGGCGGCTCGCCGCCGCTCCCTCGTCCGCGTCAGGGCGGCGGCGTCGGCGGCCGCGGCCGCGGCGGAGGCGTACGGGCTACCCTTCCCTCCTGAGCGCGCCGCCCACCACCGGGAGCTCGCGGCGGCCGCCGCGGCCGTCGAGCGCGCCTGCCGCCTCTGCGTAGACGTGAAGAGAACGCTGCTTTCGGGTGACAAGAAGATTCTTGAAAAGAATGACCAAACTCCTGTCACAGTTGCAGATTTTGGAGTACAAGCTCTTATTAGTTTAGAGCTCCAGCGATTGTTTCCGTCAATACCTCTGGTGGCAGAAGAGGATTCAGCTTCTCTGAGGTCATCCAATACTGATGATAACAGTAGTAATGTTCTTGTTGAGTCAATTTCAAGTGCTGTTGCAGAAAAAGTGAGTAACGCCAATTCACTTTTAACTCATGATGATGTGCTGAGAGCTATTGATAGAGGAGGCAAGAATGCTGTATCCTTTGATTCAAATCCTGCTAGTTATTGGGTACTTGATCCAATTGATGGCACAAAAGGTTTCTTGGGAGGGGACGATGCTCTGTATGTGGTGGGGCTGGCTCTTGTGGTAAATGAAAAGGTAGTAGCAGGAGTGATGGGATGTCCTAATTGGTCTAATGCTACCATAGCCAGCAGAAAAGAAGACAGCGCTGCTGCCCAACCTGATCATGGGATCCTTATGATTGCTCATGTGGGCTGTGGAACTTGGTCTAGGCATTTGTCTGTCGATATTGGCCAGTTCACTACGGCACAGAGTACTTGGAATAGATGCTTAGTGGATTCTTGTTCAGTTGTGAACATGGCACGCTTTTGCATTCCTGATAGCCAAACCTGGAATATGATACCGCTATCTGTTCTCTTCAACTCAACAATGGATGAATCCAATCCTAGAGATGAGAATGAAATTCTCCTCTTATCTGTTTACTGTGGCAGCTTGTGCAAGTACCTAACTGTAGCTTCTGGGAGAGCCTCCGTTTTTGTACTTCGAGCACGGACGAAAAATCTCAAGTCTTGGGATCATGCTGTCGGAGTAATTTGTGTACAGGAAGCTGGAGGTCAGATTAGTGACTGGAGTGGGAAACCGTTGGATCTTGCAGCTGACCTAACTGGGCGCAGAGACATTTACCCTTCAGGTGGTGTTCTCGTCACCAACGGTGCTCTGCACGGCAAGCTGGTTGAAATGATCTCAGCAAATCACAAGTAGCGGCAAATTTTGCATAACTGCGCACATAACACAGATTTTTCTTTTGTTAACATTTTACCTCATCAACCATCAAAATGTATTTGGTCTCTCGTTCGGGAGAGAAACCTTGCAAACATGTTCAGATTACTTCCAGTATCATTACAACATACAACACAACAGATATACATGACAGAAGGCATTGTTCCCCAATGAACAATAGTACCTGATTACCTGAAGATACATGCAAATATGTTGCTGGTCTAAGTCATCCAACACCAAATTGCTTGCAGAATTATACAATCTTTTGCCTTCACAATGTGTGAATCTGTTGCATAATCCTGAAAGTTTGCATGGTTGCATAGCATCCACACACACCTGAAGCTTGTGAGGAGGAGAAAACTTGGACCAATCTGACAGCAGTGCACCATGCAGTGAATCAGGATGCTTTCGGTTTGGCCACCAATTCAAGCCGAAGAAAAGGACACCCAAAAGGTCTGCATCTTTGCCTCTTTGGCTCCATTTCAAGATAACGACCTTCATGTCCTAATGCAAGAATTGGCAGCTTCTAATCATGATTAGCCCAACAAATTCCATGATCAGCACGCACTTTACTGCTTGCTTACATCCTGAAGATCTTGCTCTCCATTGACACGTCCTCCAGCTACGAATTTCAGTAGATGGCCTGTAGTTGGATTCTTGTTGTAATCTATATTGACTTTTTTTTTCTTAAGCATTAATAAGAGCTACTGATCT]
[+] EMBL AK065243 [GAATATTCCGGTGACAGCATTGGGCCGTCTCGCTCCCGCCACACGCGCGAATGCCGCTCCTCCACCTCTCGCCGCCGCCGCACCGCCTCCTCCTCGCCGGCGGCGGCCGCCGCCGCCTACTCCTCCCGGCGGCTCGCCGCCGCTCCCTCGTCCGCGTCAGGGCGGCGGCGTCGGCGGCCGCGGCCGCGGCGGAGGCGTACGGGCTACCCTTCCCTCCTGAGCGCGCCGCCCACCACCGGGAGCTCGCGGCGGCCGCCGCGGCCGTCGAGCGCGCCTGCCGCCTCTGCGTAGACGTGAAGAGAACGCTGCTTTCGGGTGACAAGAAGATTCTTGAAAAGAATGACCAAACTCCTGTCACAGTTGCAGATTTTGGAGTACAAGCTCTTATTAGTTTAGAGCTCCAGCGATTGTTTCCGTCAATACCTCTGGTGGCAGAAGAGGATTCAGCTTCTCTGAGGTCATCCAATACTGATGATAACAGTAGTAATGTTCTTGTTGAGTCAATTTCAAGTGCTGTTGCAGAAAAAGTGAGTAACGCCAATTCACTTTTAACTCATGATGATGTGCTGAGAGCTATTGATAGAGGAGGCAAGAATGCTGTATCCTTTGATTCAAATCCTGCTAGTTATTGGGTACTTGATCCAATTGATGGCACAAAAGGTTTCTTGGGAGGGGACGATGCTCTGTATGTGGTGGGGCTGGCTCTTGTGGTAAATGAAAAGGTAGTAGCAGGAGTGATGGGATGTCCTAATTGGTCTAATGCTACCATAGCCAGCAGAAAAGAAGTCAGCGCTGCTGCCCAACCTGATCATGGGATCCTTATGATTGCTCATGTGGGCTGTGGAACTTGGTCTAGGCATTTGTCTGTCGATATTGGCCAGTTCACTACGGCACAGAGTACTTGGAATAGATGCTTAGTGGATTCTTGTTCAGTTGTGAACATGGCACGCTTTTGCATTCCTGATAGCCAAACCTGGAATATGATACCGCTATCTGTTCTCTTCAACTCAACAATGGATGAATCCAATCCTAGAGATGAGAATGAAATTCTCCTCTTATCTGTTTACTGTGGCAGCTTGTGCAAGTACCTAACTGTAGCTTCTGGGAGAGCCTCCGTTTTTGTACTTCGGGCACGGACGAAAAATCTCAAGTCTTGGGATCATGCTGTCGGAGTAATTTGTGTACAGGAAGCTGGAGGTCAGATTAGTGACTGGAGTGGGAAACCGTTGGATCTTGCAGCTGACCTAACTGGGCGCAGAGACATTTACCCTTCAGGTGGTGTTCTCGTCACCAACGGTGCTCTGCACGGCAAGCTGGTTGAAATGATCTCAGCAAATCACAAGTAGCGGCAAATTTTGCATAACTGCGCACATAACACAGATTTTTCTTTTGTTAACATTTTACCTCATCAACCATCAAAATGTATTTGGTCTCTCGTTCGGGAGA ]
[+] EMBL AK064484 [ TAGAGCTCCAGCGATTGTTTCCGTCAATACCTCTGGTGGCAGAAGAGGATTCAGCTTTTCTGAGGTCATCCAATACTGATGATAACAGTAGTAATGTTCTTGTTGAGTCAATTTCAAGTGCTGTTGCAGAAAAAGTGAGTAACGCCAATTCACTTTTAACTCATGATGATGTGCTGAGAGCTATTGATAGAGGAGGCAAGAATGCTGTATCCTTTGATTCAAATCCTGCTAGTTATTGGGTACTTGATCCAATTGATGGCACAAAAGGTTTCTTGGGAGGGGACGATGCTCTGTATGTGGTGGGGCTGGCTCTTGTGGTAAATGAAAAGGTAGTAGCAGGAGTGATGGGATGTCCTAATTGGTCTAATGCTACCATAGCCAGCAGAAAAGAAGACAGCGCTGCTGCCCAACCTGATCATGGGATCCTTATGATTGCTCATGTGGGCTGTGGAACTTGGTCTAGGCATTTGTCTGTCGATATTGGCCAGTTCACTACGGCACAGAGCACTTGGAATAGATGCCTAGTGGATTCTTGTTCAGTTGTGAACATGGCACGCTTTTGCATTCCTGATAGCCAAACCTGGAATATGATACCGCTATCTGTTCTCTTCAACTCAACAATGGATGAATCCAATCCTAGAGATGAGAATGAAATTCTCCTCTTATCTGTTTACTGTGGCAGCTTGTGCAAGTACCTAACTGTAGCTTCTGGGAGAGCCTCCGTTTTTGTACTTCGAGCACGGACGAAAAATCTCAAGTCTTGGGATCATGCTGTCGGAGTAATTTGTGTACAGGAAGCTGGAGGTCAGATTAGTGACTGGAGTGGGAAACCGTTGGATCTTGCAGCTGACCTAACTGGGCGCAGAGACATTTACCCTTCAGGTGGTGTTCTCGTCACCAACGGTGCTCTGCACGGCAAGCTGGTTGAAATGATCTCAGCAAATCACAAGTAGCGGCAAATTTTGCATAACTGCGCACATAACACAGATTTTTCTTTTGTTAACATTTTACCTCATCAACCATCAAAATGTATTTGGTCTCTCGTTCGGGAGAGAAACCTTGCAAACATGTTCAGATTACTTCCAGTATCATTACAACATACAACACAACAGATATACATGACAGAAGGCATTGTTCCCCAATGAACAATAGTACCTGATTACCTGAAGATACATGCAAATATGTTGCTGGTCTAAGTCATCCAACACCAAATTGCTTGCAGAATTATACAATCTTTTGCCTTCACAATGTGTGAATCTGTTGCATAATCCTGAAAGTTTGCATGGTTGCATAGCATCCACACACACCTGAAGCTTGTGAGGAGGAGAAAACTTGGACCAATCTGACAGCAGTGCACCATGCAGTGAATCAGGATGCTTTCGGTTTGGCCACCAATTCAAGCCGAAGAAAAGGACACCCAAAAGGTCTGCATCTTTGCCTCTTTGGCTCCATTTCAAGATAACGACCTTCATGTCCTAATGCAAGAATTGGCAGCTTCTAATCATGATTAGCCCAACAAATTCCATGATCAGCACGCACTTTACTGCTTGCTTACATCCTGAAGATCTTGCTCTCCATTGACACGTCCTCCAGCTACGAATTTCAGTAGATGGCCTGTAGTTGGATTCTTGTTGTAATCTATATTGACTTTTTTTTTCTTAAGCATTAATAAGAGCTACTGATCT]
[-] EMBL CB641646 [ GAGTGATGGGATGTCCTAATTGGTCTAATGCTACCATAGCCAGCAGAAAAGAAGACAGCGCTGCTGCCCAACCTGATCATGGGATCCTTATGATTGCTCATGTGGGCTGTGGAACTTGGTCTAGGCATTTGTCTGTCGATATTGGCCAGTTCACTACGGCACAGAGTACTTGGAATAGATGCTTAGTGGATTCTTGTTCAGTTGTGAACATGGCACGCTTTTGCATTCCTGATAGCCAAACCTGGAATATGATACCGCTATCTGTTCTCTTCAACTCAACAATGGATGAATCCAATCCTAGAGATGAGAATGAAATTCTCCTCTTATCTGTTTACTGTGGCAGCTTGTGCAAGTACCTAACTGTAGCTTCTGGGAGAGCCTCCGTTTTTGTACTTCGAGCACGGACGAAAAATCTCAAGTCTTGGGATCATGCTGTCGGAGTAATTTGTGTACAGGAAGCTGGAGGTCAGATTAGTGACTGGAGTGGGAAACCGTTGGATCTTGCAGCTGACCTAACTGGGCGCAGAGACATTTACCCTTCAGGTGGTGTTCTCGTCACCAACGGTGCTCTGCACGGCAAGCTGGTTGAAATGATCTCAGCAAATCACAAGTAGCGGCAAATTTTGCATAACTGCGCACATAACACAGATTTTTCTTTTGTTAACATTTTACCTCATCAACCATCAAAATGTATTTGGTCTCTCGTTCGGGAGAGAAACCTTGCAAACATGTTCAGATTACTTCCAGTATCATTACAACATACAACACAACAGAT ]
consensusID : consensus_11792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1529 fasta sequence
[ATTCGATCGAGGCTTTCGCTCCCGCCACACACGCGAAAATGCCGCTCCTCCACATCTCCCTCCCGCCGCACCGCCTCCTCCTCGTCGCCGGCGGCCGCCGCCGCCGCCGCCGGCTGCTACTCCTCCCGCCGTCTCCCCGCCGCGTCTGCGTAAGGGCGGCGGCGTCGGTGGAGTTGGAGGTGGCCGCGGCCGCGGGGGAGTACGGGCTCCCCTTCCCGTCGGAGCGCGCCGCCCACCACCGCGAGCTCGCCGCGGCCGCCGCCGCCGTCGAGCGCGCCTGCCGCCTCTGCGTAGACGTCAAGAGATCACTG-CTTTCAGGTGAGAAGAAAATTTTCGAAAAGAATGACCAAACTCTTGTCACAGTTGCGGATTTTGGAGTGCAAGCCCTTATTAGTTTAGAGCTCCAGCGATCGTTTCCATCAATTCCTCTTGTGGCAGAAGAGGATTCAGCTTCTTTAAGGTCATCTAATGCTGATAACAGTAGCAATGTGCTTGTTGAGTCAATTTCAAGTGCTGTTGCCGACAATGTGAGTAACACCGATTCACTTTTAACTCATGATGATGTGCTGAGAGCTATTGACAAAGGAGGCAAGGATAGTGCATCCTTTGATTCAAATCCCGCTACTTATTGGGTACTTGATCCAATTGATGGTACACAAGGTTTCTCGAAAGTGGATGATACTCTGTATGTGGTGGGCTTGGCTCTTGTGGTGAATGGAAAAGTAGTAGCAGGAGTCATGGGAAGTCCTAATTGGGCCAGTGATACCATAGCCAACAGAAAAGATGACAGCATTGCTTCCCGTTATGATCGTGGGATCCTTATGATTGCTCATGAGGGTTGTGGTGCTTGGACTAAGCGCCTGTATGATGAGTTTGGCCAGTTCACTACGTCAAAGGATACTTGGAACAGATGCTTCGTGGATTCTTGTTCTGTTGTACACAAGGCACGCTATTGCCTTTCCGATAACCAAACCTGGAATATGATACCACTATCTGTTGTGTTCAACTCAACGACGGATGAATCGAAACCTAGAGATGAGAATGAACTTCTTACTTCATATGTTTTCTCTGGCAGTTTGTGCAAGTACCTTACTGTAGCCTATGGGAGAGCCTCAGTTTTCGTCCTTAAAGCACGGACGAAAAGCCTCAAGTCTTGGGATCATACTGTAGGAGTAATTTGTGTGCAGGAAGCTGGAGGCCAAGTTACTGACTGGAGAGGGGAACCTTTGGATCTTGAAGCTGACCTAACTGGGCGCAGAGACATTTACCCTCATGGTGGCATTCTCATCACCAACGGCGTCCTGCACAACAAGCTTGCTGAATTGATCAAGGCGAATTACTAAGTAGCTGCAATGTTGCATATATAGCTCCACACATGACACATTTTTTTTGGGGTAGCATTTTACCTCACCGACCATCAAGCTGTATTTGGTCTCTCATCCAGGAGAGAAACCTTGCAAACATGTCCATATCACTTATCACCTCTAATATCATTACAGCAACAGATATGCATGACAGAAAAAAAAAGG]
[+] EMBL AK120618 [ATTCGATCGAGGCTTTCGCTCCCGCCACACACGCGAAAATGCCGCTCCTCCACATCTCCCTCCCGCCGCACCGCCTCCTCCTCGTCGCCGGCGGCCGCCGCCGCCGCCGCCGGCTGCTACTCCTCCCGCCGTCTCCCCGCCGCGTCTGCGTAAGGGCGGCGGCGTCGGTGGAGTTGGAGGTGGCCGCGGCCGCGGGGGAGTACGGGCTCCCCTTCCCGTCGGAGCGCGCCGCCCACCACCGCGAGCTCGCCGCGGCCGCCGCCGCCGTCGAGCGCGCCTGCCGCCTCTGCGTAGACGTCAAGAGATCACTG CTTTCAGGTGAGAAGAAAATTTTCGAAAAGAATGACCAAACTCTTGTCACAGTTGCGGATTTTGGAGTGCAAGCCCTTATTAGTTTAGAGCTCCAGCGATCGTTTCCATCAATTCCTCTTGTGGCAGAAGAGGATTCAGCTTCTTTAAGGTCATCTAATGCTGATAACAGTAGCAATGTGCTTGTTGAGTCAATTTCAAGTGCTGTTGCCGACAATGTGAGTAACACCGATTCACTTTTAACTCATGATGATGTGCTGAGAGCTATTGACAAAGGAGGCAAGGATAGTGCATCCTTTGATTCAAATCCCGCTACTTATTGGGTACTTGATCCAATTGATGGTACACAAGGTTTCTCGAAAGTGGATGATACTCTGTATGTGGTGGGCTTGGCTCTTGTGGTGAATGGAAAAGTAGTAGCAGGAGTCATGGGAAGTCCTAATTGGGCCAGTGATACCATAGCCAACAGAAAAGATGACAGCATTGCTTCCCGTTATGATCGTGGGATCCTTATGATTGCTCATGAGGGTTGTGGTGCTTGGACTAAGCGCCTGTATGATGAGTTTGGCCAGTTCACTACGTCAAAGGATACTTGGAACAGATGCTTCGTGGATTCTTGTTCTGTTGTACACAAGGCACGCTATTGCCTTTCCGATAACCAAACCTGGAATATGATACCACTATCTGTTGTGTTCAACTCAACGACGGATGAATCGAAACCTAGAGATGAGAATGAACTTCTTACTTCATATGTTTTCTCTGGCAGTTTGTGCAAGTACCTTACTGTAGCCTATGGGAGAGCCTCAGTTTTCGTCCTTAAAGCACGGACGAAAAGCCTCAAGTCTTGGGATCATACTGTAGGAGTAATTTGTGTGCAGGAAGCTGGAGGCCAAGTTACTGACTGGAGAGGGGAACCTTTGGATCTTGAAGCTGACCTAACTGGGCGCAGAGACATTTACCCTCATGGTGGCATTCTCATCACCAACGGCGTCCTGCACAACAAGCTTGCTGAATTGATCAAGGCGAATTACTAAGTAGCTGCAATGTTGCATATATAGCTCCACACATGACACATTTTTTTTGGGGTAGCATTTTACCTCACCGACCATCAAGCTGTATTTGGTCTCTCATCCAGGAGAGAAACCTTGCAAACATGTCCATATCACTTATCACCTCTAATATCATTACAGCAACAGAT ]
[+] EMBL CB678538 [ CCTCCCCCTGCACCGCCTCCTCCTCGTCGCCGGCGGCCGCCGCCGCCGCCGCCGGCTGCTACTCCTCCCGCCGTCTCCCCGCCGCGTCTGCGTAAGGGCGGCGGCGTCAGTGGAGTTGGAGGTGGCCGCGGCCGCGGGGGAGTACGGGCTCCCCTTCCCGTCGGAGCGCGCCGCCCACCACCGCGAGCTCGCCGCGGCCGCCGCCGCCGACGAGCGCGCCTGCCGCCTCTGCGTAGACGTCAAGAGATCACTGTCTTTCAGGTGAGAAGAAAATTTTCGAAAAGAATGACCAAACTCTTGTCACAGTTGCGGATTTTGGAGTGCAAGCCCTTATTAGATTACAGCTCCAGCGATCGTTTCCATCAATTCCTCTTGTGGCACAAGAGGATTCAACTTCTTTAAGGTCATCTAATGCTGATAACAGTACCAATGTGCTTGTTGAGACAATTTCAAGTGCTGTTGCCGACAATGTGAGTAACACCGATTCACTTTTAACTCATGATGATGTGCTGAGAGCTATTGACAAAGGAGGCAAGGATAGTGCATCCTTTGATTCAAATCCCGCTACTTATTGGGTACTTGATCCAATTGATGGAACACAAGGTTTCTCGAAAGTGGA ]
[+] EMBL CB682915 [ TTGATTCAAATCCCGCTACTTATTGGGTACTTGATCCAATTGATGGTACACAAGGTTTCTCGAAAGTGGATGATACTCTGTATGTGGTGGGCTTGGCTCTTGTGGTGAATGGAAAAGTAGTAGCAGGAGTCATGGGAAGTCCTAATTGGGCCAGTGATACCATAGCCAACAGAAAAGATGACAGCATTGCTTCCCGTTATGATCGTGGGATCCTTATGATTGCTCATGAGGGTTGTGGTGCTTGGACTAAGCGCCTGTATGATGAGTTTGGCCAGTTCACTACGTCAAAGGATACTTGGAACAGATGCTTCGTGGATTCTTGTTCTGTTGTACACAAGGCACGCTATTGCCTTTCCGATAACCAAACCTGGAATATGATACCACTATCTGTTGTGTTCAACTCAACGACGGATGAATCGAAACCTAGAGATGAGAATGAACTTCTTACTTCATATGTTTTCTCTGGCAGTTTGTGCAAGTACCTTACTGTAGCCTATGGGAGAGCCTCAGTTTTCGTCCTTAAAGCACGGACGAAAAGCCTCAAGTCTTGGGATCATACTGTAGGAGTAATTTGTGTGCAGGAAGCTGGAGGCCAAGTTACTGACTGGAGAGGGGAACCTTTGGATCTTGAAGCTGACCTAACTGGGCGCAGAGACATTTACCCTCATGGTGGCATTCTCATCACCAACGGCGTCCTGCACAACAAGCTTGCTGAATTGATCAAGGCGAATTACTAAGTAGCTGCAATGTTGCATATATAGCTCCACACATGACACATTTTTTTTGGGGTAGCATTT ]
[-] EMBL CB682916 [ TAGTAGCAGGAGTCATGGGAAGTCCTAATTGGGCCAGTGATACCATAGCCAACAGAAAAGATGACAGCATTGCTTCCCGTTATGATCGTGGGATCCTTATGATTGCTCATGAGGGTTGTGGTGCTTGGACTAAGCGCCTGTATGATGAGTTTGGCCAGTTCACTACGTCAAAGGATACTTGGAACAGATGCTTCGTGGATTCTTGTTCTGTTGTACACAAGGCACGCTATTGCCTTTCCGATAACCAAACCTGGAATATGATACCACTATCTGTTGTGTTCAACTCAACGACGGATGAATCGAAACCTAGAGATGAGAATGAACTTCTTACTTCATATGTTTTCTCTGGCAGTTTGTGCAAGTACCTTACTGTAGCCTATGGGAGAGCCTCAGTTTTCGTCCTTAAAGCACGGACGAAAAGCCTCAAGTCTTGGGATCATACTGTAGGAGTAATTTGTGTGCAGGAAGCTGGAGGCCAAGTTACTGACTGGAGAGGGGAACCTTTGGATCTTGAAGCTGACCTAACTGGGCGCAGAGACATTTACCCTCATGGTGGCATTCTCATCACCAACGGCGTCCTGCACAACAAGCTTGCTGAATTGATCAAGGCGAATTACTAAGTAGCTGCAATGTTGCATATATAGCTCCACACATGACACATTTTTTTTGGGGTAGCATTTTACCTCACCGACCATCAAGCTGTATTTGGTCTCTCATCCAGGAGAGAAACCTTGCAAACATGTCCATATCACTTATCACCTCTAATATCATTACAGCAACAGATATGCATGACAGAAAAAAAAAGG]
consensusID : consensus_11792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence
[TAGTAGCAGGAGTCATGGGAAGTCCTAATGGGGCCAGTGATACCATAGCCAACAGAAAAGATGACAGCATTGCTTCCCGTTATGATCGTGGGATCCTTATGATTGCTCATGAGGGTTGTGGTGCTTGGACTAAGCGCCTGTATGATGAGTTTGGCCAGTTCACTACGTCAAAGGATACTTGGAACAGATGCTTCGTGGATTCTTGTTCTGTTGTACACAAGGCACGCTATTGCCTTTCCGATAACCAAACCTGGAATATGATACCACTATCTGTTGTGTTCAACTCAACGACGGATGAATCGAAACCTAGAGATGAGAATGAACTTCTTACTTCATATGTTTTCTCTGGCAGTTTGTGCAAGTACCTTACTGTAGCCTATGGGAGAGCCTCAGTTTTCGTCCTTAAAGCACGGACGAAAAGCCTCAAGTCTTGGGATCATACTGTAGGAGTAATTTGTGTGCAGGAAGCTGGAGGCCAAGTTACTGACTGGAGAGGGGAACCTTTGGATCTTGAAGCTGACCTAACTGGGCGCAGAGACATTTACCCTCATGGTGGCATTCTCATCACCAACGGCGTCCTGCACAACAAGCTTGCTGAATTGATCAAGGCGAATTACTAAGTAGCTGCAATGTTGCATATATAGCTCCACACATGACACATTTTTTTTGGGGTAGCATTTTACCTCACCGACCATCAAGCTGTATTTGGTCTCTCATCCAGGAGAGAAACCTTGCAAACATGTCCATATCACTTATCACCTCTAATATCATTACAGCAACAGATATGCATGACAGAATACACTGTTCCCC]
[-] EMBL CB678539 [TAGTAGCAGGAGTCATGGGAAGTCCTAATGGGGCCAGTGATACCATAGCCAACAGAAAAGATGACAGCATTGCTTCCCGTTATGATCGTGGGATCCTTATGATTGCTCATGAGGGTTGTGGTGCTTGGACTAAGCGCCTGTATGATGAGTTTGGCCAGTTCACTACGTCAAAGGATACTTGGAACAGATGCTTCGTGGATTCTTGTTCTGTTGTACACAAGGCACGCTATTGCCTTTCCGATAACCAAACCTGGAATATGATACCACTATCTGTTGTGTTCAACTCAACGACGGATGAATCGAAACCTAGAGATGAGAATGAACTTCTTACTTCATATGTTTTCTCTGGCAGTTTGTGCAAGTACCTTACTGTAGCCTATGGGAGAGCCTCAGTTTTCGTCCTTAAAGCACGGACGAAAAGCCTCAAGTCTTGGGATCATACTGTAGGAGTAATTTGTGTGCAGGAAGCTGGAGGCCAAGTTACTGACTGGAGAGGGGAACCTTTGGATCTTGAAGCTGACCTAACTGGGCGCAGAGACATTTACCCTCATGGTGGCATTCTCATCACCAACGGCGTCCTGCACAACAAGCTTGCTGAATTGATCAAGGCGAATTACTAAGTAGCTGCAATGTTGCATATATAGCTCCACACATGACACATTTTTTTTGGGGTAGCATTTTACCTCACCGACCATCAAGCTGTATTTGGTCTCTCATCCAGGAGAGAAACCTTGCAAACATGTCCATATCACTTATCACCTCTAATATCATTACAGCAACAGATATGCATGACAGAATACACTGTTCCCC]
[+] EMBL CF589233 [ ACAGCATTGCTTCCCGTTATGATCGTGGGATCCTTATGATTGCTCATGAGGGTTGTGGTGCTTGGACTAAGCGCCTGTATGATGAGTTTGGCCAGTTCACTACGTCAAAGGATACTTGGAACAGATGCTTCGTGGATTCTTGTTCTGTTGTACACAAGGCACGCTATTGCCTTTCCGATAACCAAACCTGGAATATGATACCACTATCTGTTGTGTTCAACTCAACGACGGATGAATCGAAACCTAGAGATGAGAATGAACTTCTTACTTCATATGTTTTCTCTGGCAGTTTGTGCAAGTACCTTACTGTAGCCTATGGGAGAGCCTCAGTTTTCGTCCTTAAAGCACGGACGAAAAGCCTCAAGTCTTGGGATCATACTGTAGGAGTAATTTGTGTGCAGGAAGCTGGAGGCCAAGTTACTGACTGGAGAGGGGAACCTTTGGATCTTGAAGCTGACCTAACTGGGCGCAGAGACATTTACCCTCATGGTGGCATTCTCATCACCAACGGCGTCCTGCACAACAAGCTTGCTGAATTGATCAAGGCGAATTACTAAGTAGCTGCAATGTTGCATATATAGCTCCACACATGACACATTTTTTTTGGGGTAGCATTTTACCTCACCGACCATCAAGCTGTATTTGGTCTCTCATCCAGGAGAGAAACCTTGCAAACATGTCCATATCACTTATCACCTCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11792#1 ------------ATTCGATCGAGGCTTTCGCTCCCGCCACACACGCGAAAATGCCGCTCC 48
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 GAATATTCCGGTGACAGCATTGGGCCGTCTCGCTCCCGCCACACGCGCGAATGCCGCTCC 60
consensus_11792#1 TCCACATCTCCCTCCCGCCGCACCGCCTCCTCCTCGTCGCCGGCGGCCGCCGCCGCCGCC 108
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 TCCACCTCTCGCCGCCGCCGCACCGCCTCCTCCTCGCCGGCGGCGGCCGCCGCCGCC--- 117
consensus_11792#1 GCCGGCTGCTACTCCTCCCGCCGTCTCCCCGCCGCGTCTGCGTAAGGGCGGCGGCGTCGG 168
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 ---------TACTCCTCCCGGCGGCTCGCCGCCGCTCCCTCGTCCGCGTCAGGGCG---G 165
consensus_11792#1 TGGAGTTGGAGGTGGCCGCGGCCGCGGGGGAGTACGGGCTCCCCTTCCCGTCGGAGCGCG 228
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 CGGCGTCGGCGGCCGCGGCCGCGGCGGAGGCGTACGGGCTACCCTTCCCTCCTGAGCGCG 225
consensus_11792#1 CCGCCCACCACCGCGAGCTCGCCGCGGCCGCCGCCGCCGTCGAGCGCGCCTGCCGCCTCT 288
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 CCGCCCACCACCGGGAGCTCGCGGCGGCCGCCGCGGCCGTCGAGCGCGCCTGCCGCCTCT 285
consensus_11792#1 GCGTAGACGTCAAGAGATCACTGCTTTCAGGTGAGAAGAAAATTTTCGAAAAGAATGACC 348
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 GCGTAGACGTGAAGAGAACGCTGCTTTCGGGTGACAAGAAGATTCTTGAAAAGAATGACC 345
consensus_11792#1 AAACTCTTGTCACAGTTGCGGATTTTGGAGTGCAAGCCCTTATTAGTTTAGAGCTCCAGC 408
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 AAACTCCTGTCACAGTTGCAGATTTTGGAGTACAAGCTCTTATTAGTTTAGAGCTCCAGC 405
consensus_11792#1 GATCGTTTCCATCAATTCCTCTTGTGGCAGAAGAGGATTCAGCTTCTTTAAGGTCATCTA 468
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 GATTGTTTCCGTCAATACCTCTGGTGGCAGAAGAGGATTCAGCTTCTCTGAGGTCATCCA 465
consensus_11792#1 ATGCTGAT---AACAGTAGCAATGTGCTTGTTGAGTCAATTTCAAGTGCTGTTGCCGACA 525
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 ATACTGATGATAACAGTAGTAATGTTCTTGTTGAGTCAATTTCAAGTGCTGTTGCAGAAA 525
consensus_11792#1 ATGTGAGTAACACCGATTCACTTTTAACTCATGATGATGTGCTGAGAGCTATTGACAAAG 585
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 AAGTGAGTAACGCCAATTCACTTTTAACTCATGATGATGTGCTGAGAGCTATTGATAGAG 585
consensus_11792#1 GAGGCAAGGATAGTGCATCCTTTGATTCAAATCCCGCTACTTATTGGGTACTTGATCCAA 645
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 GAGGCAAGAATGCTGTATCCTTTGATTCAAATCCTGCTAGTTATTGGGTACTTGATCCAA 645
consensus_11792#1 TTGATGGTACACAAGGTTTCTCGAAAGTGGATGATACTCTGTATGTGGTGGGCTTGGCTC 705
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 TTGATGGCACAAAAGGTTTCTTGGGAGGGGACGATGCTCTGTATGTGGTGGGGCTGGCTC 705
consensus_11792#1 TTGTGGTGAATGGAAAAGTAGTAGCAGGAGTCATGGGAAGTCCTAATTGGGCCAGTGATA 765
consensus_11792#2 ------------------TAGTAGCAGGAGTCATGGGAAGTCCTAATGGGGCCAGTGATA 42
consensus_11792#0 TTGTGGTAAATGAAAAGGTAGTAGCAGGAGTGATGGGATGTCCTAATTGGTCTAATGCTA 765
************* ****** ******** ** * * ** **
consensus_11792#1 CCATAGCCAACAGAAAAGATGACAGCATTGCTTCCCGTTATGATCGTGGGATCCTTATGA 825
consensus_11792#2 CCATAGCCAACAGAAAAGATGACAGCATTGCTTCCCGTTATGATCGTGGGATCCTTATGA 102
consensus_11792#0 CCATAGCCAGCAGAAAAGAAGACAGCGCTGCTGCCCAACCTGATCATGGGATCCTTATGA 825
********* ********* ****** **** *** ***** **************
consensus_11792#1 TTGCTCATGAGGGTTGTGGTGCTTGGACTAAGCGCCTGTATGATGAGTTTGGCCAGTTCA 885
consensus_11792#2 TTGCTCATGAGGGTTGTGGTGCTTGGACTAAGCGCCTGTATGATGAGTTTGGCCAGTTCA 162
consensus_11792#0 TTGCTCATGTGGGCTGTGGAACTTGGTCTAGGCATTTGTCTGTCGATATTGGCCAGTTCA 885
********* *** ***** ***** *** ** *** ** ** ************
consensus_11792#1 CTACGTCAAAGGATACTTGGAACAGATGCTTCGTGGATTCTTGTTCTGTTGTACACAAGG 945
consensus_11792#2 CTACGTCAAAGGATACTTGGAACAGATGCTTCGTGGATTCTTGTTCTGTTGTACACAAGG 222
consensus_11792#0 CTACGGCACAGAGTACTTGGAATAGATGCTTAGTGGATTCTTGTTCAGTTGTGAACATGG 945
***** ** ** ********* ******** ************** ***** *** **
consensus_11792#1 CACGCTATTGCCTTTCCGATAACCAAACCTGGAATATGATACCACTATCTGTTGTGTTCA 1005
consensus_11792#2 CACGCTATTGCCTTTCCGATAACCAAACCTGGAATATGATACCACTATCTGTTGTGTTCA 282
consensus_11792#0 CACGCTTTTGCATTCCTGATAGCCAAACCTGGAATATGATACCGCTATCTGTTCTCTTCA 1005
****** **** ** * **** ********************* ********* * ****
consensus_11792#1 ACTCAACGACGGATGAATCGAAACCTAGAGATGAGAATGAACTTCTTACTTCATATGTTT 1065
consensus_11792#2 ACTCAACGACGGATGAATCGAAACCTAGAGATGAGAATGAACTTCTTACTTCATATGTTT 342
consensus_11792#0 ACTCAACAATGGATGAATCCAATCCTAGAGATGAGAATGAAATTCTCCTCTTATCTGTTT 1065
******* * ********* ** ****************** **** * ** *****
consensus_11792#1 TCTCTGGCAGTTTGTGCAAGTACCTTACTGTAGCCTATGGGAGAGCCTCAGTTTTCGTCC 1125
consensus_11792#2 TCTCTGGCAGTTTGTGCAAGTACCTTACTGTAGCCTATGGGAGAGCCTCAGTTTTCGTCC 402
consensus_11792#0 ACTGTGGCAGCTTGTGCAAGTACCTAACTGTAGCTTCTGGGAGAGCCTCCGTTTTTGTAC 1125
** ****** ************** ******** * ************ ***** ** *
consensus_11792#1 TTAAAGCACGGACGAAAAGCCTCAAGTCTTGGGATCATACTGTAGGAGTAATTTGTGTGC 1185
consensus_11792#2 TTAAAGCACGGACGAAAAGCCTCAAGTCTTGGGATCATACTGTAGGAGTAATTTGTGTGC 462
consensus_11792#0 TTCGAGCACGGACGAAAAATCTCAAGTCTTGGGATCATGCTGTCGGAGTAATTTGTGTAC 1185
** ************** ****************** **** ************** *
consensus_11792#1 AGGAAGCTGGAGGCCAAGTTACTGACTGGAGAGGGGAACCTTTGGATCTTGAAGCTGACC 1245
consensus_11792#2 AGGAAGCTGGAGGCCAAGTTACTGACTGGAGAGGGGAACCTTTGGATCTTGAAGCTGACC 522
consensus_11792#0 AGGAAGCTGGAGGTCAGATTAGTGACTGGAGTGGGAAACCGTTGGATCTTGCAGCTGACC 1245
************* ** *** ********* *** **** ********** ********
consensus_11792#1 TAACTGGGCGCAGAGACATTTACCCTCATGGTGGCATTCTCATCACCAACGGCGTCCTGC 1305
consensus_11792#2 TAACTGGGCGCAGAGACATTTACCCTCATGGTGGCATTCTCATCACCAACGGCGTCCTGC 582
consensus_11792#0 TAACTGGGCGCAGAGACATTTACCCTTCAGGTGGTGTTCTCGTCACCAACGGTGCTCTGC 1305
************************** ***** ***** ********** * ****
consensus_11792#1 ACAACAAGCTTGCTGAATTGATCAAGGCGAATTACTAAGTAGCTGCAATGTTGCATATAT 1365
consensus_11792#2 ACAACAAGCTTGCTGAATTGATCAAGGCGAATTACTAAGTAGCTGCAATGTTGCATATAT 642
consensus_11792#0 ACGGCAAGCTGGTTGAAATGATCTCAGCAAATCAC-AAGTAGCGGCAAATTT---TGCAT 1361
** ****** * **** ***** ** *** ** ******* **** ** * **
consensus_11792#1 AGCTCCACACATGACACA--TTTTTTTTGGGGTAGCATTTTACCTCACCGACCATCAAGC 1423
consensus_11792#2 AGCTCCACACATGACACA--TTTTTTTTGGGGTAGCATTTTACCTCACCGACCATCAAGC 700
consensus_11792#0 AACTGCGCACATAACACAGATTTTTCTTTTGTTAACATTTTACCTCATCAACCATCAAAA 1421
* ** * ***** ***** ***** ** * ** ************ * ********
consensus_11792#1 TGTATTTGGTCTCTCATCCAGGAGAGAAACCTTGCAAACATGTCCATATCACTTATCACC 1483
consensus_11792#2 TGTATTTGGTCTCTCATCCAGGAGAGAAACCTTGCAAACATGTCCATATCACTTATCACC 760
consensus_11792#0 TGTATTTGGTCTCTCGTTCGGGAGAGAAACCTTGCAAACATGTTCAGATTACTTCCAGTA 1481
*************** * * *********************** ** ** ****
consensus_11792#1 TC-TAATATCAT-TACAGCAACAGATATGCATGACAGAAAAAAAAAGG------------ 1529
consensus_11792#2 TC-TAATATCAT-TACAGCAACAGATATGCATGACAGAATACACTGTTCCCC-------- 810
consensus_11792#0 TCATTACAACATACAACACAACAGATATACATGACAGAAGGCATTGTTCCCCAATGAACA 1541
** * * * *** * ********** ********** *
consensus_11792#1 ------------------------------------------------------------
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 ATAGTACCTGATTACCTGAAGATACATGCAAATATGTTGCTGGTCTAAGTCATCCAACAC 1601
consensus_11792#1 ------------------------------------------------------------
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 CAAATTGCTTGCAGAATTATACAATCTTTTGCCTTCACAATGTGTGAATCTGTTGCATAA 1661
consensus_11792#1 ------------------------------------------------------------
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 TCCTGAAAGTTTGCATGGTTGCATAGCATCCACACACACCTGAAGCTTGTGAGGAGGAGA 1721
consensus_11792#1 ------------------------------------------------------------
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 AAACTTGGACCAATCTGACAGCAGTGCACCATGCAGTGAATCAGGATGCTTTCGGTTTGG 1781
consensus_11792#1 ------------------------------------------------------------
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 CCACCAATTCAAGCCGAAGAAAAGGACACCCAAAAGGTCTGCATCTTTGCCTCTTTGGCT 1841
consensus_11792#1 ------------------------------------------------------------
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 CCATTTCAAGATAACGACCTTCATGTCCTAATGCAAGAATTGGCAGCTTCTAATCATGAT 1901
consensus_11792#1 ------------------------------------------------------------
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 TAGCCCAACAAATTCCATGATCAGCACGCACTTTACTGCTTGCTTACATCCTGAAGATCT 1961
consensus_11792#1 ------------------------------------------------------------
consensus_11792#2 ------------------------------------------------------------
consensus_11792#0 TGCTCTCCATTGACACGTCCTCCAGCTACGAATTTCAGTAGATGGCCTGTAGTTGGATTC 2021
consensus_11792#1 ---------------------------------------------------------
consensus_11792#2 ---------------------------------------------------------
consensus_11792#0 TTGTTGTAATCTATATTGACTTTTTTTTTCTTAAGCATTAATAAGAGCTACTGATCT 2078
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||