cluster # 11793

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Oryza sativa
cluster # 11793 cluster # 11793 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11793#0 length = 1296 sequences # 6
consensus_11793#1 length = 1217 sequences # 1

consensus_11793#2 length = 540 sequences # 1
consensus_11793#3 length = 330 sequences # 1

consensusID : consensus_11793#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1296
fasta sequence

                              [GTTGGTGATCGCTTGGGGCAGCTTCCTTCCTTCCCTCCCAAAATCCACCTCACAACCACACGAGACGAGAGCCAACCGCGACGCATCGTCACATCACAGAGGAGGCGGTGGCCATGGAAGAGAGACCTCGCGATCGCACCGTCGAGGAGGCCGCGGCGTTCTCCGGCGATGAGTCCGATGGGGAATTCGAGTTCCCGTTCGTNAGCAGGGAGACGGACGCCGGGGGCGTGGCCGACGAGCTCTTCGCGGACGGCCGCATCAGGGCGTTCTACCCGGTGTTTGGCCGCGTGCTCGACGACGTGGCGGTGACG-CTG-CGG-GGC-GGCGGCGGAGGAGCGGAGGCCGCCGCTCGGGAGGCTGTTCCTCGAGGAGGGGCGGACCTCGTCCGTCGGGTCGACGTCGTCGTCGTCGTCGTCCACGGACATCGCCGAGCTGGACGGCGTGTCGCCCGACAGCTACTGCGTCTGGGTGCCCGGGTCGTCGCCGGCGTCCTCGCCGTCGCGCCCCCCGCGGAAGAGCGGGTCGACGGGGTCCATCGCGCGGTGGCGCCGCATCAGCGAGCTCGTCGTCGGCCGCAGCCACAGCGACGGCAAGGAGAAGTTCCGCTTCCTCTCCGCGCCGTCGTCCCCGGCCAGGGATCACCCCAAACCGAAGCCCACGACGAAGGGCGGCGCCGCCGCCGCCACCAAGCTCCACACCGAGCTCGACACCATCGCCGCCGGCCACCGGCTGTCCTACTCCCCCAACCACAAGGCGCACGGCGGCGCGACGCGGCGGACGTTCCTGCCGTACCGCCAGGATCTCATGGGCATCTTCGCCAACGTGAACGGCCTCAGCCGGACTCACCACCGCCCCTTCTGATCGCCGGACACAAGCCGTCACCGTCAGGGCGAATGACCACTTCAACTCAAAAAAGTGAGAAAGAGAGATTTCGAGTTTGAATTCTCCGGGATTTGAAGTTTCGAACCTTTGACTTGAAGCCTACTGCA-ATT-TGAAGTTTGTGTGATTAGCGTAATCTATAGCTTTGCTATTGCA-CGGGGGATTAATGAAGTCAAAATTGGAGGCGTGAAGTCAGAACA-GGCGAAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCA-AGTCGGTTTATTGCGAACGACATGTGAAGTTGTGAACGTGGTAGGGAATCACA-CACGGGGAAGTTGTGAGAG-AAAAAAAAAGAAGAGCTTCCA-TGTGATTATTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTAGATTGACAGGAGTCGTTTTTTTCAAAAAAAAAAAAAA]

[+] EMBL AK067056             [GTTGGTGATCGCTTGGGGCAGCTTCCTTCCTTCCCTCCCAAAATCCACCTCACAACCACACGAGACGAGAGCCAACCGCGACGCATCGTCACATCACAGAGGAGGCGGTGGCCATGGAAGAGAGACCTCGCGATCGCACCGTCGAGGAGGCCGCGGCGTTCTCCGGCGATGAGTCCGATGGGGAATTCGAGTTCCCGTTCGTGAGCAGGGAGACGGACGCCGGGGGCGTGGCCGACGAGCTCTTCGCGGACGGCCGCATCAGGGCGTTCTACCCGGTGTTTGGCCGCGTGCTCGACGACGTGGCGGTGACGCCTG CGGCGGC GGCGGCGGAGGAGCGGAGGCCGCCGCTCGGGAGGCTGTTCCTCGAGGAGGGGCGGACCTCGTCCGTCGGGTCGACGTCGTCGTCGTCGTCGTCCACGGACATCGCCGAGCTGGACGGCGTGTCGCCCGACAGCTACTGCGTCTGGGTGCCCGGGTCGTCGCCGGCGTCCTCGCCGTCGCGCCCCCCGCGGAAGAGCGGGTCGACGGGGTCCATCGCGCGGTGGCGCCGCATCAGCGAGCTCGTCGTCGGCCGCAGCCACAGCGACGGCAAGGAGAAGTTCCGCTTCCTCTCCGCGCCGTCGTCCCCGGCCAGGGATCACCCCAAACCGAAGCCCACGACGAAGGGCGGCGCCGCCGCCGCCACCAAGCTCCACACCGAGCTCGACACCATCGCCGCCGGCCACCGGCTGTCCTACTCCCCCAACCACAAGGCGCACGGCGGCGCGACGCGGCGGACGTTCCTGCCGTACCGCCAGGATCTCATGGGCATCTTCGCCAACGTGAACGGCCTCAGCCGGACTCACCACCGCCCCTTCTGATCGCCGGACACAAGCCGTCACCGTCAGGGCGAATGACCACTTCAACTCAAAAAAGTGAGAAAGAGAGATTTCGAGTTTGAATTCTCCGGGATTTGAAGTTTCGAACCTTTGACTTGAAGCCTACTGCA ATT TGAAGTTTGTGTGATTAGCGTAATCTATAGCTTTGCTATTGCA CGGGGGATTAATGAAGTCAAAATTGGAGGCGTGAAGTCAGAACA GGCGAAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCA AGTCGGTTTATTGCGAACGACATGTGAAGTTGTGAACGTGGTAGGGAATCACA CACGGGGAAGTTGTGAGAG AAAAAAAAAGAAGAGCTTCCA TGTGATTATTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTAGATTGACAGGAGTC                       ]
[+] EMBL AU062627             [                                 CCTCCCAAAATCCACCTCACAACCACACGAGACGAGAGCCAACCGCGACGCATCGTCACATCACAGAGGAGGCGGTGGCCATGGAAGAGAGACCTCGCGATCGCACCGTCGAGGAGGCCGCGGCGTTCTCCGGCGATGAGTCCGATGGGGAATTCGAGTTCCCGTTCGTNAGCAGGGAGACGGACGCCGGGGGCGTGGCCGACGAGCTCTTCGCGGACGGCCGCATCAGGGCGTTCTACCCGGTGTTTGGCCGCGTGCTCGACGACGTGGCGGTGACG CTGNCGG GGCGGGCGGCGGAGGAGCGGAGGCCGCCGCTCGGAAGGCTGTTCCTCGAGGAGGGGCGGACCTCGTCCGTCGGGTCGACGTNGTCGTCGTCGTCGTCCACGGACATCGCCGAGCTNGACGGCGTGTC NCCGAAAGCTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU062560             [                                 CCTCCCAAAATCCACCTCACAACCACACGAGACGAGAGCCAACCGCGACGCATCGTCACATCACAGAGGAGGCGGTGGCCATGGAAGAGAGACCTCGCGATCGCACCGTCGAGGAGGCCGCGGCGTTCTCCGGCGATGAGTCCGATGGGGAATTCGAGTTCCCGTTCGTNAGCAGGGAGACGGACGCCGGGGGCGTGGCCGACGAGCTCTTCGCGGACGGCCGCATCAGGGCGTTCTACCCGGTGTTTGGCCGCGTGCTCGACGACGTGGCGGTGACG CTG CGG GGC GGCGGCGGAGGAGCGGAGGCCGCCGCTCGGNAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU108605             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCCCAAACCACAAGGCGCACGGCGGCGCNACGCGGCGGACNTTCCTGCCGTACCGCCAGGATCTCATGGGCATCTTCGCCAACGTGAACGGCCTCAGCCGGACTCACCACCGCCCCTTNTGATCGCCGGACANAAGCCGTCACCGTCAGGGCGAATGACCACTTCAACTCAAAAAAGTGAGAAAGAGAGATTTCGAGTTTGAATTCNCCGGGATTTGAAGTTTCGAACCTTTGACTTGAAGCCTACTGCA ATT TGAAGTTTGTGTGATTAGCGTAATCTATAGCTTTGCTATTGCN CGGGGGATTAATGAAGTCAAAATTGGAGGCGTGAAGTCAGAACA GGCGAAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCA AGTCGGTTTATTGCGAACGACATGTGAAGTTGTGAACGTGGTAGGGAATCACA CACGGGGAAGTTGTGAGAG  AAAAAAAAGAAGAGCTTCCA TGTGATTATTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTAGATTGACAGGAGTCGTTTTTTTCAAAAAAAAAAAAAA]
[+] EMBL AU100689             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CACCGTCAGGGCGAATGACCACTTCAACTCAAAAAAGTGAGAAAGAGAGATTTCGAGTTTGAATTCTCCGGGATTTGAAGTTTCGAACCTTTGACTTGAAGCCTACTGCA ATT TGNAGTTTGTGTGATTAGNGTAATCTATAGCTTTGCTATTGCA CGGGGGATTAATGAAGTCAAAATTGGAGGCGTGAAGTCAGAANA GGCGAAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCA AGTCGGTTTATTGCGAACGACATGTGAAGTTGTGAACGTGGTAGGGAATCACA CACGGGGAAGTTGTGAGAG  AAAAAAAAGAAGAGCTTCCA TGTGATTATTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTAGATTGACAGGAGTNGTTTTTTTCAAAAA         ]
[+] EMBL BI796176             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGAGAGATTTCGA TTTGAATTCTCCGGGATTTGAA TTTCGAACCTTTGACTTGAAGCCTACTGCACATTGTGAAGTTTGTGTGATTAGCGTAATCTATAGCTTTGCTATTGCACCGGGGGATTAATGAAGTCCAAATTGGAGGCGTGAAGTCAGAACACGGCGAAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCACAGTCGGTTTATTGCGAACGACATGTGAAGTTGTGAACGTGGTAGGGAATCACACCCCGGGGAAGTTGTGAGAGAAAAAAAAAAGAAGAGCTTCCACTGTGATTATTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTAGATTGACCGGAGTCGTTTTTTTCCCAAAAAAAAAA  ]




>consensus_11793#0
GTTGGTGATCGCTTGGGGCAGCTTCCTTCCTTCCCTCCCAAAATCCACCTCACAACCACA
CGAGACGAGAGCCAACCGCGACGCATCGTCACATCACAGAGGAGGCGGTGGCCATGGAAG
AGAGACCTCGCGATCGCACCGTCGAGGAGGCCGCGGCGTTCTCCGGCGATGAGTCCGATG
GGGAATTCGAGTTCCCGTTCGTNAGCAGGGAGACGGACGCCGGGGGCGTGGCCGACGAGC
TCTTCGCGGACGGCCGCATCAGGGCGTTCTACCCGGTGTTTGGCCGCGTGCTCGACGACG
TGGCGGTGACGCTGCGGGGCGGCGGCGGAGGAGCGGAGGCCGCCGCTCGGGAGGCTGTTC
CTCGAGGAGGGGCGGACCTCGTCCGTCGGGTCGACGTCGTCGTCGTCGTCGTCCACGGAC
ATCGCCGAGCTGGACGGCGTGTCGCCCGACAGCTACTGCGTCTGGGTGCCCGGGTCGTCG
CCGGCGTCCTCGCCGTCGCGCCCCCCGCGGAAGAGCGGGTCGACGGGGTCCATCGCGCGG
TGGCGCCGCATCAGCGAGCTCGTCGTCGGCCGCAGCCACAGCGACGGCAAGGAGAAGTTC
CGCTTCCTCTCCGCGCCGTCGTCCCCGGCCAGGGATCACCCCAAACCGAAGCCCACGACG
AAGGGCGGCGCCGCCGCCGCCACCAAGCTCCACACCGAGCTCGACACCATCGCCGCCGGC
CACCGGCTGTCCTACTCCCCCAACCACAAGGCGCACGGCGGCGCGACGCGGCGGACGTTC
CTGCCGTACCGCCAGGATCTCATGGGCATCTTCGCCAACGTGAACGGCCTCAGCCGGACT
CACCACCGCCCCTTCTGATCGCCGGACACAAGCCGTCACCGTCAGGGCGAATGACCACTT
CAACTCAAAAAAGTGAGAAAGAGAGATTTCGAGTTTGAATTCTCCGGGATTTGAAGTTTC
GAACCTTTGACTTGAAGCCTACTGCAATTTGAAGTTTGTGTGATTAGCGTAATCTATAGC
TTTGCTATTGCACGGGGGATTAATGAAGTCAAAATTGGAGGCGTGAAGTCAGAACAGGCG
AAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCAAGTCGGTTTATTGCGAACGACATG
TGAAGTTGTGAACGTGGTAGGGAATCACACACGGGGAAGTTGTGAGAGAAAAAAAAAGAA
GAGCTTCCATGTGATTATTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTAG
ATTGACAGGAGTCGTTTTTTTCAAAAAAAAAAAAAA

consensusID : consensus_11793#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1217
fasta sequence

                              [CGTCGTCGCCTCTCGTCTACTCCTCCTCCTATCTCTCAATTCTCATTCCTTCCCCCTCTCCTGCCACCATGGAGGAGAGGATTCCAGAGCCGCAAGATCCCACCGCCGACGTCGCCGCTGACGTGCTGCCGGCGGAGGCTTCTTCCAGCGACGTGACGACGACGGGAGTGGAGGAGGAATCTGATTCCGATGGGGAGTTCGAGTTCGAGTTCCCCTTCGTCAGCAGGGACTCCCCCGCGGGCACCGCCGCCGTGGCCGACGACCTGTTCGCCGACGGCCGCATCAAGCCGTTCTACCCGGTTTTCGGCCGCGCCGGCGCCGGAGGAGGAGGCGATCGCCAGCAGCATCTGGCCAAGGACGACGCTGCGGCGACGGTGCCGCCGCGGACGAGGGGCCCGCTCGGGCGGCTCTTCCTCGAGGAGTCCCGTGGTTCGTTCGACAGGTGGTCCACGTCCACGTCGTCGTCGTCGTCGTCTTCCGCGCCGGCGTCCGACGAGGGCGGCCTGGACGGCGCGCCGCCGGAGAGCTACTGTCTCTGGACGCCCGGCGCCGGCGCCGGCTCCGCCTCGGCATCGGCCTCCCCGCGCCCGCCCAGGAAGAGCGGCTCAATGGGGTCCATGGCGCGGTGGCGCCGCATCAGCGAGCTCGTCGTCGGCCGCAGCCACAGCGACGGCAAGGAGAAGTTCCTGTTCCTCCCCATCCCGCCGCCCAGTAGCAAGGAGAACGACGTCGAACACTTCAAGCCCAAACCCAAACCACCCAAGCCGACGCCGGCAAGCGGCCGCAAGACGGCACAGGCCGCCGCCGCAGAGATCGACACGGTCGCCGCCATCCACAGGATAGCTTACGGCGCTAAGGGCGGTGGCGCCACCGGCACCAGCGCCGGCGGGGGCACGCCGCGGCGGACGTTCTTGCCTTACCGGGAAGAGCTCGTCGGCCTCTTCGCCAACGTGAACGGCATCAGCCGCAGCCACCCGCATCCGTTCTAATTAATTTTACAGTGTTTGGTTCTGCATATATTGATAGTCAATTAATCACGTGATTAGGTTAATTAATTACGGCTTAATGTGGACTATGAACAGTGTGAAGTCAGTGACTTAACTGGCCTTTGTCTTTCTCGGACAGAGTGTGAACGCCTACGGGTGGCGCGAGAAAAACCTCCATTAGACAAGGTTTTGTACACCCGAGTTTGTACATGTGCAATAGCAAATTCATTA]

[+] EMBL AK108425             [CGTCGTCGCCTCTCGTCTACTCCTCCTCCTATCTCTCAATTCTCATTCCTTCCCCCTCTCCTGCCACCATGGAGGAGAGGATTCCAGAGCCGCAAGATCCCACCGCCGACGTCGCCGCTGACGTGCTGCCGGCGGAGGCTTCTTCCAGCGACGTGACGACGACGGGAGTGGAGGAGGAATCTGATTCCGATGGGGAGTTCGAGTTCGAGTTCCCCTTCGTCAGCAGGGACTCCCCCGCGGGCACCGCCGCCGTGGCCGACGACCTGTTCGCCGACGGCCGCATCAAGCCGTTCTACCCGGTTTTCGGCCGCGCCGGCGCCGGAGGAGGAGGCGATCGCCAGCAGCATCTGGCCAAGGACGACGCTGCGGCGACGGTGCCGCCGCGGACGAGGGGCCCGCTCGGGCGGCTCTTCCTCGAGGAGTCCCGTGGTTCGTTCGACAGGTGGTCCACGTCCACGTCGTCGTCGTCGTCGTCTTCCGCGCCGGCGTCCGACGAGGGCGGCCTGGACGGCGCGCCGCCGGAGAGCTACTGTCTCTGGACGCCCGGCGCCGGCGCCGGCTCCGCCTCGGCATCGGCCTCCCCGCGCCCGCCCAGGAAGAGCGGCTCAATGGGGTCCATGGCGCGGTGGCGCCGCATCAGCGAGCTCGTCGTCGGCCGCAGCCACAGCGACGGCAAGGAGAAGTTCCTGTTCCTCCCCATCCCGCCGCCCAGTAGCAAGGAGAACGACGTCGAACACTTCAAGCCCAAACCCAAACCACCCAAGCCGACGCCGGCAAGCGGCCGCAAGACGGCACAGGCCGCCGCCGCAGAGATCGACACGGTCGCCGCCATCCACAGGATAGCTTACGGCGCTAAGGGCGGTGGCGCCACCGGCACCAGCGCCGGCGGGGGCACGCCGCGGCGGACGTTCTTGCCTTACCGGGAAGAGCTCGTCGGCCTCTTCGCCAACGTGAACGGCATCAGCCGCAGCCACCCGCATCCGTTCTAATTAATTTTACAGTGTTTGGTTCTGCATATATTGATAGTCAATTAATCACGTGATTAGGTTAATTAATTACGGCTTAATGTGGACTATGAACAGTGTGAAGTCAGTGACTTAACTGGCCTTTGTCTTTCTCGGACAGAGTGTGAACGCCTACGGGTGGCGCGAGAAAAACCTCCATTAGACAAGGTTTTGTACACCCGAGTTTGTACATGTGCAATAGCAAATTCATTA]




>consensus_11793#1
CGTCGTCGCCTCTCGTCTACTCCTCCTCCTATCTCTCAATTCTCATTCCTTCCCCCTCTC
CTGCCACCATGGAGGAGAGGATTCCAGAGCCGCAAGATCCCACCGCCGACGTCGCCGCTG
ACGTGCTGCCGGCGGAGGCTTCTTCCAGCGACGTGACGACGACGGGAGTGGAGGAGGAAT
CTGATTCCGATGGGGAGTTCGAGTTCGAGTTCCCCTTCGTCAGCAGGGACTCCCCCGCGG
GCACCGCCGCCGTGGCCGACGACCTGTTCGCCGACGGCCGCATCAAGCCGTTCTACCCGG
TTTTCGGCCGCGCCGGCGCCGGAGGAGGAGGCGATCGCCAGCAGCATCTGGCCAAGGACG
ACGCTGCGGCGACGGTGCCGCCGCGGACGAGGGGCCCGCTCGGGCGGCTCTTCCTCGAGG
AGTCCCGTGGTTCGTTCGACAGGTGGTCCACGTCCACGTCGTCGTCGTCGTCGTCTTCCG
CGCCGGCGTCCGACGAGGGCGGCCTGGACGGCGCGCCGCCGGAGAGCTACTGTCTCTGGA
CGCCCGGCGCCGGCGCCGGCTCCGCCTCGGCATCGGCCTCCCCGCGCCCGCCCAGGAAGA
GCGGCTCAATGGGGTCCATGGCGCGGTGGCGCCGCATCAGCGAGCTCGTCGTCGGCCGCA
GCCACAGCGACGGCAAGGAGAAGTTCCTGTTCCTCCCCATCCCGCCGCCCAGTAGCAAGG
AGAACGACGTCGAACACTTCAAGCCCAAACCCAAACCACCCAAGCCGACGCCGGCAAGCG
GCCGCAAGACGGCACAGGCCGCCGCCGCAGAGATCGACACGGTCGCCGCCATCCACAGGA
TAGCTTACGGCGCTAAGGGCGGTGGCGCCACCGGCACCAGCGCCGGCGGGGGCACGCCGC
GGCGGACGTTCTTGCCTTACCGGGAAGAGCTCGTCGGCCTCTTCGCCAACGTGAACGGCA
TCAGCCGCAGCCACCCGCATCCGTTCTAATTAATTTTACAGTGTTTGGTTCTGCATATAT
TGATAGTCAATTAATCACGTGATTAGGTTAATTAATTACGGCTTAATGTGGACTATGAAC
AGTGTGAAGTCAGTGACTTAACTGGCCTTTGTCTTTCTCGGACAGAGTGTGAACGCCTAC
GGGTGGCGCGAGAAAAACCTCCATTAGACAAGGTTTTGTACACCCGAGTTTGTACATGTG
CAATAGCAAATTCATTA

consensusID : consensus_11793#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [ACTGGGCATCTTCCCCACGTGAACGGCCTCAGCCGGACTCACCACCGCCCCTTCTGATCGCCGGACACACAGCCGTCACCGTCAGGGCGAATGACCACTTCACTCCAAAAAGTGAGAAAGAGAGATTTCGAGTTTGAATTCTCCGGGATTTGAAGTTTCGAACCTTTGACTTGAAGCCTACTGCCATTTGAAGTTTGTGTGATTAGCGTAATCTATAGCTTTGCTATTGCACCGGGGGATTAATGAAGTCCAAATTGGAGGCGTGAAGTCAGAACACGGCGAAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCAAGTCGGTTTATTGCGAACGACATGTGAAGTTGTGAACGTGGTAGGGAATCACACACCGGGGAAGTTGTGAGAGAAAAAAAAAAGAAGAGCTTCCATGTGATTATTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTAGATTGACCGGAGTCGTTTTTTTCCCCCTTGTTTGCACATCTAACTACTGGAGTAGTAGTGTTGCTTTTTCTGCAAAAA]

[+] EMBL BI808276             [ACTGGGCATCTTCCCCACGTGAACGGCCTCAGCCGGACTCACCACCGCCCCTTCTGATCGCCGGACACACAGCCGTCACCGTCAGGGCGAATGACCACTTCACTCCAAAAAGTGAGAAAGAGAGATTTCGAGTTTGAATTCTCCGGGATTTGAAGTTTCGAACCTTTGACTTGAAGCCTACTGCCATTTGAAGTTTGTGTGATTAGCGTAATCTATAGCTTTGCTATTGCACCGGGGGATTAATGAAGTCCAAATTGGAGGCGTGAAGTCAGAACACGGCGAAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCAAGTCGGTTTATTGCGAACGACATGTGAAGTTGTGAACGTGGTAGGGAATCACACACCGGGGAAGTTGTGAGAGAAAAAAAAAAGAAGAGCTTCCATGTGATTATTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTAGATTGACCGGAGTCGTTTTTTTCCCCCTTGTTTGCACATCTAACTACTGGAGTAGTAGTGTTGCTTTTTCTGCAAAAA]




>consensus_11793#2
ACTGGGCATCTTCCCCACGTGAACGGCCTCAGCCGGACTCACCACCGCCCCTTCTGATCG
CCGGACACACAGCCGTCACCGTCAGGGCGAATGACCACTTCACTCCAAAAAGTGAGAAAG
AGAGATTTCGAGTTTGAATTCTCCGGGATTTGAAGTTTCGAACCTTTGACTTGAAGCCTA
CTGCCATTTGAAGTTTGTGTGATTAGCGTAATCTATAGCTTTGCTATTGCACCGGGGGAT
TAATGAAGTCCAAATTGGAGGCGTGAAGTCAGAACACGGCGAAATGTGGGGGATTCGCTG
AGGAATACAGCTCTGCAAGTCGGTTTATTGCGAACGACATGTGAAGTTGTGAACGTGGTA
GGGAATCACACACCGGGGAAGTTGTGAGAGAAAAAAAAAAGAAGAGCTTCCATGTGATTA
TTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTAGATTGACCGGAGTCGTTT
TTTTCCCCCTTGTTTGCACATCTAACTACTGGAGTAGTAGTGTTGCTTTTTCTGCAAAAA

consensusID : consensus_11793#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [GACTTGAAGCCTACTGCAATTTGAAGTTTGTGTGATTAGCGTAATCTATAGCTTTGCTATTGCACGGGGGATTAATGAAGTCAAAATTGGAGGCGTGAAGTCAGAACAGGCGAAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCAAGTCGGTTTATTGCGAACGACATGTGAAGTTGTGAACGTGGTAGGGAATCACACACGGGGAAGTTGTGAGAGAAAAAAAAGAAGAGCTTCCATGTGATTATTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTAGATTGACAGGAGTCGTTTTTTTCCCAANNNNNNNNNNNNN]

[+] EMBL CA755987             [GACTTGAAGCCTACTGCAATTTGAAGTTTGTGTGATTAGCGTAATCTATAGCTTTGCTATTGCACGGGGGATTAATGAAGTCAAAATTGGAGGCGTGAAGTCAGAACAGGCGAAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCAAGTCGGTTTATTGCGAACGACATGTGAAGTTGTGAACGTGGTAGGGAATCACACACGGGGAAGTTGTGAGAGAAAAAAAAGAAGAGCTTCCATGTGATTATTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTAGATTGACAGGAGTCGTTTTTTTCCCAANNNNNNNNNNNNN]




>consensus_11793#3
GACTTGAAGCCTACTGCAATTTGAAGTTTGTGTGATTAGCGTAATCTATAGCTTTGCTAT
TGCACGGGGGATTAATGAAGTCAAAATTGGAGGCGTGAAGTCAGAACAGGCGAAATGTGG
GGGATTCGCTGAGGAATACAGCTCTGCAAGTCGGTTTATTGCGAACGACATGTGAAGTTG
TGAACGTGGTAGGGAATCACACACGGGGAAGTTGTGAGAGAAAAAAAAGAAGAGCTTCCA
TGTGATTATTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTAGATTGACAGG
AGTCGTTTTTTTCCCAANNNNNNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      GTTGGTGATCGCTTGGGGCAGCTTCCTTCCTTCCCTCCCAAAATCCACCTCACAACCACA 60
consensus_11793#1      ------------------------------------------------------------
                                                                                   

consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      CGAGACGAGAGCCAACCGCGACGCATCGTCACATCACAGAGGAGGCGGTGGCCATGGAAG 120
consensus_11793#1      ------------------------------------------------------------
                                                                                   

consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      AGAGACCTCGCGATCGCACCGTCGAGGAGGCCGCGGCGTTCTCCGGCGATGAGTCCGATG 180
consensus_11793#1      ------------------------------------------------------------
                                                                                   

consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      GGGAATTCGAGTTCCCGTTCGTNAGCAGGGAGACGGACGCCGGGGGCGTGGCCGACGAGC 240
consensus_11793#1      -------------CGTCGTCGCCTCTCGTCTACTCCTCCTCCTATCTCTCAATTCTCATT 47
                                                                                   

consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      TCTTCGCGGACGGCCGCATCAGGGCGTTCTACCCGGTGTTTGGCCGCGTGCTCGACGACG 300
consensus_11793#1      CCTTCCCCCTCTCCTGCCACCATGGAGGAGAGGATTCCAGAGCCGCAAGATCCCACCGCC 107
                                                                                   

consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      TGGCGGTGACGCTGCGGGGCGGCGGCGGAGGAGCGGAGGCCGCCGCTCGGGAGGCTGTTC 360
consensus_11793#1      GACGTCGCCGCTGACGTGCTGCCGGCGGAGGCTTCTTCCAGCGACGTGACGACGACGGGA 167
                                                                                   

consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      CTCGAGGAGGGGCGGACCTCGTCCGTCGGGTCGACGTCGTCGTCGTCGTCGTCCACGGAC 420
consensus_11793#1      GTGGAGGAGGAATCTGATTCCGATGGGGAGTTCGAGTTCGAGTTCCCCTTCGTCAGCAGG 227
                                                                                   

consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      ATCGCCGAGCTGGACGGCGTGTCGCCCGACAGCTACTGCGTCTGGGTGCCCGGGTCGTCG 480
consensus_11793#1      GACTCCCCCGCGGGCACCGCCGCCGTGGCCGACGACCTGTTCGCCGACGGCCGCATCAAG 287
                                                                                   

consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      CCGGCGTCCTCGCCGTCGCGCCCCCCGCGGAAGAGCGGGTCGACGGGGTCCATCGCGCGG 540
consensus_11793#1      CCGTTCTACCCGGTTTTCGGCCGCGCCGGCGCCGGAGGAGGAGGCGATCGCCAGCAGCAT 347
                                                                                   

consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      TGGCGCCGCATCAGCGAGCTCGTCGTCGGCCGCAGCCACAGCGACGGCAAGGAGAAGTTC 600
consensus_11793#1      CTGGCCAAGGACGACGCTGCGGCGACGGTGCCGCCGCGGACGAGGGGCCCGCTCGGGCGG 407
                                                                                   

consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      CGCTTCCTCTCCGCGCCGTCGTCCCCGGCCAGGGATCACCCCAAACCGAAGCCCACGACG 660
consensus_11793#1      CTCTTCCTCGAGGAGTCCCGTGGTTCGTTCGACAGGTGGTCCACGTCCACGTCGTCGTCG 467
                                                                                   

consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      AAGGGCGGCGCCGCCGCCGCCACCAAGCTCCACACCGAGCTCGACACCATCGCCGCCGGC 720
consensus_11793#1      TCGTCGTCTTCCGCGCCGGCGTCCGACGAGGGCGGCCTGGACGGCGCGCCGCCGGAGAGC 527
                                                                                   

consensus_11793#2      ------------------------------------------------------------
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      CACCGGCTGTCCTACTCCCCCAACCACAAGGCGCACGGCGGCGCGACGCGGCGGACGTTC 780
consensus_11793#1      TACTGTCTCTGGACGCCCGGCGCCGGCGCCGGCTCCGCCTCGGCATCGGCCTCCCCGCGC 587
                                                                                   

consensus_11793#2      --------------------ACTGGGCATCTTCCCCA-CGTGAACGGCCTCAGCCGGACT 39
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      CTGCCGTACCGCCAGGATCTCATGGGCATCTTCGCCAACGTGAACGGCCTCAGCCGGACT 840
consensus_11793#1      CCGCCCAGGAAGAGCGGCTCAATGGGGTCCATGGCGCGGTGGCGCCGCATCAGCGAGCTC 647
                                                                                   

consensus_11793#2      CACCACCGCCCCTTCTGATCGCCGGACACACAGCCGTCACCGTCAGGGCGAATGACCACT 99
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      CACCACCGCCCCTTCTGATCGCCGGACACA-AGCCGTCACCGTCAGGGCGAATGACCACT 899
consensus_11793#1      GTCGTCGGCCGCAGCCACAGCGACGGCAAGGAGAAGTTCCTGTTCCTCCCCATCCCGCCG 707
                                                                                   

consensus_11793#2      TCA-CTCCAAAAAGTGAGAAAG--AGAGATTTCGAGTTTGAATTC----TCCGGGATTTG 152
consensus_11793#3      ------------------------------------------------------------
consensus_11793#0      TCAACTCAAAAAAGTGAGAAAG--AGAGATTTCGAGTTTGAATTC----TCCGGGATTTG 953
consensus_11793#1      CCCAGTAGCAAGGAGAACGACGTCGAACACTTCAAGCCCAAACCCAAACCACCCAAGCCG 767
                                                                                   

consensus_11793#2      AAGTTTCGAACCTTTGACTTGA------AGCCTACTGCCATTTGAAGTTTGTGTGATTAG 206
consensus_11793#3      ---------------GACTTGA------AGCCTACTGCAATTTGAAGTTTGTGTGATTAG 39
consensus_11793#0      AAGTTTCGAACCTTTGACTTGA------AGCCTACTGCAATTTGAAGTTTGTGTGATTAG 1007
consensus_11793#1      ACGCCGGCAAGCGGCCGCAAGACGGCACAGGCCGCCGCCGCA-GAGATCGACACGGTCGC 826
                                        *  **      ** *  * **     **  *      * *   

consensus_11793#2      CGTAATCTATAGCTTTGCT-ATTGCACC-GGGGGATTAATGAAGTCCAAATTGGAGGCG- 263
consensus_11793#3      CGTAATCTATAGCTTTGCT-ATTGCAC--GGGGGATTAATGAAGTCAAAATTGGAGGCG- 95
consensus_11793#0      CGTAATCTATAGCTTTGCT-ATTGCAC--GGGGGATTAATGAAGTCAAAATTGGAGGCG- 1063
consensus_11793#1      CGCCATCCACAGGATAGCTTACGGCGCTAAGGGCGGTGGCGCCACCGGCACCAGCGCCGG 886
                       **  *** * **  * *** *  ** *   ***   *   *    *   *   * * ** 

consensus_11793#2      TGAAGTCAGAACACGGCGAAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCAAGTCGG 323
consensus_11793#3      TGAAGTCAGAACA-GGCGAAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCAAGTCGG 154
consensus_11793#0      TGAAGTCAGAACA-GGCGAAATGTGGGGGATTCGCTGAGGAATACAGCTCTGCAAGTCGG 1122
consensus_11793#1      CGGGGGCACGCCGCGGCGGA-CGTTCTTGCCTTACCGGGAAGAGCTCGTCGGCCTCTTCG 945
                        *  * **   *  **** *  **    *  *  * * * *   *   ** **   *  *

consensus_11793#2      TTTATTGCGAACGACATGTGAAGTTGTGAAC-------GTGGTAGGGAATCACACACCGG 376
consensus_11793#3      TTTATTGCGAACGACATGTGAAGTTGTGAAC-------GTGGTAGGGAATCACACAC-GG 206
consensus_11793#0      TTTATTGCGAACGACATGTGAAGTTGTGAAC-------GTGGTAGGGAATCACACAC-GG 1174
consensus_11793#1      CCAAC-GTGAACGGCATCAGCCGCAGCCACCCGCATCCGTTCTAATTAATTTTACAG-TG 1003
                          *  * ***** ***  *  *  *  * *       **  **   ***   ***   *

consensus_11793#2      GGAAGTTGTGAGAGAAAAAAAAAAGAAGAGCTTCCATGT---GATTATTTGTACTTGTAC 433
consensus_11793#3      GGAAGTTGTGAGAGAAAAAAAA--GAAGAGCTTCCATGT---GATTATTTGTACTTGTAC 261
consensus_11793#0      GGAAGTTGTGAGAGAAAAAAAAA-GAAGAGCTTCCATGT---GATTATTTGTACTTGTAC 1230
consensus_11793#1      TTTGGTTCTGCATATATTGATAGTCAATTAATCACGTGATTAGGTTAATTAATTACGGCT 1063
                           *** **     *   * *   **    *  * **    * *** **      *   

consensus_11793#2      ATATGTG---TATGTGTATTATTGGATATGTAGATTGACCGGAGTCGTTTTTTTCCCCCT 490
consensus_11793#3      ATATGTG---TATGTGTATTATTGGATATGTAGATTGACAGGAGTCGTTTTTTTCCCAAN 318
consensus_11793#0      ATATGTG---TATGTGTATTATTGGATATGTAGATTGACAGGAGTCGTTTTTTTCAAAAA 1287
consensus_11793#1      TAATGTGGACTATGAACAGTGTGAAGTCAGTGACTTAACTGGCCTTTGTCTTTCTCGGAC 1123
                         *****   ****   * * *    *  **   ** ** **  *   * ***       

consensus_11793#2      TGTTTGCACAT-CTAACTACTGGAGTAGTAGTGTTGCTTTTTCTGCAAAAA--------- 540
consensus_11793#3      NNNNNNNNNNN-N----------------------------------------------- 330
consensus_11793#0      AAAAAAAAA--------------------------------------------------- 1296
consensus_11793#1      AGAGTGTGAACGCCTACGGGTGGCGCGAGAAAAACCTCCATTAGACAAGGTTTTGTACAC 1183
                                                                                   

consensus_11793#2      ----------------------------------
consensus_11793#3      ----------------------------------
consensus_11793#0      ----------------------------------
consensus_11793#1      CCGAGTTTGTACATGTGCAATAGCAAATTCATTA 1217