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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11796#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 963 fasta sequence
[GAGATTCCCCATCGTTCTGTTCCCGTCGGTGGTCTTCCCCGGCGCGACGGTGCAGCTCCAGGCGTTCGAGTTCCGGTACCGGATCATGGTGCACACGCTGCTCCAGGAGGGGGTCACCAGGTTCGGCGTCGTGTACTCCGGCGGCGGGGTGGGGGGCGGGGTGGCGGCCGGCGAGGTGGGGTGCGTGGCGCACGTGGTGGAGTGCGAGCGGCTCGTCGACGGCCGGTTCTTCCTCACCTGCGTCGGCGGCGACCGGTTCCGCGTCGTCGGCGCCGTCAGGACGAAGCCGTACGTGGTCGCGAGGGTCCAGCCCCTGGCCGACGCGCCGCCCAGCCAAGAACGCGGCGGCGACGGCGGCGGCGACATGGTGCGCCACCTCGTGGAGCGAGTGGAGGAGCAGCTCAAGAACGTGGCGGCGCTGTCGGACAAGCTCGGGTGGAGCCGGCCGCCGCTGCCGTTCCGCGCGACTTGCTCCCCGTCGTCGCTGTCGTTCGCCGTGGCGAGGGAGGTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATTTTTGTAAGTTCCTCGAGCTGTTTTTTGTGGTGAAAACTTTGCATTGAGTAGATGTATTTAGGAGTACTTCATAATGTACAGAAGGATTGATGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACA-CCATGTAACATTGTAGCAAAAAA]
[-] EMBL CB649033 [GAGATTCCCCATCGTTCTGTTCCCGTCGGTGGTCTTCCCCGGCGCGACGGTGCAGCTCCAGGCGTTCGAGTTCCGGTACCGGATCATGGTGCACACGCTGCTCCAGGAGGGGGTCACCAGGTTCGGCGTCGTGTACTCCGGCGGCGGGGTGGGGGGCGGGGTGGCGGCCGGCGAGGTGGGGTGCGTGGCGCACGTGGTGGAGTGCGAGCGGCTCGTCGACGGCCGGTTCTTCCTCACCTGCGTCGGCGGCGACCGGTTCCGCGTCGTCGGCGCCGTCAGGACGAAGCCGTACGTGGTCGCGAGGGTCCAGCCCCTGGCCGACGCGCCGCCCAGCCAAGAACGCGGCGGCGACGGCGGCGGCGACATGGTGCGCCACCTCGTGGAGCGAGTGGAGGAGCAGCTCAAGAACGTGGCGGCGCTGTCGGACAAGCTCGGGTGGAGCCGGCCGCCGCTGCCGTTCCGCGCGACTTGCTCCCCGTCGTCGCTGTCGTTCGCCGTGGCGAGGGAGGTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATTgg ]
[+] EMBL AK105845 [ CGTTCTGTTCCCGTCGGTGGTCTTCCCCGGCGCGACGGTGCAGCTCCAGGCGTTCGAGTTCCGGTACCGGATCATGGTGCACACGCTGCTCCAGGAGGGGGTCACCAGGTTCGGCGTCGTGTACTCCGGCGGCGGGGTGGGGGGCGGGGTGGCGGCCGGCGAGGTGGGGTGCGTGGCGCACGTGGTGGAGTGCGAGCGGCTCGTCGACGGCCGGTTCTTCCTCACCTGCGTCGGCGGCGACCGGTTCCGCGTCGTCGGCGCCGTCAGGACGAAGCCGTACGTGGTCGCGAGGGTCCAGCCCCTGGCCGACGCGCCGCCCAGCCAAGAACGCGGCGGCGACGGCGGCGGCGACATGGTGCGCCACCTCGTGGAGCGAGTGGAGGAGCAGCTCAAGAACGTGGCGGCGCTGTCGGACAAGCTCGGGTGGAGCCAGCCGCCGCTGCCGTTCCGCGCGACTTGCTCCCCGTCGTCGCTGTCGTTCGCCGTGGCGAGGGAGGTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATTTTTGTAAGTTCCTCGAGCTGTTTTTTGTGGTGAAAACTTTGCATTGAGTAGATGTATTTAGGAGTACTTCATAATGTACAGAAGGATTGATGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACA CCATGTA ]
[-] EMBL CB651099 [ TGTTCCCGTCGGTGGTCTTTCCCGGCGCGACGGTGCAGCTCCAGGCGTTCGAGTTCCGGTACCGGATCATGGTGCACACGCTGCTCCAGGAGGGGGTCACCAGGTTCGGCGTCGTGTACTCCGGCGGCGGGGTGGGGGGCGGGGTGGCGGCCGGCGAGGTGGGGTGCGTGGCGCACGTGGTGGAGTGCGAGCGGCTCGTCGACGGCCGGTTCTTCCTCACCTGCGTCGGCGGCGACCGGTTCCGCGTCGTCGGCGCCGTCAGGACGAAGCCGTACGTGGTCGCGAGGGTCCAGCCCCTGGCCGACGCGCCGCCCAGCCAAGAACGCGGCGGCGACGGCGGCGGCGACATGGTGCGCCACCTCGTGGAGCGAGTGGAGGAGCAGCTCAAGAACGTGGCGGCGCTGTCGGACAAGCTCGGGTGGAGCCGGCCGCCGCTGCCGTTCCGCGCGACTTGCTCCCCGTCGTCGCTGTCGTTCGCCGTGGCGAGGGAGGTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGGGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATGTT ]
[-] EMBL CB656327 [ GGGGTGGCGGCCGGCGAGGTGGGGTGCGTGGCGCACGTGGTGGAGTGCGAGCGGCTCGTCGACGGCCGGTTCTTCCTCACCTGCGTCGGCGGCGACCGGTTCCGCGTCGTCGGCGCCGTCAGGACGAAGCCGTACGTGGTCGCGAGGGTCCAGCCCCTGGCCGACGCGCCGCCCAGCCAAGAACGCGGCGGCGACGGCGGCGGCGACATGGTGCGCCACCTCGTGGAGCGAGTGGAGGAGCAGCTCAAGAACGTGGCGGCGCTGTCGGACAAGCTCGGGTGGAGCCGGCCGCCGCTGCCGTTCCGCGCGACTTGCTCCCCGTCGTCGCTGTCGTTCGCCGTGGCGAGGGAGGTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATTTTTGTAAGTTCCTCGAGCTGTTTTTTGTGGTGAAAACTTTGCATTGAGTAGATGTATTTAGGAGTACTTCATAATGTACAGAAGGATTGATGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACA CCATGTAA ]
[+] EMBL BI813758 [ ACAT GTGC CCCCCTC TTGACCGA TGGAGGACCAGCTCAAGAACGT GCGGCGCTGTCGGACAAGCTCGGGTGGAGCC GCC CCGCT CCGTTCCGC CGACTTGCTCCCCGTCGTCGCTGTCGTTCGCCGTGGCGAGGGA GTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATTTTTGTAAGTTCCTCGAGCTGTTTTTTGTGGTGAAAACTTTGCATTGAGTAGATGTATTTAGGAGTACTTCATAATGTACAGAAGGATTGATGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACACCCATGTAACATTGTAGCCAAAAA]
[+] EMBL BI812562 [ TCGTTC CCGTGGCGAGGGA GTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGC GCGGCGC GCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCT GCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATTTTTGTAAGTTCCTCGAGCTTTTTTTTGTGGTGAAAACTTTGCATTGAGTAGATGTATTTAGGAGTACTTCATAATGTACAGAAGGATTGATGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACA CCATGTAACATTGTAGCAAAAAA]
[-] EMBL CF301430 [ TACAGAAGGATTGATGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACA CCATGTAACATTGTAGCAAAAAA]
[+] EMBL CF301431 [ TGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACA CCATGTAACATTGTAGCAAAAA ]
consensusID : consensus_11796#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence
[GACACAGCCTGCTCCGGCTGGACNACNCCGCGGCGCGGCTGGCGCGGGANGGGAAGTACCTGNAACGGAAGAACANGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCNACGACAAGTNNAGACNACGACGATCGAATGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATANGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCACAATTCAGAGTTCANAATTCTAATGTTAATATTTTTGTTAG]
[+] EMBL BE228425 [GACACAGCCTGCTCCGGCTGGACNACNCCGCGGCGCGGCTGGCGCGGGANGGGAAGTACCTGNAACGGAAGAACANGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCNACGACAAGTNNAGACNACGACGATCGAATGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATANGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCACAATTCAGAGTTCANAATTCTAATGTTAATATTTTTGTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11796#0 GAGATTCCCCATCGTTCTGTTCCCGTCGGTGGTCTTCCCCGGCGCGACGGTGCAGCTCCA 60
consensus_11796#1 ------------------------------------------------------------
consensus_11796#0 GGCGTTCGAGTTCCGGTACCGGATCATGGTGCACACGCTGCTCCAGGAGGGGGTCACCAG 120
consensus_11796#1 ------------------------------------------------------------
consensus_11796#0 GTTCGGCGTCGTGTACTCCGGCGGCGGGGTGGGGGGCGGGGTGGCGGCCGGCGAGGTGGG 180
consensus_11796#1 ------------------------------------------------------------
consensus_11796#0 GTGCGTGGCGCACGTGGTGGAGTGCGAGCGGCTCGTCGACGGCCGGTTCTTCCTCACCTG 240
consensus_11796#1 ------------------------------------------------------------
consensus_11796#0 CGTCGGCGGCGACCGGTTCCGCGTCGTCGGCGCCGTCAGGACGAAGCCGTACGTGGTCGC 300
consensus_11796#1 ------------------------------------------------------------
consensus_11796#0 GAGGGTCCAGCCCCTGGCCGACGCGCCGCCCAGCCAAGAACGCGGCGGCGACGGCGGCGG 360
consensus_11796#1 ------------------------------------------------------------
consensus_11796#0 CGACATGGTGCGCCACCTCGTGGAGCGAGTGGAGGAGCAGCTCAAGAACGTGGCGGCGCT 420
consensus_11796#1 ------------------------------------------------------------
consensus_11796#0 GTCGGACAAGCTCGGGTGGAGCCGGCCGCCGCTGCCGTTCCGCGCGACTTGCTCCCCGTC 480
consensus_11796#1 ------------------------------------------------------------
consensus_11796#0 GTCGCTGTCGTTCGCCGTGGCGAGGGAGGTCGTGGAGGACCGGGAGGAGCAGCAGGCGCT 540
consensus_11796#1 --------------------------------------------------GACACAGCCT 10
** **
consensus_11796#0 GCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAG 600
consensus_11796#1 GCTCCGGCTGGACNACNCCGCGGCGCGGCTGGCGCGGGANGGGAAGTACCTGNAACGGAA 70
************* ** * ***************** ** **** ******* * ****
consensus_11796#0 GAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTG 660
consensus_11796#1 GAACANGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTG 130
** ** ******************************************************
consensus_11796#0 CAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGT 720
consensus_11796#1 CNACGACAAGTNNAGACNACGACGATCGAATGAGTACTCCGTTAATAACCGGCCACTGGT 190
* ********* **** *********** ******************************
consensus_11796#0 GAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCA 780
consensus_11796#1 GAGGACTCCCATGGCCATANGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCACAATTCA 250
******************* ********************************* ******
consensus_11796#0 GAGTTCAGAGTTCTAATGTAAATATTTTTGTAAGTTCCTCGAGCTGTTTTTTGTGGTGAA 840
consensus_11796#1 GAGTTCANAATTCTAATGTTAATATTTTTGTTAG-------------------------- 284
******* * ********* *********** **
consensus_11796#0 AACTTTGCATTGAGTAGATGTATTTAGGAGTACTTCATAATGTACAGAAGGATTGATGTA 900
consensus_11796#1 ------------------------------------------------------------
consensus_11796#0 CCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACACCATGTAACATTGTAGCAAA 960
consensus_11796#1 ------------------------------------------------------------
consensus_11796#0 AAA 963
consensus_11796#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||