These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11799#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1182 fasta sequence [TGACTGGACTGAAGGAGTAGAAACTATTTTTACCACTTCATTCTCCATTCAGTTTGCTTAGCGAGTTAGGGGGGAAAAAAGCTACGAGGTTTTCTTGGATCATCCGACGAACTCGAGTGATTGATTGATTTACCCAAGTCTGTTATTGTAGTGATTTACCCGAGGTTTTTTGTTTTCGTTTTCGTTCTTGCGAGGGGTGGGTGAGAGATTACAGGGGGGATTTTCTCCGACTTGGAAGGAGCAGAGAAAGATTTGCGTTTAGAAGATCTGAGGTCAGGTTACTCCACTAATTTCTACCACGAAACAGAGTAGAGTAGGATTTGACATCGGAAGGGGAAACAAAAATGGCAATT-GGACAGGCGAAGAC-GAAGAGCTCTCTCTCCAC-GAGCTTGAGC-TTCTCTTGCAGCAGCAC-GAGGATCC-TGGGG-AGGAAGAGGGTCGCCGTCTCGCC-GGCTCCGCCCCCCTCCGGCGGCCCGCACTCGCCGGTGCGGACTCTCC-GCAAGCAGCGGAGCACCAGGCTCCACATGGACGACGCCGTCAGCCTGCTCGAATCACTGCCTCAAGATGTCTTGATTAAGGTCTTGTGCAAGGTGAACCACAGTGA-CCTGAGGCCGCTGCTCCTAGTGTCAAAACAAGTTAGCGAAGCAACGGTGGTTGCGAGAGAGCAGCATTTCGCGTTTGCGACGCCAT-CCTCGAAGGCCGCCTTGAGAGGCGGCGAGGAGGAAGAAGAAGCTCCCGGGGCGCCCAAGCTGCAACGCAGGGTTGCGAGGTCGTCGCCCGTCTGGGGCAAGAACCTTGCCAGCATCAGCGTCAACCTGTTCGAGGCGTTCGAATCGGAGGTTGTAGAGATGTAAATATTATTACAGGACACGCGCTTCAGTTTCAGCAATTCAGCTTATACTTTGCTCGTGTATATTTTCATCCTTTTAGTGTTCTTAGTGTTAGGTTATAAAATGTTAGGAGTGCATTTTGTAGCTCACGTCAAACAGAGGAGAAAAAAAACTTAGGTAGTGATACTGTTATTAATCTCATACTAGTAGCATGTGTTAGGAGTAGCTATAAATGGTCGTTCTTCAATGCTGTGATTGAAGAGAACACGACG-CCTTGTGTAATAAGTTTCATATAAGCATCGAATGCATGAATTATCAGGAGATCTCTCTTCTTTTTTATGTGTAAAAAAAAAAA] [+] EMBL CF309717 [TGACTGGACTGAAGGAGTAGAAACTATTTTTACCACTTCATTCTCCATTCAGTTTGCTTAGCGAGTTAGGGGGGAAAAAAGCTACGAGGTTTTCTTGGATCATCCGACGAACTCGAGTGATTGATTGATTTACCCAAGTCTGTTATTGTAGTGATTTACCCGAGGTTTTTTGTTTTCGTTTTCGTTCTTGCGAGGGGTGGGTGAGAGATTACAGGGGGGATTTTCTCCGACTTGGAAGGAGCAGAGAAAGATTTGCGTTTAGAAGATCTGAGGTCAGGTTACTCCACTAATTTCTACCACGAAACAGAGTAGAGTAGGATTTGACATCGGAAGGGGAAACAAAAATGGCAATT GGACAGGCGAAGAC GAAGAGCTCTCTCTCCAC GAGCTTGAGC TTCTCTTGCAGCAGCAC GAGGATCC TGGGG AGAAAGAGGTTCGCCGTCTCGCC GGCTCCGCCCCCCTCCGGCGGCCCGCACTCGCCGGTGCGGACTCTCC GCAAGCAGCGGAGCACCAGGCTCCACATGGACGACGCCGTCAGCCTGCTCGAATCACTGCCTCAAG ] [+] EMBL CF311837 [ ACCACTTCATTCTCCATTCAGTTTGCTTAGCGAGTTAGGGGGGAAAAAAGCTACGAGGTTTTCTTGGATCATCCGACGAACTCGAGTGATTGATTGATTTACCCAAGTCTGTTATTGTAGTGATTTACCCGAGGTTTTTTGTTTTCGTTTTCGTTCTTGCGAGGGGTGGGTGAGAGATTACAGGGGGGATTTTCTCCGACTTGGAAGGAGCAGAGAAAGATTTGCGTTTAGAAGATCTGAGGTCAGGTTACTCCACTAATTTCTACCACGAAACAGAGTAGAGTAGGATTTGACATCGGAAGGGGAAACAAAAATGGCAATT GGACAGGCGAAGAC GAAGAGCTCTCTCTCCAC GAGCTTGAGC TTCTCTTGCAGCAGCAC GAGGATCC ] [+] EMBL AK072982 [ CACTTCATTCTCCATTCAGTTTGCTTAGCGAGTTAGGGGGGAAAAAAGCTACGAGGTTTTCTTGGATCATCCGACGAACTCGAGTGATTGATTGATTTACCCAAGTCTGTTATTGTAGTGATTTACCCGAGGTTTTTTGTTTTCGTTTTCGTTCTTGCGAGGGGTGGGTGAGAGATTACAGGGGGGATTTTCTCCGACTTGGAAGGAGCAGAGAAAGATTTGCGTTTAGAAGATCTGAGGTCAGGTTACTCCACTAATTTCTACCACGAAACAGAGTAGAGTAGGATTTGACATCGGAAGGGGAAACAAAAATGGCAATT GGACAGGCGAAGAC GAAGAGCTCTCTCTCCAC GAGCTTGAGC TTCTCTTGCAGCAGCAC GAGGATCC TGGGG AGGAAGAGGGTCGCCGTCTCGCC GGCTCCGCCCCCCTCCGGCGGCCCGCACTCGCCGGTGCGGACTCTCC GCAAGCAGCGGAGCACCAGGCTCCACATGGACGACGCCGTCAGCCTGCTCGAATCACTGCCTCAAGATGTCTTGATTAAGGTCTTGTGCAAGGTGAACCACAGTGA CCTGAGGCCGCTGCTCCTAGTGTCAAAACAAGTTAGCGAAGCAACGGTGGTTGCGAGAGAGCAGCATTTCGCGTTTGCGACGCCAT CCTCGAAGGCCGCCTTGAGAGGCGGCGAGGAGGAAGAAGAAGCTCCCGGGGCGCCCAAGCTGCAACGCAGGGTTGCGAGGTCGTCGCCCGTCTGGGGCAAGAACCTTGCCAGCATCAGCGTCAACCTGTTCGAGGCGTTCGAATCGGAGGTTGTAGAGATGTAAATATTATTACAGGACACGCGCTTCAGTTTCAGCAATTCAGCTTATACTTTGCTCGTGTATATTTTCATCCTTTTAGTGTTCTTAGTGTTAGGTTATAAAATGTTAGGAGTGCATTTTGTAGCTCACGTCAAACAGAGGAGAAAAAAAACTTAGGTAGTGATACTGTTATTAATCTCATACTAGTAGCATGTGTTAGGAGTAGCTATAAATGGTCGTTCTTCAATGCTGTGATTGAAGAGAACACGACG CCTTGTGTAATAAGTTTCATATAAGCATCGAATGCATGAATTATCAGGAGATCTCTCTTCT ] [+] EMBL C28448 [ TTTGCTTAGCGAGTTAGGGGGGAAAAAAGCTACGAGGTTTTCTTGGATCATCCGACGAACTCGAGTGATTGATTGATTTACCCAAGTCTGTTATTGTAGTGATTTACCCGAGGTTTTTTGTTTTCGTTTTCGTTCTTGCGAGGGGTGGGTGAGAGATTACAGGGGGGATTTTCTCCGACTTGGAAGGAGCAGAGAAAGATTTGCGTTTAGAAGATCTGAGGTCAGGTTACTCCACTAATTTCTACCACGAAACANAGTAGAGTAGGATTTGACATCGGAAGGGG AACAAAAATGGCAATT GGACAGGCG AGAC GAAGAGCTCTCTCTCCAC GAGCTTNAGC TTCTCTTGCAGCA NAC GAGGATCC TGGGG AGGAAGAGGGTCGCCGTCTNGCC GCTCCG CCCCCTCCGG GGCCCG AATTGCCGGTGgg ] [+] EMBL OSC104351 [ GCGAGTTAGGGGGGAAAAAAGCTACGAGGTTTTCTTGGATCATCCGACGAACTCGAGTGATTGATTGATTTACCCAAGTCTGTTATTGTAGTGATTTACCCGAGGTTTTTTGTTTTCGTTTTCGTTCTTGCGAGGGGTGGGTGAGAGATTACAGGGGGGATTTTCTCCGACTTGGAAGGAGCAGAGAAAGATTTGCGTTTAGAAGATCTGAGGTCAGGTTACTCCACTAATTTCTACCACGAAACAGAGTAGAGTAGGATTTGACATCGGAAGGGGAAACAAAAATGGCAATT GGACAGGCGAAGAC GAAGAGCTCTCTCTCCAC GAGCTTNAGC TTCTCTTGCAGCAGCAC GAGGATCC TGGGG AGG ] [+] EMBL C28547 [ GTTAGGGGGGAAAAAAGCTACGAGGTTTTCTTGGATCATCCGACGAACTCGAGTGATTGATTGATTTACCCAAGTCTGTTATTGTAGTGATTTACCCGAGGTTTTTTGTTTTCGTTTTCGTTCTTGCGAGGGGTGGGTGAGAGATTACAGGGGGGATTTTCTCCGACTTGGAAGGAGCAGAGAAAGATTTGCGTTTAGAAGATCTGAGGTCAGGTTACTCCACTAATTTCTACCACGAAACAGAGTAGAGTAGGATTTGACATCGGAAGGGGAAACAAAAATGGCAATTGGGACANGCG AGNCGGAAGAGCTCTCTCTCCACGGAGCTTTAGCTTTCTCTTTCAGCAGCACGGAGGATCCTTGGGGAAGGAAGAGGGTCGCCGTCTTGCCGGGTTCNGCCCCCCTCCGGGGGCCCGAACTTGCCGGT CGGga ] [+] EMBL AU092083 [ CTCTCCGGCAAGCAGCGGAGCACCAGGCTCCACATGGACGACGCCGTCAGCCTGCTCGAATCACTGCCTCAAGATGTCTTGATTAAGGTCTTGTGCAAGGTGAACCACAGTGA CCTGAGGCCGCTGCTCCTAGTGTCAAAACAAGTTAGCGAAGCAACGGTGGTTGCGAGAGAGCAGCATTTCGCGTTTGCGACGCCAT CCTCGAAGGCCGCCTTGAGAGGCGGCGAGGAGGAAGAAGAAGCTCCCGGGGCGCCCAAGCTGCAACGCAGGGTTGCGAGGTCGTCGCCCGTCTGGGGCAAGAACCTTGCCAGCATCAGCGTCAACCTGTTCNAGGCGTTCGAATCGGAGGTTGTAGAGATGTAAATATTATTACAGGACACGCGCTTCAGTTTCAGCAATTCAGCTTATACTTTGCTCGTGTATATTTTCATCCTTTTAGTGTTCTTAGTGTTAGGTTATAAAATGTTAGGAGTGCATTTTGTAGCTCACGTCAAACAGAGGAGAAAAAAAACTTAGGTAGTGATACTGTTATTAATCTCATACTAGTAGCATGTGTTAGGAGTAGCTATAAATGGTCGTTCTTCAATGCTGTGATTGAAGAGAACACGACG CCTTGTGTAATAAGTTTCATATAAGCATCGAATGCATGAATTATCAGGAGATCTCTCTTCaaaaa ] [-] EMBL CF311838 [ TCAAGATGTCTTGATTAAGGTCTTGTGCAAGGTGAACCACAGTGACCCTGAGGCCGCTGCTCCTAGTGTCAAAACAAGTTAGCGAAGCAACGGTGGTTGCGAGAGAGCAGCATTTCGCGTTTGCGACGCCATCCCTNGAAGGCCGCCTTGAGAGGCGGCGAGGAGGAAGAAGAAGCTCCCGGGGCGCCCAAGCTGCAACGCAGGGTTGCGAGGTCGTCGCCCGTCTGGGGCAAGAACCTTGCCAGCATCAGCGTCAACCTGTTCGAGGCGTTCGAATCGGAGGTTGTAGAGATGTAAATATTATTACAGGACACGCGCTTCAGTTTCAGCAATTCAGCTTATACTTTGCTCGTGTATATTTTCATCCTTTTAGTGTTCTTAGTGTTAGGTTATAAAATGTTAGGAGTGCATTTTGTAGCTCACGTCAAACAGAGGAGAAAAAAAACTTAGGTAGTGATACTGTTATTAATCTCATACTAGTAGCATGTGTTAGGAGTAGCTATAAATGGTCGTTCTTCAATGCTGTGATTGAAGAGAACACGACGCCCTTGTGTAATAAGTTTCATATAAGCATCGAATGCATGAATTATCAGGAGATCTCTCTTCTTTTTTATGTGTAAAAAAAA ] [+] EMBL AU166970 [ CGCAGGGTTGCGAGGTCGTCGCCCGTCTGGGGCAAGAACCTTGCCAGCATCAGCGTCAACCTGTTCGAGGCGTTCGAATCGGAGGTTGTAGAGATGTAAATATTATTACAGGACACGCGCTTCAGTTTCAGCAATTCAGCTTATACTTTGCTCGTGTATATTTTCATCCTTTTAGTGTTCTTAGTGTTAGGTTATAAAATGTTAGGAGTGCATTTTGTAGCTCACGTCAAACAGAGGAGAAAAAAAACTTAGGTAGTGATACTGTTATTAATCTCATACTAGTAGCATGTGTTAGGAGTAGCTATAAATGGTCGTTCTTCAATGCTGTGATTGAAGAGAACACGACG CCTTGTGTAATAAGTTTCATATAAGCATCGAATGCATGAATTATCAGGAGATCTCTCTTCTTTTTTATGTGTAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||