These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1229 fasta sequence [CACCACGCCGCCTCGCCTCGACCCGATCTCCTCTCCACCCACCCGATCCACCCGCCGGAGAGGAAGGCCGCCGCCGCCGCCATGCTCAGGGTCGCCGGGAGGCGCCTCACCACCGCCCTCGCCTGGCGCCCCGCCGCGGCGGCCGGCGCCAGGGGCCCGCTCGCCGGGGGCTCCCTCCCCGGCGACGACGAATTCTCGCGTGAGCCCCAGAGGCCGCGCTTCGCCGTGGATTCCCCGTTCTTCGCCGCTTCGAGGGGCTTTTCCTCAGAAACTCTTGTTCCAAGGAACCAGGATGTAAGCTTGACTGAGCTTCCAGCAACAGTGTCAGCTGTGAAGAATCCCAGTGCAAAGATTGTATATGATGAATATAACCATGAAAGATACCAGCCAGGTGACCCAAGTAAAAGAGCGTTTGCATACTTTGTGTTGAGTGGTGGAAGGTTTATTTATGCTTCGCTTCTGCGCTTGCTCGTTTTGAAGTTTGTTCTAAGCATGTCTGCTAGCAAGGATGTTCTTGCTCTTGCTTCCCTTGAGGTGGATCTCTCTAGTATTGAGCCTGGCACCACTGTGACCGTGAAGTGGCGGGGCAAGCCAGTTTTTATCAGGCGCAGGA-CAGAGGAAGACATCAACTTGGC-GA-ACAGCGTTGACATTGGA-TCTCTTCGTGACCCACAGCAGGATGCGGAACGAGTCA-AGAACCCTGAGTGGCTGGTTGTGATTGGGGTGTGTACTCATCTGGGCTGCATTCCACTT-CCCAACGCT-GGTGACTTTGGTGGCT-GGTTCT-GTCCAT-GCCATGGAT-CACAT-T-AT-GATATAT-CA-GGTAGAATCCGTAA-GGGCCCTGCACCATACAACCT-CGAAGTCCCGACCTACT-CATTTCTGGAAGAGA-A-CAAATT-GCT-CAT-CGGCT-GAGATT-ACATTGACCA-CA-GGGTTTAAAAT-CTTAT-GGCACTTCTATT-CTCTGTT-GGTTTG-ACGT-TT-CACC-TTTTTGTTGCT-CTACTTT-G-TTGG-ACACCTT--CTA-GTAAAGAATAATG-AGCTGCTACTTGGCTACTGTTAATT-AAT-TTCCAAGTTTGGTTCT-GTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACA-AGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCCTTCTCTTC-ATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAACTTTTTGCC-ATACTATTTGTGACATCAAAAAGA] [+] EMBL AK102815 [CACCACGCCGCCTCGCCTCGACCCGATCTCCTCTCCACCCACCCGATCCACCCGCCGGAGAGGAAGGCCGCCGCCGCCGCCATGCTCAGGGTCGCCGGGAGGCGCCTCACCACCGCCCTCGCCTGGCGCCCCGCCGCGGCGGCCGGCGCCAGGGGCCCGCTCGCCGGGGGCTCCCTCCCCGGCGACGACGAATTCTCGCGTGAGCCCCAGAGGCCGCGCTTCGCCGTGGATTCCCCGTTCTTCGCCGCTTCGAGGGGCTTTTCCTCAGAAACTCTTGTTCCAAGGAACCAGGATGTAAGCTTGACTGAGCTTCCAGCAACAGTGTCAGCTGTGAAGAATCCCAGTGCAAAGATTGTATATGATGAATATAACCATGAAAGATACCAGCCAGGTGACCCAAGTAAAAGAGCGTTTGCATACTTTGTGTTGAGTGGTGGAAGGTTTATTTATGCTTCGCTTCTGCGCTTGCTCGTTTTGAAGTTTGTTCTAAGCATGTCTGCTAGCAAGGATGTTCTTGCTCTTGCTTCCCTTGAGGTGGATCTCTCTAGTATTGAGCCTGGCACCACTGTGACCGTGAAGTGGCGGGGCAAGCCAGTTTTTATCAGGCGCAGGA CAGAGGAAGACATCAACTTGGC GA ACAGCGTTGACATTGGA TCTCTTCGTGACCCACAGCAGGATGCGGAACGAGTCA AGAACCCTGAGTGGCTGGTTGTGATTGGGGTGTGTACTCATCTGGGCTGCATTCCACTT CCCAACGCT GGTGACTTTGGTGGCT GGTTCT GTCCAT GCCATGGAT CACAT T AT GATATAT CA GGTAGAATCCGTAA GGGCCCTGCACCATACAACCT CGAAGTCCCGACCTACT CATTTCTGGAAGAGA A CAAATT GCT CAT CGGCT GAGATT ACATTGACCA CA GGGTTTAAAAT CTTAT GGCACTTCTATT CTCTGTT GGTTTG ACGT TT CACC TTTTTGTTGCT CTACTTT G TTGG ACACCTT CTA GTAAAGAATAATG AGCTGCTACTTGGCTACTGTTAATT AAT TTCCAAGTTTGGTTCT GTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACA AGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATC ] [+] EMBL AU068962 [ ncnCCGGTGNGGAAGGCCGCCGNCGCCGCCATGCTCANGGTCGNCGGGANGNCACTCACCACCGCCCTCGCCTGGCGCCCCGCCGCGGC GCCGGCGCCAGGGGCCCGCTCGCCGGGGGCTCCCTCCCCGGCGACGACGAATTCTCGCGTGAGCCCCAGAGGCCGCGCTTCGCCGTGGATTCCCCGTTCTTCGCCGCTTCGAGGGGCTTTTCCTCAGAAACTCTTGTTCCAAGGAACCAGGATGTAAGCTTGACTGAGCTTCCAGCAACAGTGTCAGCTGTGAAGAATCCCAGTGCAAAGATTGTATATGATGAATATAACCATGAAAGATACCAGCCAGGTGACCCAAGTAAAAGAGCGTTTGCATACTTTGTGTTGAGTGGTGGAA GTTTATTTATGCTT ] [+] EMBL AA751931 [ cgaGCAAAGATTGTATATGATGAATATAACCATGAAAGATACCAGCCAGGTGACCCAAGTAAAAGAGCGTTTGCATACTTTGTGTTGAGTGGTGGAAGGTTTATTTATGCTTCGCTTCTGCGCTTGCTCGTTTTGAAGTTTGTTCTAAGCATGTCTGCTAGCAAGGATGTTCTTGCTCTTGCTTCCCTTGAGGTGGATCTCTCTAGTATTGAGCCTGGCACCACTGTGACCGTGAAGTGGCGGGGCAAGCCAGTTTTTATCAGGCGCAGGA CAGANGAAGACATCAACTTGGC GA ACAGCGTTGACATTGGA TCTCTTCGTGACCCACAGCAGGATGCGGAACGAGTCA AGAACCCTGANTGGCTGGTTGTGATTGGGGTGTGTACTCATCTGGGCTGCATTCCACTT CCCAACGCT GGTGACTTTGGTGGCT GGTTCT GTCCAT GCCATGGAT CACAT T AT GATATAT CA GGTAGAATCCGTAAGGGGCCCTGCACCATACAACCTCCAAAGTCCCGACCTACT CATTTCTGGAANAAA A CAAATT GCT CNT CCGCT GAAATT AC TTGAACA CA GGGTTTAAAAT CTTATGGGCACTTCTATTCCCCTGTTGGGTTTGAACGT TTCCNCCTTTTTTGTTGCTCCCACTTT GTTTGGAACACCTTCCCAATTTAAAAAATAATGAAACTGC ACTTGGCTACTGTatat ] [+] EMBL BI805630 [ tgcGGGCAAGCCAGTTTTTATCAGGCGCAGGACCAGAGGAAGACATCAACTTGGC GATACAGCGTTGACATTGGA TCTCTTCGTGACCCACAGCAGGATGCGGAACGAGTCANAGAACCCTGAGTGGCTGGTTGTGATTGGGGTGTGTACTCATCTGGGCTGCATTCCACTTGCCCAACGCTGGGTGACTTTGGTGGCTGGGTTCTGGTCCATGGCCATGGATGCACATNTGATGGATATATGCA GGTAGAATCCGTAA GGGCCCTGCACCATACAACCT CGAAGTCCCGACCTACTGCATTTCTGGAAGAGATACCAAATTGGCTGCATGCGGCTGGAGATTGACATTGACCACCANGGGTTTAAAATGCTTATGGGCACTTCTATTGCTCTGTT GGTTTG ACGTNTT CACC TTTTTGTTGCT CTACTTTGG TTGG ACACCTT CTA GTAAAGAATAATG AGCTGCTACTTGGCTACTGTTAATTGAATNTTCCCAGTTTGGTTCT GTTACCTGAAATC ATAGGAGTTATCTTGTAATTGTCTTACATAGCTGGCACAGTGAAGCTTATATGTTGT ] [+] EMBL BI806697 [ aaCCA TTTTTATCA GCCCAGGA CAGAGGAAGACATCAACTTGGCGGA ACAGC TTGACATTGGATTCTCTTCGTGACCCACA CAGGAT CGGAACGAGTCA AGAA CCTGAGT GCTGTTTGTGATTGGGGTGTGTACTCATCT GGCTGCATTCCACTT CCCAACGCT GGTGACTTTGGT GCT GGTTCT GTCCAT GCCATGGAT CACAT T AT GATATAT CATGGTAGAATCCGTAA GGGCCCTGCACCATACAACCT CGAAGTCCCGACCTACT CATTTCTGGAAGAGA A C AATT GCT CAT CGGCT GAGATT ACATTGACCA CA GGGTTTAAAAT CTTAT GGCACTTCTATT CTCTGTT GGTTTG ACGT TT CACC TTTTTGTTGCT CTACTTT G TTGG ACACCTT CTA GTAAAGAATAATG AGCTGCTACTTGGCTACTGTTAATT AAT TTCCAAGTTTGGTTCTCGTTACCTGAAATC ATAGGAGTTATCTTGTAATTGTCTTACA AGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCCTTCTCTTC ATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAACTTTTTGCC ATACTATTTGTGACATCAAAAA ] [+] EMBL AU165272 [ TCTGTT GGTTTG ACGT TT CACC TTTTTGTTGCT CTACTTT G TTGG ACACCTT CTA GTAAAGAATAATG AGCTGCTACTTGGCTACTGTTAATT AAT TTCCAAGTTTGGTTCT GTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACA AGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCCTTCTCTTCAATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAACTTTTTGCCAATACTATTTGTGACATCAtgatga] consensusID : consensus_11802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 392 fasta sequence [CCATACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGAACAAATTGCTCATCGGCTGAGATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACGTTTCACCTTTTTGTTGCTCTACTTTGTTGGGCACCTT-CTAGTAAAGAATAATGAGCTGCTACTTGGCTACTGTTAATTAATTTCCAAGTTTGGTTCTGTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACAAGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCCTTCTCTTCAATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAGCTTTTTTAAGCTTTTTTTTTTTGGGGGCATGG] [+] EMBL AU165012 [CCATACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGAACAAATTGCTCATCGGCTGAGATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACGTTTCACCTTTTTGTTGCTCTACTTTGTTGGGCACCTT CTAGTAAAGAATAATGAGCTGCTACTTGGCTACTGTTAATTAATTTCCAAGTTTGGTTCTGTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACAAGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCCTTCTCTTCAATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAGCTT ] [-] EMBL AU165006 [ CATACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGAACAAATTGCTCATCGGCTGAGATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACGTTTCACCTTTTTGTTGCTCTACTTTGTTGGGCACCTT CTAGTAAAGAATAATGAGCTGCTACTTGGCTACTGTTAATTAATTTCCAAGTTTGGTTCTGTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACAAGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCCTTCTCTTCAATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAGCTTTTTTAAGCTTTTTTTTTTTGGGGGCATGG] [-] EMBL AU165074 [ CATACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGAACAAATTGCTCATCGGCTGAGATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACGTTTCACCTTTTTGTTGCTCTACTTTGTTGGGCACCTTCCTAGTAAAGAATAATGAGCTGCTACTTGGCTACTGTTAATTAAaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11802#0 CACCACGCCGCCTCGCCTCGACCCGATCTCCTCTCCACCCACCCGATCCACCCGCCGGAG 60 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 AGGAAGGCCGCCGCCGCCGCCATGCTCAGGGTCGCCGGGAGGCGCCTCACCACCGCCCTC 120 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 GCCTGGCGCCCCGCCGCGGCGGCCGGCGCCAGGGGCCCGCTCGCCGGGGGCTCCCTCCCC 180 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 GGCGACGACGAATTCTCGCGTGAGCCCCAGAGGCCGCGCTTCGCCGTGGATTCCCCGTTC 240 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 TTCGCCGCTTCGAGGGGCTTTTCCTCAGAAACTCTTGTTCCAAGGAACCAGGATGTAAGC 300 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 TTGACTGAGCTTCCAGCAACAGTGTCAGCTGTGAAGAATCCCAGTGCAAAGATTGTATAT 360 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 GATGAATATAACCATGAAAGATACCAGCCAGGTGACCCAAGTAAAAGAGCGTTTGCATAC 420 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 TTTGTGTTGAGTGGTGGAAGGTTTATTTATGCTTCGCTTCTGCGCTTGCTCGTTTTGAAG 480 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 TTTGTTCTAAGCATGTCTGCTAGCAAGGATGTTCTTGCTCTTGCTTCCCTTGAGGTGGAT 540 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 CTCTCTAGTATTGAGCCTGGCACCACTGTGACCGTGAAGTGGCGGGGCAAGCCAGTTTTT 600 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 ATCAGGCGCAGGACAGAGGAAGACATCAACTTGGCGAACAGCGTTGACATTGGATCTCTT 660 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 CGTGACCCACAGCAGGATGCGGAACGAGTCAAGAACCCTGAGTGGCTGGTTGTGATTGGG 720 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 GTGTGTACTCATCTGGGCTGCATTCCACTTCCCAACGCTGGTGACTTTGGTGGCTGGTTC 780 consensus_11802#1 ------------------------------------------------------------ consensus_11802#0 TGTCCATGCCATGGATCACATTATGATATATCAGGTAGAATCCGTAAGGGCCCTGCACCA 840 consensus_11802#1 ---------------------------------------------------------CCA 3 *** consensus_11802#0 TACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGAACAAATTGCTCATCGGCTGA 900 consensus_11802#1 TACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGAACAAATTGCTCATCGGCTGA 63 ************************************************************ consensus_11802#0 GATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACG 960 consensus_11802#1 GATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACG 123 ************************************************************ consensus_11802#0 TTTCACCTTTTTGTTGCTCTACTTTGTTGGACACCTTCTAGTAAAGAATAATGAGCTGCT 1020 consensus_11802#1 TTTCACCTTTTTGTTGCTCTACTTTGTTGGGCACCTTCTAGTAAAGAATAATGAGCTGCT 183 ****************************** ***************************** consensus_11802#0 ACTTGGCTACTGTTAATTAATTTCCAAGTTTGGTTCTGTTACCTGAAATCAATAGGAGTT 1080 consensus_11802#1 ACTTGGCTACTGTTAATTAATTTCCAAGTTTGGTTCTGTTACCTGAAATCAATAGGAGTT 243 ************************************************************ consensus_11802#0 ATCTTGTAATTGTCTTACAAGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCC 1140 consensus_11802#1 ATCTTGTAATTGTCTTACAAGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCC 303 ************************************************************ consensus_11802#0 TTCTCTTCA-TCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAACTT 1199 consensus_11802#1 TTCTCTTCAATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAGCTT 363 ********* ********************************************** *** consensus_11802#0 TTT--GCCATACTATTTGTGACATCAAAAAGA 1229 consensus_11802#1 TTTTAAGCTTTTTTTTTTTGGGGGCATGG--- 392 *** * * * *** ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||