|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11814#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1028 fasta sequence
[TTTTTTTTGCACTGTAATTCACTCTATTATTATTTACCTTTATGCAAAATCTTGTACTAAATCTACAACTTAGAAAACACTTTT--TTTTCAAAAGCCACTGAAAGACTTAGGCCTCCTTTGGAACACACAAAATTCCCATGTTTTTTTTTACAAGAACTTACACCATTTTCTGTGAAATTCATATGAAAT-CCCCATGTTTACATGAAAAGGAGGCCTTAGAACGTAGCCGTAAATGCGTGCTTGTTCAAGTACTCCATGGCGACGGCCGCGTGCAAGGCGGCTCCTACCGGAAGCACATCCTCGTCGACGACGAAGTGTGGGGAGTGCAGC-GGGTACACCTTCCGCATGGTCGTCTCGTTGCCGACGCCGATCATGAAGAACGCCGCCGGGAACCTCTGCGCGTAGAAGGCGAAGTCCTCGCTGCCCATGAACGGGGTGCCCACCTTGACGCCGTCTTCCCCGAGCACGTCCACGGCCACGGCCCTGGCGTGGCGGTACATCCCTTCGTCGTTCACGGTGGCCGGGTACGGGATGCGTTCCTCCTCCATGAAGTCGACGGTGGCGGTGCACCGGTGCACGGTCGCGTGCGCTTCGACGATCTCTTTGATCCTCTTCTTGAGATATGAGAGGCCTTCTGATGTCAAGCTCC-TGAAGGTGCCA-CCGAAAGATACCGACTCT-GGGATGACATTGTAGGCATCGCCTCCTTTCATGAATGTCACGGAGATCACCGCAGCCTCAAGAGGATCAGTTTCCCGGGCTACGATCTGCTGGAGGCTGACGATGGCAGAGGATGCAGTGAGGATGGGGTCAACGGCGTTGTGTGGGCCTGCAGCATGACCACCCTTCCCAGTGATCGTTGCAAGAAACCGGCCTGATGCTGCAAGAAATGGCCCTGGCCTGGAGGTGACGGTGCCTACTTGAATTCTTGGATCAACGTGCAAGCCAAAAATGGCTGACACATCATCTAGCACGCCTTCTTGTAGAACATAGCGTGCGCCAGCATAACCTTCCTCTGCTGGCTGGAAGAC]
[-] EMBL AU057170 [TTTTTTTTGCACTGTAATTCACTCTATTATTATTTACCTTTATGCAAAATCTTGTACTAAATCTACAACTTAGAAAACACGAGT ATTTCAAAAGCCACTGAAAGACTTAGGCCTCCTTTGGAACACACAAAATTCCCATGTTTTTTTTTACAAGAACTTACACCATTTTCTGTGAAATTCATATGAAAT CCCCATGTTTACATGAAAAGGAGGCCTTAGAACGTAGCCGTAAATGCGTGCTTGTTCAAGTACTCCATGGCGACGGCCGCGTGCAAGGCGGCTCCTACCGGAAGCACATCCTCGTCGACGACGAAGTGTGGGGAGTGCAGC GGGTACACCTTCCGCATGGTCGTCTCGTTGCCGACGCCGATCATGAAGAACGCCGCCGGGAACCTCTGCGCGTAGAAGGCGAAGTCCTCGCTGCCCATGAACGGGGTGCCCACCTTGA ]
[+] EMBL CB617808 [ tCTTTTAAGTTTC AAAGCCACTGAAAACCTTAGGCCTCCTCTGTAACACACAAAATTCCCATGTTTTTTTTTACAAGAACTTACACCATTTTCTGTGAAATTCATATGAAAT CCCCATGTTTACATGAAAAGGAGGCCTTAAAACGTAGCCGTAAATGCGTGCTTGTTCAAGTACTCCATGGCGACGGCCGCGTGCAAGGCGGCTCCTACCGGAAGCACATCCTCGTCGACGACGAAGTGTGGGGAGTGCAGC GGGTACACCTTCCGCATGGTCGTCTCGTTGCCGACGCCGATCATGAAAAACGCCGCCGGGAACCTCTGCGCGTAAAAGGCGAAGTCCTCGCCGCCCATGAACGGGGTGCCCACCTTGACGCCGTCTTCCCCGAGCACGTCCACGGCCACGGCCCTGGCGTGGCGGTACATCCCTTCGTCGTTCACGGTGGCCGGGTACGGGATGCGTTCCTCCTCCATGAAGTCGACGGTGGCGGTGCACCGGTGCACGGTCGCGTGCGCTTCGACGATCTCTTTGATCCTCTTCTTGAGATATGAGAGGCCTTCTGATGTCAAGCTCC TGAAGGTGCCA CCGAAAGATACCGACTCT GGGATGACATTGTAGGCATCGCCTCCTTTCATGAATGTCACGGAGATCACCGCAGCCTCAAGAGGATCAGTTTCCCGGGCTACGATCTGCTGGAGGCTGACGATGGCAAAGGATGCAGTGAGGATGGGGTCAACGGCGTTGTGTGGGCCTGCAGCATGACCACCCTTCCCAGTGATCGTTGCAAGAAACCGGCCTGATGCTGCAAGAAATGGCCCTGGCCTGGAGGTGACGGTGCCTACTTG ]
[-] EMBL AU031631 [ TTTT TTTTCAAAAGCCACTGAAAGACTTAGGCCTCCTTTGGAACACACAAAATTCCCATGTTTTTTTTTACAAGAACTTACACCATTTTCTGTGAAATTCATATGAAAT CCCCATGTTTACATGAAAAGGAGGCCTTAGAACGTAGCCGTAAATGCGTGCTTGTTCAAGTACTCCATGGCGACGGCCGCGTGCAAGGCGGNTCCTACCGGAAGCACATCCTCGTCGACGACGAAGTGTGGGGAGTGCAGCGGGGTACACCTTCCGCATGGTCGTCTCGTTGCCGACGCCGATCATGAAGAACGCCGCCGGGAACCTCTGCGCGTAGAAGGCGAAGTCCTCGCTGCCCATGAAng ]
[-] EMBL AU164584 [ TTTT TTTTCAAAAGCCACTGAAAGACTTAGGCCTCCTTTGGAACACACAAAATTCCCATGTTTTTTTTTACAAGAACTTACACCATTTTCTGTGAAATTCATATGAAAT CCCCATGTTTACATGAAAAGGAGGCCTTAGAACGTAGCCGTAAATGCGTGCTTGTTCAAGTACTCCATGGCGACGGCCGCGTGCAAGGCGGNTCCTACCGGAAGCACATCCTCGTCGACGACGAAGTGTGGGGAGTGCAGC GGGTACACCTTCCGCATGGTCGTCTCGTTGCCGACGCCGATCATGAAGAACGCCGCCGGGAACCTNTGCGCGTAGAAGGCGAAGTCCTCGNTGCCCATGAACGGGGTGCCCACCTTGACGCCGTCTTCCCCGAGCACGTCCACGGCCACGGCCCTGGCGTGGCGGTACATCCCTTCGTCGTTCACGGTGGCCGGGTACGGGATGCGTTCCTCCTCCATGAAGTCGACGGTGGCGGTGCACCGGTGCACGGTCGCGTGCGCTTCGACGATCTCTTTGATCCTCTTCTTGAGATATGAGAGGCCTTCTGATGTCAAGCTCCTTGAAGGTGCCACCCGAAAGATACCGACTNTGGGGATGACATTGTAGGCATCGCCTCCTTTTATGAATGTCACGGA ]
[-] EMBL AU057169 [ CCCATGTTTTTTTTTACAAGAACTTACACCATTTTCTGTGAAATTCATATGAAATCCCCCATGTTTACATGAAAAGGAGGCCTTAGAACGTAGCCGTAAATGCGTGCTTGTTCAAGTACTCCATGGCGACGGCCGCGTGCAAGGCGGCTCCTACCGGAAGCACATCCTCGTCGACGACGAAGTGTGGGGAGTGCAGC GGGTACACCTTCCGCATGGTCGTCTCGTTGCCGACGCCGATCATGAAGAACGCCGCCGGGAACCTCTGCGCGTAGAAGGCGAAGTCCTCGCTGCCCATGAACGGGGTGCCCACCTTGACGCCGTCTTCCCCGAGCACGTCCACGGCCACGGCCCTGGCGTGGCGGTACATCCCTTCGTCGTTCACGGTGGCCGGGTACGGGATGCGTTCCTCCTCCATGAAGTCGACGGTGGCGGTGCACCGGTGCACGGTCGCGTGCGCT ]
[-] EMBL CB617807 [ AAT CCCCATGTTTACATGAAAAGGAGCCTTTAGAACGTAGCCGTAGATGCGTGCTTGTTCAAGTACTCCATGGCGACGGCCGCGTGCAAGGCGGCTCCTACCGGAAGCACATCCTCGTCGACGACGAAGTGTGGGGAGTGCAGC GGGTACACCTTCCGCATGGTCGTCTCGTTGCCGACGCCGATCATGAAGAACGCCGCCGGGAACCTCTGCGCGTAGAAGGCGAAGTCCTCGCCGCCCATGAACGGGGTGCCCACCTTGACGCCGTCTTCCCCGAGCACGTCCACGGCCACGGCCCTGGCGTGGCGGTACATCCCTTCGTCGTTCACGGTGGCCGGGTACGGGATGCGTTCCTCCTCCATGAAGTCGACGGTGGCGGTGCACCGGTGCACGGTCGCGTGCGCTTCGACGATCTCTTTGATCCTCTTCTTGAGATATGAGAGGCCTTCTGATGTCAAGCTCC TGAAGGTGCCA CCGAAAGATACCGACTCT GGGATGACATTGTAGGCATCGCCTCCTTTCATGAATGTCACGGAGATCACCGCAGCCTCAAGAGGATCAGTTTCCCGGGCTACGATCTGCTGGAGGCTGACGATGGCAGAGGATGCAGTGAGGATGGGGTCAACGGCGTTGTGTGGGCCTGCAGCATGACCACCCTTCCCAGTGATCGTTGCAAGAAACCGGCCTGATGCTGCAAGAAATGGCCCTGGCCTGGAGGTGACGGTGCCTACTTGAATTCTTGGATCAACGTGCAAGCCAAAAATGGCTGACACATCATCTAGCACGCCTTCTTGTAGAACATAGCGTGCGCCAGCATAACCTTCCTCTGCTGGCTGGAAGAC]
[-] EMBL OSR00461A [ nCCACGGCCCTGGCGTGNCGGTACATCCCTTCGTCGTTCACGGTGGCCGGGTACGGNATGCGTTCCTCCTCCATGAAGTCGACGGTGGCGGTGCACCGGTGCACGGTCGCGTGCGCTTCGACGATCTCTTTGATCCTCTTCTTGAGATATGAGAGGCCTTCTGATGTCAAGCTCC TGAAGGTGCCA CCGAAAGATACCGACTCT GGGATGACATTGTAGGCATCGCCTCCTTTCATGAATGTCACGGAGATCACCGCAGCCTCAAGAGGATCAGTTTCCCGGGCTACGATCTGCTGGAGGCTGACGATGGCAGAGGATGCAGTGAGGATGGGGTCGACAAAGTTGTGTGGGCCTGCAGCATGACCACCCTTCCCAGTGAT ]
[-] EMBL OSR06011A [ CCCTGCCGTGGCGGTACATCCCTTCGTCGTTCACGGTGGCCGGGTACGGGATGCGTTCCTCCTCCATGAAGTCGACGGTGNCGGTGCACCGGTGAACGGTCGCGTGCGCTTCGACGATCTCTTTGATCCTCTTCTTGAGATATGAGAGGCCTTCTGATGTCAAGCTCC TGAAGGTGCCA CCGAAAGATACCGACTCT GGGATGACATTGTAGGCATCGCCTCCTTTCATGAATGTCACGGAGATCACCGCAGCCTCAAGAGGATCAGTTTCCCGGGCTACGATCTGCTGGAGGCTGACGATGGCAGAGGATGCAGTGAGGATGGGGTCGACGGCGTTGTGTGGGCCTGCAGCATGACCACCCTTCCCAGTGAT ]
consensusID : consensus_11814#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence
[TTTTGCACTGTANTTCACTCTATTATTATTTACCTTTATGCAAANTCTTGTACTAAATCTACAACTTAGAAAACACGAGTATTTCAAAAGCCACTGAAAGACTTAGGCCTCCTTTGGAACACACAAANTTCCCATGTTTTTTTTTACAAGAACTTACACCATTTTCTGTGAANTTCATATGAAATCCCCATGTTTACATGAAAAGGAGGCCTTAGAACGTAGCCGTAAATGCGTGCTTGTTCAGGTACTCCATGGCGNCGGCAGCGTGCAAGGCGGNTCCTACCGGAGGCACATCCTCGTCGACGACGNANGTGTGGGGGAGGTGCAGCGGGGTACACCTTCCGCATGGTCGTCTCGTTGCCGCGGCGTTCATGAGGACGNCGCCGGGGACCTTTGCGGTAGGAGGGGAGTCCTCGTT]
[-] EMBL C99327 [TTTTGCACTGTANTTCACTCTATTATTATTTACCTTTATGCAAANTCTTGTACTAAATCTACAACTTAGAAAACACGAGTATTTCAAAAGCCACTGAAAGACTTAGGCCTCCTTTGGAACACACAAANTTCCCATGTTTTTTTTTACAAGAACTTACACCATTTTCTGTGAANTTCATATGAAATCCCCATGTTTACATGAAAAGGAGGCCTTAGAACGTAGCCGTAAATGCGTGCTTGTTCAGGTACTCCATGGCGNCGGCAGCGTGCAAGGCGGNTCCTACCGGAGGCACATCCTCGTCGACGACGNANGTGTGGGGGAGGTGCAGCGGGGTACACCTTCCGCATGGTCGTCTCGTTGCCGCGGCGTTCATGAGGACGNCGCCGGGGACCTTTGCGGTAGGAGGGGAGTCCTCGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11814#0 TTTTTTTTGCACTGTAATTCACTCTATTATTATTTACCTTTATGCAAAATCTTGTACTAA 60
consensus_11814#1 ----TTTTGCACTGTANTTCACTCTATTATTATTTACCTTTATGCAAANTCTTGTACTAA 56
************ ******************************* ***********
consensus_11814#0 ATCTACAACTTAGAAAACACTTTTTTTTCAAAAGCCACTGAAAGACTTAGGCCTCCTTTG 120
consensus_11814#1 ATCTACAACTTAGAAAACACGAGTATTTCAAAAGCCACTGAAAGACTTAGGCCTCCTTTG 116
******************** * ***********************************
consensus_11814#0 GAACACACAAAATTCCCATGTTTTTTTTTACAAGAACTTACACCATTTTCTGTGAAATTC 180
consensus_11814#1 GAACACACAAANTTCCCATGTTTTTTTTTACAAGAACTTACACCATTTTCTGTGAANTTC 176
*********** ******************************************** ***
consensus_11814#0 ATATGAAATCCCCATGTTTACATGAAAAGGAGGCCTTAGAACGTAGCCGTAAATGCGTGC 240
consensus_11814#1 ATATGAAATCCCCATGTTTACATGAAAAGGAGGCCTTAGAACGTAGCCGTAAATGCGTGC 236
************************************************************
consensus_11814#0 TTGTTCAAGTACTCCATGGCGACGGCCGCGTGCAAGGCGGCTCCTACCGGAAGCACATCC 300
consensus_11814#1 TTGTTCAGGTACTCCATGGCGNCGGCAGCGTGCAAGGCGGNTCCTACCGGAGGCACATCC 296
******* ************* **** ************* ********** ********
consensus_11814#0 TCGTCGACGACGAAG---TGTGGGGAGTGCAGCGGG-TACACCTTCCGCATGGTCGTCTC 356
consensus_11814#1 TCGTCGACGACGNANGTGTGGGGGAGGTGCAGCGGGGTACACCTTCCGCATGGTCGTCTC 356
************ * ** *** ********** ***********************
consensus_11814#0 GTTGCCGACGCCGATCATGAAGAACGCCGCCGGGAACCTCTGCGCGTAGAAGGCGAAGTC 416
consensus_11814#1 GTTGCCG-CGGCGTTCATGA-GGACGNCGCCGGGGACCTTTGCG-GTAGGAGG-GGAGTC 412
******* ** ** ****** * *** ******* **** **** **** *** * ****
consensus_11814#0 CTCGCTGCCCATGAACGGGGTGCCCACCTTGACGCCGTCTTCCCCGAGCACGTCCACGGC 476
consensus_11814#1 CTCGTT------------------------------------------------------ 418
**** *
consensus_11814#0 CACGGCCCTGGCGTGGCGGTACATCCCTTCGTCGTTCACGGTGGCCGGGTACGGGATGCG 536
consensus_11814#1 ------------------------------------------------------------
consensus_11814#0 TTCCTCCTCCATGAAGTCGACGGTGGCGGTGCACCGGTGCACGGTCGCGTGCGCTTCGAC 596
consensus_11814#1 ------------------------------------------------------------
consensus_11814#0 GATCTCTTTGATCCTCTTCTTGAGATATGAGAGGCCTTCTGATGTCAAGCTCCTGAAGGT 656
consensus_11814#1 ------------------------------------------------------------
consensus_11814#0 GCCACCGAAAGATACCGACTCTGGGATGACATTGTAGGCATCGCCTCCTTTCATGAATGT 716
consensus_11814#1 ------------------------------------------------------------
consensus_11814#0 CACGGAGATCACCGCAGCCTCAAGAGGATCAGTTTCCCGGGCTACGATCTGCTGGAGGCT 776
consensus_11814#1 ------------------------------------------------------------
consensus_11814#0 GACGATGGCAGAGGATGCAGTGAGGATGGGGTCAACGGCGTTGTGTGGGCCTGCAGCATG 836
consensus_11814#1 ------------------------------------------------------------
consensus_11814#0 ACCACCCTTCCCAGTGATCGTTGCAAGAAACCGGCCTGATGCTGCAAGAAATGGCCCTGG 896
consensus_11814#1 ------------------------------------------------------------
consensus_11814#0 CCTGGAGGTGACGGTGCCTACTTGAATTCTTGGATCAACGTGCAAGCCAAAAATGGCTGA 956
consensus_11814#1 ------------------------------------------------------------
consensus_11814#0 CACATCATCTAGCACGCCTTCTTGTAGAACATAGCGTGCGCCAGCATAACCTTCCTCTGC 1016
consensus_11814#1 ------------------------------------------------------------
consensus_11814#0 TGGCTGGAAGAC 1028
consensus_11814#1 ------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||