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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1304 fasta sequence
[AAGCGCCGTTGAGCACTTCCGCTTCCGGCCACCGCGGGGTCGCCGGATATGGCCCAGGCACCAGCGCGCGCCGCTTCCGTCGTGCGGCTCTTCGACGCGCACTGCCACCTGCAGGACCCGCGTGTGCTGTCCGTCGCCCCTTCCCTCATACGCGCCGCCACCGCCGCCGGCGTCGCGCGCTTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT-TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT-GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGGAAGCTGTGTGATTGGGTGGGCATCCAATTTGAACCATGTTGTTCCTCTGAAATTATGAACCCTGGTGCGTGCATTCTGCCTCTGAACACTACCCGTTATATTGTACTCTCTCCTTTTTTTTTTGTTTGACGTTGGTTAGCTCAAAATTGAACTAACCAACATTAAACATTTGGGGAAGGCGGTAGTATATTAGTAATTGCAACATAAAAGAAAGTGGTTATTTCGTTAAGGAGGCACTATCTTGGCAATGTTGTCTAAGTGTGATTTTACATTTCTTGAGAGGAGAACAGCAGGTCAGCAAGGTATCTAAATAACTATTAAATGCACCACG]
[+] EMBL AK065648 [AAGCGCCGTTGAGCACTTCCGCTTCCGGCCACCGCGGGGTCGCCGGATATGGCCCAGGCACCAGCGCGCGCCGCTTCCGTCGTGCGGCTCTTCGACGCGCACTGCCACCTGCAGGACCCGCGTGTGCTGTCCGTCGCCCCTTCCCTCATACGCGCCGCCACCGCCGCCGGCGTCGCGCGCTTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGGAAGCTTTGTGATTGGGTGGGCATCCAATTTGAACCATGTTGTTCCTCTGAAATTATGAACCCTGGTGCGTGCATTCTGCCTCTGAACACTACCCGTTATATTGTACTCCCTCCTTTTTTTTTTGTTTGACGTTGGTTAGCTCAAAATTGAACTAACCAACATTAAACATTTGGGGAAGGCGGTAGTATATTAGTAATTGCAACATAAAAGGAAGTGGTTATTTCGTTAAGGAGGCACTATCTTGGCAATGTTGTCTAAGTGTGATTTTACATTTCTTGAGAGGAGAACAGCAGGTCAGCAAGGTATCTAAATAACTATTAAATGCACCACG]
[+] EMBL AK104763 [ TCCGGCCACCGCGGGGTCGCCGGATATGGCCCAGGCACCAGCGCGCGCCGCTTCCGTCGTGCGGCTCTTCGACGCGCACTGCCACCTGCAGGACCCGCGTGTGCTGTCCGTCGCCCCTTCCCTCATACGCGCCGCCACCGCCGCCGGCGTCGCGCGCTTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGGAAGCTGTGTGATTGGGTGGGCATCCAATTTGAACCATGTTGTTCCTCTGAAATTATGAACCCTGGTGCGTGCATTCTGCCTCTGAACACTACCCGTTATATTGTACTCTCTCCTTTTTTTTTTGTTTGACGTTGGTTAGCTCAAAATTGAACTAACCAACATTAAACATTTGGGGAAGGCGGTAGTATATTAGTAATTGCAACATAAAAGAAAGTGG ]
[+] EMBL AK061538 [ TCCGGCCACCGCGGGGTCGCCGGATATGGCCCAGGCACCAGCGCGCGCCGCTTCCGTCGTGCGGCTCTTCGACGCGCACTGCCACCTGCAGGACCCGCGTGTGCTGTCCGTCGCCCCTTCCCTCATACGCGCCGCCACCGCCGCCGGCGTCGCGCGCTTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGGAAGCTGTGTGATTGGGTGGGCATCCAATTTGAACCATGTTGTTCCTCTGAAATTATGAACCCTGGTGCGTGCATTCTGCCTCTGAACACTACCCGTTATATTGTACTCTCTCCTTTTTTTTTTGTTTGACGTTGGTTAGCTCAAAATTGAACTAACCAACATTAAACATTTGGGGAAGGCGGTAGTATATTAGTAATTGCAACATAAAAGAAAGTGG ]
[+] EMBL CF323330 [ CGCGCTTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGTNTACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAATGGGAGAAAGTAAAAAAGATTCTAATTCACGGGCAT ]
[+] EMBL CF323827 [ CGCGCTTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCAT ]
[+] EMBL BE230254 [ TCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGCGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGG ]
[+] EMBL BE230242 [ TCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGCGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGGAAGC ]
[+] EMBL BE229963 [ TCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGCGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGGTATGAAGTATGTCGCCTCACTGCT ]
consensusID : consensus_11816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence
[GCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTNGTCTNGACAAAGGTTCACATGGAAAAACCATTGACTTTGGNGAACAGGTTGAAGNTTTNCAGCAGCAACTTGAACTTTCTNAGGGGTTGNACAAAGNCCNTTTNN]
[+] EMBL D43498 [GCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTNGTCTNGACAAAGGTTCACATGGAAAAACCATTGACTTTGGNGAACAGGTTGAAGNTTTNCAGCAGCAACTTGAACTTTCTNAGGGGTTGNACAAAGNCCNTTTNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11816#0 AAGCGCCGTTGAGCACTTCCGCTTCCGGCCACCGCGGGGTCGCCGGATATGGCCCAGGCA 60
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 CCAGCGCGCGCCGCTTCCGTCGTGCGGCTCTTCGACGCGCACTGCCACCTGCAGGACCCG 120
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 CGTGTGCTGTCCGTCGCCCCTTCCCTCATACGCGCCGCCACCGCCGCCGGCGTCGCGCGC 180
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 TTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAG 240
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 TACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCG 300
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 GATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAG 360
consensus_11816#1 --------------------GCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAG 40
****************************************
consensus_11816#0 ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTT 420
consensus_11816#1 ATTNGTCTNGACAAAGGTTCACATGGAAAAACCATTGACTTTGGNGAACAGGTTGAAGNT 100
*** **** *********************************** ************* *
consensus_11816#0 TTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAA-GCCTGTTTCTGTTCATTGTGT 479
consensus_11816#1 TTNCAGCAGCAACTTGAACTTTCTNAGGGGTTGNACAAAGNCCNTTTNN----------- 149
** ****************** ** *** **** **** * * ***
consensus_11816#0 GCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGT 539
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 GTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTG 599
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 TTACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCT 659
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 AAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAA 719
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 ATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAATGGAGA 779
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 AAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCC 839
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 ATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGA 899
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 ACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGT 959
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 TCACAATGAAGTGGAAGCTGTGTGATTGGGTGGGCATCCAATTTGAACCATGTTGTTCCT 1019
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 CTGAAATTATGAACCCTGGTGCGTGCATTCTGCCTCTGAACACTACCCGTTATATTGTAC 1079
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 TCTCTCCTTTTTTTTTTGTTTGACGTTGGTTAGCTCAAAATTGAACTAACCAACATTAAA 1139
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 CATTTGGGGAAGGCGGTAGTATATTAGTAATTGCAACATAAAAGAAAGTGGTTATTTCGT 1199
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 TAAGGAGGCACTATCTTGGCAATGTTGTCTAAGTGTGATTTTACATTTCTTGAGAGGAGA 1259
consensus_11816#1 ------------------------------------------------------------
consensus_11816#0 ACAGCAGGTCAGCAAGGTATCTAAATAACTATTAAATGCACCACG 1304
consensus_11816#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||