These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1037 fasta sequence [AGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCCGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACCGCCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCCTCCTTCCTCCGGCCGACGCCGCCGCCGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGGGCCATGGCGCCACCCAAGCCCGGGGGCAAGCCCAAGAAAGTGGTGGGCCTCATAAAGCTGGCGCTGGAGGCCGGGAAGGCCACGCCGGCGCCGCCGGTCGGCCCCGCGCTTGGTGCCAAGGGTGTGAACATCATGTCCTTCTGCAAGGAGTACAATGCCAAGA-CGG-CCG-AGAAGGCCGGCTACATCATCCCT-GTC-GAGATCACCGTGTTCGATGATAAAAGTTTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTC-AAGGCAGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAACAGCAGATCAAGTACGTACAATAGCT-CAAGAGAAGTTG-CCAGATTTGAACTG-CAAGAGCATTGACTCGG-CCATGAGAATTATAGCGGGCA-CTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCA-CCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCC-GTGGTCAGTTTGAGAGCAAACAGACCATCTACTTTTCA-CAAGCTGTAATCATTTACATCCAAACTGTAGATGGTTTTCATGCTGCACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGTGCACATAGCTCAGCTTGTCAAACCTGAGTAAGATCTTACTGTTCCTGTTGCCCAAAAGCATGCCTGTTGTTTGTTTCAAAAAAAAAAAA] [+] EMBL AU222814 [AGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCCGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACCGCCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCCTCCTTCCTCCGGCCGACGCCGCCGCCGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGGGCCATGGCGCCACCCAAGCCCGGGGGCAAGCCCAAGAAAGTGGTGGGCCTCATAAAGCTGGCGCTGGAGGCCGGGAAGGCCACGCCGGCGCCGCCGGTCGGCCCCGCGCTTGGTGCCAAGGGTGTGAACATCATGTCCTTCTGCAAGGAGTACAATGCCAAGA CGG CCG AGAAGGCCGGCTACATCATCCCT GTC GAGATCACCGTGTTCGATGATAAAAGTTTCACCTTTATCTTGAAGACCC ] [+] EMBL AK065033 [ TTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCCGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACCGCCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCCTCCTTCCTCCGGCCGACGCCGCCGCCGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGGGCCATGGCGCCACCCAAGCCCGGGGGCAAGCCCAAGAAAGTGGTGGGCCTCATAAAGCTGGCGCTGGAGGCCGGGAAGGCCACGCCGGCGCCGCCGGTCGGCCCCGCGCTTGGTGCCAAGGGTGTGAACATCATGTCCTTCTGCAAGGAGTACAATGCCAAGA CGG CCG AGAAGGCCGGCTACATCATCCCT GTC GAGATCACCGTGTTCGATGATAAAAGTTTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTC AAGGCAGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAACAGCAGATCAAGTACGTACAATAGCT CAAGAGAAGTTG CCAGATTTGAACTG CAAGAGCATTGACTCGG CCATGAGAATTATAGCGGGCA CTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCA CCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCC GTGGTCAGTTTGAGAGCAAACAGACCATCTACTTTTCA CAAGCTGTAATCATTTACATCCAAACTGTAGATGGTTTTCATGCTGCACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGTGCACATAGCTCAGCTTGTCAAACCTGAGTAAGATCTTACTGTTC ] [+] EMBL AB042934 [ CCTCGTCTCGCCCCGCTCCAAGCGCGCCGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACCGCCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCCTCCTTCCTCCGGCCGACGCCGCCGCCGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGGGCCATGGCGCCACCCAAGCCCGGGGGCAAGCCCAAGAAAGTGGTGGGCCTCATAAAGCTGGCGCTGGAGGCCGGGAAGGCCACGCCGGCGCCGCCGGTCGGCCCCGCGCTTGGTGCCAAGGGTGTGAACATCATGTCCTTCTGCAAGGAGTACAATGCCAAGA CGG CCG AGAAGGCCGGCTACATCATCCCT GTC GAGATCACCGTGTTCGATGATAAAAGTTTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTC AAGGCAGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAACAGCAGATCAAGTACGTACAATAGCT CAAGAGAAGTTG CCAGATTTGAACTG CAAGAGCATTGACTCGG CCATGAGAATTATAGCGGGCA CTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCA CCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTG TCCTAGTGCTTGAATC TTTTCCCTCC G ] [+] EMBL AU088704 [ AAGACCGGCCCGAAGAAGCCCGGCTACATCANCCCTGGTCGGAGATCACCGTTTTCGATGATAAAAG TTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAAGGCAGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAACAGCAGATCAAGTACGTACAATAGCTCCAAGAGAAGTTG CCAGATTTGAACTG CAAGAGCATTGACTCGG CCATGAGAATTATAGCGGGCA CTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCA CCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCC GTGGTCAGTTTGAGAGCAAACAGACCATCTACTTTTCA CAAGCTGTAATCATTTACATCCAAACTGTAGATGGTTTTCATGCTGCACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGTGCACATAGCTCAGCTTGTCAAACCTGAGTAAGATCTTACTGTTCCTGTTGCCCAATTGCATGCCTGTTGTTTGTTTCAAAAAAAAAAAA] [+] EMBL BM419417 [ GCCTCAGTCCTTCTCCTC AAGGCAGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAACAGCAGATCAAGTACGTACAATAGCT CAAGAGAAGTTG CCAGATTTGAACTG CAAGAGCATTGACTCGG CCATGAGAATTATAGCGGGCA CTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCA CCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCC GTGGTCAGTTTGAGAGCAAACAGACCATCTACTTTTCA CAAGCTGTAATCATTTACATCC AACTGTAGATGGTTTTCATGCTGCACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGTGCACATAGCTCAGCTTGTCAAACCTGAGTAAGATCTTACTGTTCCTGTTGCCCAAAAaaa ] [+] EMBL AU222815 [ C AAGGCGGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGNAAAAGTAACAGCAGATCAAGTACGTACAATAGCT CAAGAGAAGTTG CCAGATTTGAACAG CAAGAGCATTGACTCGG CCATNAGAATTATAGCGGGCA CTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCA CCTTANTGATGGCCACCTGTAGATTTTACCTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCCAGTGGTCAGTTTGAGAGCAAACAGACCATCTACTTTTCA CAAGCTGTAATCATTTACATCCAAACTGTAGATGGTTTTCATGCTGCACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGTGCACATAaaaa ] [+] EMBL BM420567 [ AGAAGTTGCCCAGATTTGAACTGCCAAGAGCATTGACTCGGCCCATGAGAATTATACCGGGCACCTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCACCCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCC GTGGTCAGTTTGAGAGCAAACAGACCATCTACTTTTCACCAAGCTGTAATCATTTACATCCAAACTGTAGATGGTTTTCATGCTGCACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGTGCACATAGCTCAGCTTGTCAAACCTGAGTAAGATCTTACTGTTCCTGTTGCCCAAAA ] consensusID : consensus_11834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [TAGGGAAGGAAGAGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCTGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCNCACCGTCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCTCCTTCCTCCGGCCGANGCNGCCGCNGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGNGCCATGGCGTCACCCAAGCCCGGGGGCAAGCCAAGAAAGTGGTGGGCCTCATAAAGTTGGCGTTGGAGGCGGGAAGGCACGNGGCGTCGCGGTCGGCCCCGNGTTGGTGCAAGGGTGTGACATCATGTCTTCTGAAGGAGACAATGCAAGAGGCCGAGAAGCCGGTACATCATCCTGTCGANTCACCGTGTTCGATGTAAAAGTTACCTTATTTTGAGC] [+] EMBL OSS13334A [TAGGGAAGGAAGAGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCTGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCNCACCGTCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCTCCTTCCTCCGGCCGANGCNGCCGCNGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGNGCCATGGCGTCACCCAAGCCCGGGGGCAAGCCAAGAAAGTGGTGGGCCTCATAAAGTTGGCGTTGGAGGCGGGAAGGCACGNGGCGTCGCGGTCGGCCCCGNGTTGGTGCAAGGGTGTGACATCATGTCTTCTGAAGGAGACAATGCAAGAGGCCGAGAAGCCGGTACATCATCCTGTCGANTCACCGTGTTCGATGTAAAAGTTACCTTATTTTGAGC] consensusID : consensus_11834#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [TAGGGAAGGAAGAGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCNGNCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACCGTCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCGCTCCTTCCTCCGGCGACGCGCCGCGCTCGCTGCCCCCTCGCGAGGGCGTCGCGNAGGCATGCGCACCAAGCCGGGGAAGCNAGAAGTGTGGGCTATAAGTGCGTGAGGCGGAGCACGCGCGCGCGTCGCCCGGT] [+] EMBL OSS13382A [TAGGGAAGGAAGAGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCNGNCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACCGTCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCGCTCCTTCCTCCGGCGACGCGCCGCGCTCGCTGCCCCCTCGCGAGGGCGTCGCGNAGGCATGCGCACCAAGCCGGGGAAGCNAGAAGTGTGGGCTATAAGTGCGTGAGGCGGAGCACGCGCGCGCGTCGCCCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11834#0 ------------AGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGC 48 consensus_11834#1 TAGGGAAGGAAGAGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGC 60 consensus_11834#2 TAGGGAAGGAAGAGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGC 60 ************************************************ consensus_11834#0 TCCAAGCGCGCCGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACC 108 consensus_11834#1 TCCAAGCGCGCTGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCNCACC 120 consensus_11834#2 TCCAAGCGCGCNGNCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACC 120 *********** * ***************************************** **** consensus_11834#0 GCCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCCTCCTTCCTCCGGCCGACGCCG 168 consensus_11834#1 GTCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGC-TCCTTCCTCCGGCCGANGCNG 179 consensus_11834#2 GTCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCC-GC-TCCTTCCTCCGGC-GACGC-G 176 * ********************************* ** ************* ** ** * consensus_11834#0 CCGCCGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGGGCCATGGCGCCACCCAAG 228 consensus_11834#1 CCGCNGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGNGCCATGGCGTCACCCAAG 239 consensus_11834#2 CCGC-GCTCGCTGCCCCCTCGCGAGGG-----CGTCGCGNAGGC----ATGCGCACCAAG 226 **** ****************** ** ** ** ** * ***** consensus_11834#0 CCCGGGGGCAAGCCCAAGAAAGTGGTGGGCCTCATAAAGCTGGCGCTGGAGGCCGGGAAG 288 consensus_11834#1 CCCGGGGGCAAGCC-AAGAAAGTGGTGGGCCTCATAAAGTTGGCGTTGGAGGC-GGGAAG 297 consensus_11834#2 CC---GGGGAAGCN---AGAAGTG-TGGGCT--ATAA-----GTGCGTGAGGCGGAGCAC 272 ** *** **** ***** ***** **** * * ***** * * * consensus_11834#0 GCCACGCCGGCGCCGCCGGTCGGCCCCGCGCTTGGTGCCAAGGGTGTGAACATCATGTCC 348 consensus_11834#1 GC-ACGN-GGCGTCGC-GGTCGGCCCCGNG-TTGGTGC-AAGGGTGTGA-CATCATGTC- 350 consensus_11834#2 GC-GCGC--GCGTCGC---CCGGT------------------------------------ 290 ** ** *** *** *** consensus_11834#0 TTCTGCAAGGAGTACAATGCCAAGACGGCCGAGAAGGCCGGCTACATCATCCCTGTCGAG 408 consensus_11834#1 TTCTG-AAGGAG-ACAATGC-AAGA-GGCCGAGAAG-CCGG-TACATCATCC-TGTCGAN 403 consensus_11834#2 ------------------------------------------------------------ consensus_11834#0 ATCACCGTGTTCGATGATAAAAGTTTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTC 468 consensus_11834#1 -TCACCGTGTTCGATG-TAAAAGTT---ACCTTATTTTGAGC------------------ 440 consensus_11834#2 ------------------------------------------------------------ consensus_11834#0 CTTCTCCTCAAGGCAGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTT 528 consensus_11834#1 ------------------------------------------------------------ consensus_11834#2 ------------------------------------------------------------ consensus_11834#0 GGAAAAGTAACAGCAGATCAAGTACGTACAATAGCTCAAGAGAAGTTGCCAGATTTGAAC 588 consensus_11834#1 ------------------------------------------------------------ consensus_11834#2 ------------------------------------------------------------ consensus_11834#0 TGCAAGAGCATTGACTCGGCCATGAGAATTATAGCGGGCACTGCTGCTAATATGGGAATC 648 consensus_11834#1 ------------------------------------------------------------ consensus_11834#2 ------------------------------------------------------------ consensus_11834#0 GAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTG 708 consensus_11834#1 ------------------------------------------------------------ consensus_11834#2 ------------------------------------------------------------ consensus_11834#0 GCACCCATGAATCACCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCA 768 consensus_11834#1 ------------------------------------------------------------ consensus_11834#2 ------------------------------------------------------------ consensus_11834#0 ATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCCGTGGTCAGTTTGAGAGCAAACAGA 828 consensus_11834#1 ------------------------------------------------------------ consensus_11834#2 ------------------------------------------------------------ consensus_11834#0 CCATCTACTTTTCACAAGCTGTAATCATTTACATCCAAACTGTAGATGGTTTTCATGCTG 888 consensus_11834#1 ------------------------------------------------------------ consensus_11834#2 ------------------------------------------------------------ consensus_11834#0 CACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGT 948 consensus_11834#1 ------------------------------------------------------------ consensus_11834#2 ------------------------------------------------------------ consensus_11834#0 GCACATAGCTCAGCTTGTCAAACCTGAGTAAGATCTTACTGTTCCTGTTGCCCAAAAGCA 1008 consensus_11834#1 ------------------------------------------------------------ consensus_11834#2 ------------------------------------------------------------ consensus_11834#0 TGCCTGTTGTTTGTTTCAAAAAAAAAAAA 1037 consensus_11834#1 ----------------------------- consensus_11834#2 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||