cluster # 11835

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Oryza sativa
cluster # 11835 cluster # 11835 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11835#0 length = 846 sequences # 7

consensus_11835#1 length = 393 sequences # 2

consensusID : consensus_11835#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 846
fasta sequence

                              [TTTTTGAAGATGGAAAAAAAAGGGGACCATGCTTCATGGGTTATGTTTTCTGTGATCCAATCATTGCAA-GGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAAGAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCATCTTCACTTTACCGCTCCTATATACAAGTATCTTCCCCATGAAACCTTCTGGAAGGTCTTTGAGCTTAGAGCCAAGGACTTTTGGTGGCCTTGTTCCTGCATGCATCTCCTTAGAGCTTGTGCTTGTAGGTTCAGCATCCACCCCATCGCCTTTATCTGTCTCTGCGACTGAGTCTGGCTGCTTTGGTAATGGAAGAGATGCAGGCATCTGGAAGAAAAGCAACTGTGCTTTGTCTGACCGATGCATTAGTCCAAGTTCTTCTGCTGTGGTTAATTCACCATCTTGGGCTCCGGTGGCAGAAGACTCTC]

[-] EMBL BI799622             [TTTTTGAAGATGGAAAAAAAAGGGAACCATGCTTCATGGGTTATGTTTTCTGTGATCCAATCATTGCAAGGGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAAGAGGACACAAAATCGCTCAGCAGTTCACTTTGACA TTTGTGACTTGCTGGCTAACTGATTCTCCACCG TTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTGTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTG CGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCA                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB643648             [                     GGGGACCATGCTTCATGGGTTATGTTTTCTGTGATCCAATCATTGCAA GGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAAGAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGA                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB643687             [                     GGGGACCATGCTTCATGGGTTATGTTTTCTGTGATCCAATCATTGCAA GGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAAGAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACAGGAAAGA                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU225376             [                  gccgctGACCATGCTTCATGGGTTATGTTTTCTGTGATCCAATCATTGCAA GGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAAGAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB664239             [                                                                                                  AATTTGACTGCTATAGATGAGAAGAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCATCTTCACTTTACCGCTCCTATATACAAGTATCTTCCCCATGAAACCTTCTGGAAGGTCTTTGAGCTTAGAGCCAAGGACTTTTGGTGGCCTTGTTCCTGCATGCATCTCCTTAGAGCTTGTGCTTGTAGGTTCAGCATCCACCCCATCGCCTTTATCTGTCTCTGCGACTGAGTCTGGCTGCTTTGGTAATGGAAGAGATGCAGGCATCTGGAAGAAAAGCAACTGTGCTTTGTCTGACCGATGCATTAGTCCAAGTTCTTCTGCTGTGGTTAATTCACCATCTTGGGCTCCGGTGGCAGAAGACTCTC]
[+] EMBL CB618325             [                                                                                                                         agaccccttAAAGGGCTCAGCAGNTCACTTTGACATTTTGTGACTTGCTGGCTAACTGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCG TTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCATCTTCACTTTACCGCTCCTATATACAAGTATCTTCCCCATGAAACCTTCTGGAAGGTCTTTGAGCTTAGAGCCAAGGACTTTTGGTGGCCTTGTTCCTGCATGCATCTCCTTAGAGCTTGTGCTTGTAGGTTCAGCATCCACCCCATCGCCTTTATCTGTCTCTGCGACTGAGTCTGGCTGCTTTGGTAATGGAAGAGATGCAGGCATCTGGAAGAAAAGCAACTGTGCTTTGTCTGACCGATGCATTAGTCCAAGTTCTTCTGCTGTGGTTAATTCAC                              ]
[-] EMBL CA998479             [                                                                                                                                                                                                                                      TAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCATCTTCACTTTACCGCTCCTATATACAAGTATCTTCCCCATGAAACCTTCTGGAAGGTCTTTGAGCTTAGAGCCAAGGACTTTTGGTGGCCTTGTTCCTGCATGCATCTCCTTAGAGCTTGTGCTTGTAGGTTCAGCATCCACCCCATCGCCTTTATCTGTCTCTGCGACTGAGTCTGGCTGCTTTGGTAATGGAAGAGATGCAGGCATCTGGAAGAAAAGCAACTGTGCTTTGTCTGACCGATGCATTA                                                            ]




>consensus_11835#0
TTTTTGAAGATGGAAAAAAAAGGGGACCATGCTTCATGGGTTATGTTTTCTGTGATCCAA
TCATTGCAAGGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAA
GAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGAT
TCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCG
TTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAAC
AAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACG
CTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCT
TGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCT
GGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCATCT
TCACTTTACCGCTCCTATATACAAGTATCTTCCCCATGAAACCTTCTGGAAGGTCTTTGA
GCTTAGAGCCAAGGACTTTTGGTGGCCTTGTTCCTGCATGCATCTCCTTAGAGCTTGTGC
TTGTAGGTTCAGCATCCACCCCATCGCCTTTATCTGTCTCTGCGACTGAGTCTGGCTGCT
TTGGTAATGGAAGAGATGCAGGCATCTGGAAGAAAAGCAACTGTGCTTTGTCTGACCGAT
GCATTAGTCCAAGTTCTTCTGCTGTGGTTAATTCACCATCTTGGGCTCCGGTGGCAGAAG
ACTCTC

consensusID : consensus_11835#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 393
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTATGNNNTCTGTGATCCAATCATTGCAAGGACAAACAATGTA-GGTNTCGNTGACAAAATTTGACTGCTATAGATGAGAAGAGGNCACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACNGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGTGCAAACAAAATTCCCATGAAATGGTTCATATGGNCATGACTTTTGCACATAAGGCATGGGCTTACGGNTTCCATCTTGTCGGAAGGATCCAGCAGATGCTCGAAGTCCGGGGGTACA]

[-] EMBL AU058093             [TTTTTTTTTTTTTTTTTTTTTTTTATGNNNTCTGTGATCCAATCATTGCAAGGACAAACAATGTA GGTNTCGNTGACAAAATTTGACTGCTATAGATGAGAAGAGGNCACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACNGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGTGCAAACAAAATTCCCATGAAATGGTTCATATGGNCATGACTTTTGCACATAAGGCATGGGCTTACGGNTTCCATCTTGTCGGAAGGATCCAGCAGATGCTCGAAGTCCGGGGGTACA]
[-] EMBL AU097044             [TTTTTTTTTTTTTTTTTTTTTTTTATGTTTTCTGTGATCCAATCATTGCAAGGACAAACAATGTAGGGTATCGATGACAAAATTTGACTGCTATAGATGAGAAGNGGACACAAAATCGCTCAGCAGTTCANTTTGACATTTTGNGACTTGCTGGCTAACTGATTCTCCNCCGTTTGATATATTCCCACGGAAACTCAAAATTGCCNTTTTGn                                                                                                                                                                                      ]




>consensus_11835#1
TTTTTTTTTTTTTTTTTTTTTTTTATGNNNTCTGTGATCCAATCATTGCAAGGACAAACA
ATGTAGGTNTCGNTGACAAAATTTGACTGCTATAGATGAGAAGAGGNCACAAAATCGCTC
AGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACNGATTCTCCACCGTTTGATATA
TTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAA
GCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGTGCAAACAAAATTCCCATGAAATGG
TTCATATGGNCATGACTTTTGCACATAAGGCATGGGCTTACGGNTTCCATCTTGTCGGAA
GGATCCAGCAGATGCTCGAAGTCCGGGGGTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11835#0      TTTTTGAAGATGGAAAAAAAAGGGGACCATGCTTCATGGGTTATGTTTTCTGTGATCCAA 60
consensus_11835#1      ------------------TTTTTTTTTTTTTTTTTTTTTTTTATGNNNTCTGTGATCCAA 42
                                                    *  **  *   *****   ************

consensus_11835#0      TCATTGCAAGGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAA 120
consensus_11835#1      TCATTGCAAGGACAAACAATGTAGGTNTCGNTGACAAAATTTGACTGCTATAGATGAGAA 102
                       ************************** *** *****************************

consensus_11835#0      GAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGAT 180
consensus_11835#1      GAGGNCACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACNGAT 162
                       **** *************************************************** ***

consensus_11835#0      TCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCG 240
consensus_11835#1      TCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCG 222
                       ************************************************************

consensus_11835#0      TTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAAC 300
consensus_11835#1      TTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGTGCAAAC 282
                       ***************************************************** ******

consensus_11835#0      AAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACG 360
consensus_11835#1      AAAATTCCCATGAAATGGTTCATATGGNCATGACTTTTGCACATAAGGCATGGGCTTACG 342
                       *************************** ********************************

consensus_11835#0      -CTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGC 419
consensus_11835#1      GNTTCCATCTTGTCGGAAGGATCCAGCAGATGCTCGAAGTCCGGGGGTACA--------- 393
                         ************* *** ***************** ******** ****         

consensus_11835#0      TTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCC 479
consensus_11835#1      ------------------------------------------------------------
                                                                                   

consensus_11835#0      TGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCATC 539
consensus_11835#1      ------------------------------------------------------------
                                                                                   

consensus_11835#0      TTCACTTTACCGCTCCTATATACAAGTATCTTCCCCATGAAACCTTCTGGAAGGTCTTTG 599
consensus_11835#1      ------------------------------------------------------------
                                                                                   

consensus_11835#0      AGCTTAGAGCCAAGGACTTTTGGTGGCCTTGTTCCTGCATGCATCTCCTTAGAGCTTGTG 659
consensus_11835#1      ------------------------------------------------------------
                                                                                   

consensus_11835#0      CTTGTAGGTTCAGCATCCACCCCATCGCCTTTATCTGTCTCTGCGACTGAGTCTGGCTGC 719
consensus_11835#1      ------------------------------------------------------------
                                                                                   

consensus_11835#0      TTTGGTAATGGAAGAGATGCAGGCATCTGGAAGAAAAGCAACTGTGCTTTGTCTGACCGA 779
consensus_11835#1      ------------------------------------------------------------
                                                                                   

consensus_11835#0      TGCATTAGTCCAAGTTCTTCTGCTGTGGTTAATTCACCATCTTGGGCTCCGGTGGCAGAA 839
consensus_11835#1      ------------------------------------------------------------
                                                                                   

consensus_11835#0      GACTCTC 846
consensus_11835#1      -------