Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11837 cluster # 11837       Sequences # 9       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11837#0 length = 2082 sequences # 5  
 consensus_11837#1 length = 767 sequences # 4  
consensusID : consensus_11837#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2082
fasta sequence 
                              [AACCCTCTTTGCTCTCTGCTCCGGTCGCCGGCGGCGATGGCGGCGGCGGCGGTGGGGGCGTACCGGTCGGCGGGGAGGAGGAGGGACGCCTTCGCGGCGGCGGCGGAGGACGCCGGCTCCGCCACCACGCGCGGGCGGGCCGCGGCCGCCGGGGGAAGCGGCGGGCTGCTCCGGCGGTCGAGGAGCCTGAGTAGGTTCCCGCCGCCATCGCCCTCCCCGGAGGACGCGGCCACGCCCTCCTCGAGGTTCGTCAACAAGGTCAGGGGCGGCGGCCGGGGCGGAGCGGGGTTGCCGCCGGAGATCAGCCTCGATGACCTCGCCGACGAGTTCTTCCGGGCCAGGGCGGAGTCCGAGGACGACGACGACGACGAGGAGGCGGTGGTGGTCGTGCGCGGGGAGGAGTCGCGTGGGCGGCTCAGGTTCCCGGCGCCAGCGGAGAAGGGCGGCGGTCGGCGGAGCTCCACCGCGCGGTACGCCAGGGAGACGGAGTCGTCGCGGCAGCGCGGGAGGTCGGTGTCGCGGCCGCCGGCCGAGAGGCGAGGCGGAGCCACTGCTGTCGCCAATGGCGGGGCTGCTGCCGCGGGGCGGCAGCGGTATGCATCCGTCGACCGGCGCGCTTCGATGGATCGGCACCGATGGTGTGATTCGGATAATGATATGGACATTTCTCACCGGTATGGTTCTAGGGGAATAAATACCAAATCCAGCAATAATAGCCTGCAGAACTCATCATTCCATAAGACGGCTAAAGTAAATCAATCGTTGAGGAAGTCTACAAGTCAAAAAGATTTCTTACATTCACGAGACAGCAGCTCAAGCCATTCTTCAATAACTGATGATGAATTTCGGGACTCTTTTCATAGCAGAAGTCAGAAGGGGATTCGGGCAGTTTATACCCTTGAAAAGGACCGCCTGAGTAATAATGAGGATGAAAATGCACTGTATGACGTGATGCGTAAAGAAGTCCGGCAAGCTGTTGATGAAATCAGGACTCAGCTTGAAAAGGTCGTGACAAAATCTGAACCTTCAGAAAAAGCAACAAGCGCTGATGCACAACCAACTCAGGTTATTAATGAGCTCCGCAGGAGTTACACTAGCAAGTTGGAAGAGTCAGAGATGCGGAAACAGGAATTGTTAGCTCAATTGGCAGCGGAAGAACAACGTGGGCATGAACTCACAAAAATAGTCAAGGAATTGCTACCTACTCCTAAGAAGAATATGAATTCGGAAAGGCAACCACGATATAGAAGAAGAAGCAATGATAGAGCCAGGGTGTCAAGACGTCTTACTGAAGAGGCTGAGCAATACTTCGAAGATTTCCTGTCAAATGTTGAAGATACTGATTTTTCATCTTTTGATGGAGAAAGAAGTGATACAAGTTCAAGCAGAAGAGATGTGGTACAAAACACCAAGATCGAAACTCCAATAACGCTTCCAAAAGTTGCTTCACCCGTCGAGGCAGACGGGGTTGTCCTTCCCTGGCTGCAATGGGAAACAAGCAACGACCTTCAAACCTCTCCATGCAAACCAAAGACACAGGGAGCAAGTACCGCATGCAGCACCAGCAGTCGCACTATGAGCAGCCGCGGGAGTTGGAGTCCTGGAGATCATGATAGCGCAGCTGGCTCCAAGGATACACTTCTGACAAGGTTCGAGGAGGCTGCGTCTCGCCGAAGCAGCTGCCCCGATAACACTCAAAGATCGTCATTTCACATCGATGACTACATGCATTTGCGGAGGAGCCACGATCTTCTCTTGGAGCGATGGAGGCAAAAGGAAAGAATTGGCGACGGTGGCCTTATCCTGTGCAGTAGATCATCAATAATGTAGGTTATGGCCCATGGTTCATATGTAGAAGCAGATGATTAGCATATCAAAAACAATGTAGCCATTATTCATCTGTGTGCTTACCCATTAGGTTGTTGGTTGTGATGAGCTAAGGCCAAAAGTGTGTACATTTGCAAACTTGACATAATTACTTCATGGACCTGTGGTGCTTAGCTATATTCTAAATTTGTATAGACGTTTGCTTTTAACTTAGTCCTAAATTTGTTTACCAACCTCAGCCATAAAGATATACGA]

[+] EMBL CB672023             [AACCCTCTTTGCTCTCTGCTCCGGTCGCCGGCGGCGATGGCGGCGGCGGCGGTGGGGGCGTACCGGTCGGCGGGGAGGAGGAGGGACGCCTTCGCGGCGGCGGCGGAGGACGCCGGCTCCGCCACCACGCGCGGGCGGGCCGCGGCCGCCGGGGGAAGCGGCGGGCTGCTCCGGCGGTCGAGGAGCCTGAGTAGGTTCCCGCCGCCATCGCCCTCCCCGGAGGACGCGGCCACGCCCTCCTCGAGGTTCGTCAACAAGGTCAGGGGCGGCGGCCGGGGCGGAGCGGGGTTGCCGCCGGAGATCAGCCTCGATGACCTCGCCGACGAGTTCTTCCGGGCCAGGGCGGAGTCCGAGGACGACGACGACGACGAGGAGGCGGTGGTGGTCGTGCGCGGGGAGGAGTCGCGTGGGCGGCTCAGGTTCCCGGCGCCAGCGGAGAAGGGCGGCGGTCGGCGGAGCTCCACCGCGCGGTACGCCAGGGAGACGGAGTCGTCGCGGCAGCGCGGGAGGTCGGTGTCGCGGCCGCCGGCCGAGAGGCGAGGCGGAGCCACTGCTGTCGCCAATGGCGGGGCTGCTGCCGCGGGGCGGCATCGGTATGCATCCGTCGACCGGCGCGCTTCTATGGATCGGCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK065646             [                                                                                                                                                                                                                                                              CAAGGTCAGGGGCGGCGGCCGGGGCGGAGCGGGGTTGCCGCCGGAGATCAGCCTCGATGACCTCGCCGACGAGTTCTTCCGGGCCAGGGCGGAGTCCGAGGACGACGACGACGACGAGGAGGCGGTGGTGGTCGTGCGCGGGGAGGAGTCGCGTGGGCGGCTCAGGTTCCCGGCGCCAGCGGAGAAGGGCGGCGGTCGGCGGAGCTCCACCGCGCGGTACGCCAGGGAGACGGAGTCGTCGCGGCAGCGCGGGAGGTCGGTGTCGCGGCCGCCGGCCGAGAGGCGAGGCGGAGCCACTGCTGTCGCCAATGGCGGGGCTGCTGCCGCGGGGCGGCAGCGGTATGCATCCGTCGACCGGCGCGCTTCGATGGATCGGCACCGATGGTGTGATTCGGATAATGATATGGACATTTCTCACCGGTATGGTTCTAGGGGAATAAATACCAAATCCAGCAATAATAGCCTGCAGAACTCATCATTCCATAAGACGGCTAAAGTAAATCAATCGTTGAGGAAGTCTACAAGTCAAAAAGATTTCTTACATTCACGAGACAGCAGCTCAAGCCATTCTTCAATAACTGATGATGAATTTCGGGACTCTTTTCATAGCAGAAGTCAGAAGGGGATTCGGGCAGTTTATACCCTTGAAAAGGACCGCCTGAGTAATAATGAGGATGAAAATGCACTGTATGACGTGATGCGTAAAGAAGTCCGGCAAGCTGTTGATGAAATCAGGACTCAGCTTGAAAAGGTCGTGACAAAATCTGAACCTTCAGAAAAAGCAACAAGCGCTGATGCACAACCAACTCAGGTTATTAATGAGCTCCGCAGGAGTTACACTAGCAAGTTGGAAGAGTCAGAGATGCGGAAACAGGAATTGTTAGCTCAATTGGCAGCGGAAGAACAACGTGGGCATGAACTCACAAAAATAGTCAAGGAATTGCTACCTACTCCTAAGAAGAATATGAATTCGGAAAGGCAACCACGATATAGAAGAAGAAGCAATGATAGAGCCAGGGTGTCAAGACGTCTTACTGAAGAGGCTGAGCAATACTTCGAAGATTTCCTGTCAAATGTTGAAGATACTGATTTTTCATCTTTTGATGGAGAAAGAAGTGATACAAGTTCAAGCAGAAGAGATGTGGTACAAAACACCAAGATCGAAACTCCAATAACGCTTCCAAAAGTTGCTTCACCCGTCGAGGCAGACGGGGTTGTCCTTCCCTGGCTGCAATGGGAAACAAGCAACGACCTTCAAACCTCTCCATGCAAACCAAAGACACAGGGAGCAAGTACCGCATGCAGCACCAGCAGTCGCACTATGAGCAGCCGCGGGAGTTGGAGTCCTGGAGATCATGATAGCGCAGCTGGCTCCAAGGATACACTTCTGACAAGGTTCGAGGAGGCTGCGTCTCGCCGAAGCAGCTGCCCCGATAACACTCAAAGATCGTCATTTCACATCGATGACTACATGCATTTGCGGAGGAGCCACGATCTTCTCTTGGAGCGATGGAGGCAAAAGGAAAGAATTGGCGACGGTGGCCTTATCCTGTGCAGTAGATCATCAATAATGTAGGTTATGGCCCATGGTTCATATGTAGAAGCAGATGATTAGCATATCAAAAACAATGTAGCCATTATTCATCTGTGTGCTTACCCATTAGGTTGTTGGTTGTGATGAGCTAAGGCCAAAAGTGTGTACATTTGCAAACTTGACATAATTACTTCATGGACCTGTGGTGCTTAGCTATATTCTAAATTTGTATAGACGTTTGCTTTTAACTTAGTCCTAAATTTGTT                            ]
[+] EMBL CB676149             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAGAACGGCGGCGGTCGGCGGAGCTCCACCGCGCGGTACGCCAGGGAGACGGAGTCGTCGCGGCAGCGCGGGAGGTCCGTGTCGCGGCCGCCGGCCGAGAGGCGAGGCGGAGCCACTGCTGTCGCCAATGGCGGGGCTGCTGCCGCGGGGCGGCAGCGGTATGCATCCGTCGACCGGCGCGCTTCGATGGATCGGCACCGATGGTGTGATTCGGATAATGATATGGACATTTCTCACCGGTATGGTTCTAGGGGAATAAATACCAAATCCAGCAATAATAGCCTGCAGAACTCATCATTCCATAAGACGGCTAAAGTAAATCAATCGTTGAGGAAGTCTACAAGTCAAAAAGATTTCTTACATTCACGAGACAGCAGCTCAAGCCATTCTTCAATAACTGATGATGAATTTCGGGACTCTTTTCATAGCAGAAATCAGAAGGGGATTCGGGCAGTTTATACCCTTGAAAAGGACCGCCTGAGTAATAATGAGGATGAAAATGCACTGTATGACGTGATGCGTAAAGAAGTCCGGCAAGCTGTTGATGAAATCAGGACTCAGCTTGAAAAGGTCGTGACAAAATCTGAACCTTCAGAAAAAGCAACAAGCGCTGATGCACAACCAACTCAGGTTATTAATGAGCTCCGCAGGAGTTACACTAGCAAGTTGGAAGAGTCAGAGATGCGGAAACAGGAATTGTTAGCTCAATTGGCAGCGGAAGAACAACGTGGGCATGAACTCACAAAAATAGTCAAGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU088657             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGCAGTTTATACCCTTGAAAAGGACCGCCTGAGTAATAATGAGGATGAAAATGCACTGTATGACGTGATGCGTAAAGAAGTCCGGCAAGCTGTTGATGAAATCAGGACTCAGCTTGAAAAGGTCGTGACAAAATCTGAACCTTCAGAAAAAGCAACAAGCGCTGATGCACAACCAACTCAGGTTATTAATGAGCTCCGCA GATTTACACTAGCAAGTTGGAAGAGTCAGAGATGCGGAAACAGGAATTGTTAGCTCAATTGGCAGCGGAAGAACAACGTGGGCATGAACTCACAAAAATAGTCAAGGAATTGCTACCTACTCCTAAGAAGAATATGAATTCGGAAAGGCAACCACGATATAGAAGAAGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK058339             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAACAGGAATTGTTAGCTCAATTGGCAGCGGAAGAACAACGTGGGCATGAACTCACAAAAATAGTCAAGGAATTGCTACCTACTCCTAAGAAGAATATGAATTCGGAAAGGCAACCACGATATAGAAGAAGAAGCAATGATAGAGCCAGGGTGTCAAGACGTCTTACTGAAGAGGCTGAGCAATACTTCGAAGATTTCCTGTCAAATGTTGAAGATACTGATTTTTCATCTTTTGATGGAGAAAGAAGTGATACAAGTTCAAGCAGAAGAGATGTGGTACAAAACACCAAGATCGAAACTCCAATAACGCTTCCAAAAGTTGCTTCACCCGTCGAGGCAGACGGGGTTGTCCTTCCCTGGCTGCAATGGGAAACAAGCAACGACCTTCAAACCTCTCCATGCAAACCAAAGACACAGGGAGCAAGTACCGCATGCAGCACCAGCAGTCGCACTATGAGCAGCCGCGGGAGTTGGAGTCCTGGAGATCATGATAGCGCAGCTGGCTCCAAGGATACACTTCTGACAAGGTTCGAGGAGGCTGCGTCTCGCCGAAGCAGCTGCCCCGATAACACTCAAAGATCGTCATTTCACACCGATGACTACATGCATTTGCGGAGGAGCCACGATCTTCTCTTGGAGCGATGGAGGCAAAAGGAAAGAATTGGCGACGGTGGCCTTATCCTGTGCAGTAGATCATCAATAATGTAGGTTATGGCCCATGGTTCATATGTAGAAGCAGATGATTAGCATATCAAAAACAATGTAGCCATTATTCATCTGTGTGCTTACCCATTAGGTTGTTGGTTGTGATGAGCTAAGGCCAAAAGTGTGTACATTTGCAAACTTGACATAATTACTTCATGGACCTGTGGTGCTTAGCTATATTCTAAATTTGTATAGACGTTTGCTTTTAACTTAGTCCTAAATTTGTTTACCAACCTCAGCCATAAAGATATACGA]




>consensus_11837#0
AACCCTCTTTGCTCTCTGCTCCGGTCGCCGGCGGCGATGGCGGCGGCGGCGGTGGGGGCG
TACCGGTCGGCGGGGAGGAGGAGGGACGCCTTCGCGGCGGCGGCGGAGGACGCCGGCTCC
GCCACCACGCGCGGGCGGGCCGCGGCCGCCGGGGGAAGCGGCGGGCTGCTCCGGCGGTCG
AGGAGCCTGAGTAGGTTCCCGCCGCCATCGCCCTCCCCGGAGGACGCGGCCACGCCCTCC
TCGAGGTTCGTCAACAAGGTCAGGGGCGGCGGCCGGGGCGGAGCGGGGTTGCCGCCGGAG
ATCAGCCTCGATGACCTCGCCGACGAGTTCTTCCGGGCCAGGGCGGAGTCCGAGGACGAC
GACGACGACGAGGAGGCGGTGGTGGTCGTGCGCGGGGAGGAGTCGCGTGGGCGGCTCAGG
TTCCCGGCGCCAGCGGAGAAGGGCGGCGGTCGGCGGAGCTCCACCGCGCGGTACGCCAGG
GAGACGGAGTCGTCGCGGCAGCGCGGGAGGTCGGTGTCGCGGCCGCCGGCCGAGAGGCGA
GGCGGAGCCACTGCTGTCGCCAATGGCGGGGCTGCTGCCGCGGGGCGGCAGCGGTATGCA
TCCGTCGACCGGCGCGCTTCGATGGATCGGCACCGATGGTGTGATTCGGATAATGATATG
GACATTTCTCACCGGTATGGTTCTAGGGGAATAAATACCAAATCCAGCAATAATAGCCTG
CAGAACTCATCATTCCATAAGACGGCTAAAGTAAATCAATCGTTGAGGAAGTCTACAAGT
CAAAAAGATTTCTTACATTCACGAGACAGCAGCTCAAGCCATTCTTCAATAACTGATGAT
GAATTTCGGGACTCTTTTCATAGCAGAAGTCAGAAGGGGATTCGGGCAGTTTATACCCTT
GAAAAGGACCGCCTGAGTAATAATGAGGATGAAAATGCACTGTATGACGTGATGCGTAAA
GAAGTCCGGCAAGCTGTTGATGAAATCAGGACTCAGCTTGAAAAGGTCGTGACAAAATCT
GAACCTTCAGAAAAAGCAACAAGCGCTGATGCACAACCAACTCAGGTTATTAATGAGCTC
CGCAGGAGTTACACTAGCAAGTTGGAAGAGTCAGAGATGCGGAAACAGGAATTGTTAGCT
CAATTGGCAGCGGAAGAACAACGTGGGCATGAACTCACAAAAATAGTCAAGGAATTGCTA
CCTACTCCTAAGAAGAATATGAATTCGGAAAGGCAACCACGATATAGAAGAAGAAGCAAT
GATAGAGCCAGGGTGTCAAGACGTCTTACTGAAGAGGCTGAGCAATACTTCGAAGATTTC
CTGTCAAATGTTGAAGATACTGATTTTTCATCTTTTGATGGAGAAAGAAGTGATACAAGT
TCAAGCAGAAGAGATGTGGTACAAAACACCAAGATCGAAACTCCAATAACGCTTCCAAAA
GTTGCTTCACCCGTCGAGGCAGACGGGGTTGTCCTTCCCTGGCTGCAATGGGAAACAAGC
AACGACCTTCAAACCTCTCCATGCAAACCAAAGACACAGGGAGCAAGTACCGCATGCAGC
ACCAGCAGTCGCACTATGAGCAGCCGCGGGAGTTGGAGTCCTGGAGATCATGATAGCGCA
GCTGGCTCCAAGGATACACTTCTGACAAGGTTCGAGGAGGCTGCGTCTCGCCGAAGCAGC
TGCCCCGATAACACTCAAAGATCGTCATTTCACATCGATGACTACATGCATTTGCGGAGG
AGCCACGATCTTCTCTTGGAGCGATGGAGGCAAAAGGAAAGAATTGGCGACGGTGGCCTT
ATCCTGTGCAGTAGATCATCAATAATGTAGGTTATGGCCCATGGTTCATATGTAGAAGCA
GATGATTAGCATATCAAAAACAATGTAGCCATTATTCATCTGTGTGCTTACCCATTAGGT
TGTTGGTTGTGATGAGCTAAGGCCAAAAGTGTGTACATTTGCAAACTTGACATAATTACT
TCATGGACCTGTGGTGCTTAGCTATATTCTAAATTTGTATAGACGTTTGCTTTTAACTTA
GTCCTAAATTTGTTTACCAACCTCAGCCATAAAGATATACGA

consensusID : consensus_11837#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 767
fasta sequence 
                              [GCAATGATAGAGCCAGGGTGTCAAGACGTTTTACTGAAGAGGGTGAGCAATACTTCGAAGATTTCCTGTCAAATGTTGAAGATACTGATTTTTCATCTTTTGATGGAGAAAGAAGTGATACAAGTTCAAGCAGAAGAGATGTGGTACAAAACACCAAGATCGAAACTCCAATAACGCTTCCAAAAGTTGCTTCACCCGTCGAGGCAGACGGGGTTGTCCTTCCCTGG-CTGCAATGGGAAACAAGCA-ACGACCTTCAAACCTCTCCATGCAAACCAAAGACACAGGGAGCAAGTACCGCATGCAGCACCAGCAGTCGCACTATGAGCAGCCGCGGG-AGTTGGAGTCCTGGAGATCATGATAGCGCAGCTGGCTCCAAGGATACACTTCTGACAAGGTTCGAGGAGGCTGCGTCTCGCCGAAGCAGCTGCCCCGATAACACTCAAAGATCGTCATTTCACATCGATGACTACATGCATTTGCGGAGGAGCCACGATCTTCTCTTGGAGCGATGGAGGCAAAAGGAAAGAATTGGCGACGGTGGCCTTATCCTGTGCAGTAGATCATCAATAATGTAGGTTATGGCCCATGGTTCATATGTAGAAGCAGATGATTAGCATATCAAAAACAATGTAGCCATTATTCATCTGTGTGCTTACCCATTAGGTTGTTGGTTGTGATGAGCTAAGGCCAAAAGTGTGTACATTTGCAAACTTGACATAATTACTTCATGGACCTGTGGTGCTTAGCTAAAAAAAAAAAAGAAAAAA]

[-] EMBL CB672024             [GCAATGATAGAGCCAGGGTGTCAAGACGTTTTACTGAAGAGGGTGAGCAATACTTCGAAGATTTCCTGTCAAATGTTGAAGATACTGATTTTTCATCTTTTGATGGAGAAAGAAGTGATACAAGTTCAAGCAGAAGAGATGTGGTACAAAACACCAAGATCGAAACTCCAATAACGCTTCCAAAAGTTGCTTCACCCGTCGAGGCAGACGGGGTTGTCCTTCCCTGG CTGCAATGGGAAACAAGCA ACGACCTTCAAACCTCTCCATGCAAACCAAAGACACAGGGAGCAAGTACCGCATGCAGCACCAGCAGTCGCACTATGAGCAGCCGCGGG AGTTGGAGTCCTGGAGATCATGATAGCGCAGCTGGCTCCAAGGATACACTTCTGACAAGGTTCGAGGAGGCTGCGTCTCGCCGAAGCAGCTGCCCCGATAACACTCAAAGATCGTCATTTCACATCGATGACTACATGCATTTGCGGAGGAGCCACGATCTTCTCTTGGAGCGATGGAGGCAAAAGGAAAGAATTGGCGACGGTGGCCTTATCCTGTGCAGTAGATCATCAATAATGTAGGTTATGGCCCATGGTTCATATGTAGAAGCAGATGATTAGCATATCAAAAACAATGTAGCCATTATTCATCTGTGTGCTTACCCATTAGGTTGTTGGTTGTGATGAGCTAAGGCCAAAAGTGTGTACATTTGCAAACTTGACATAATTACTTCATGGACCTGTGGTGCTTAGCTAAAAAAAAAAAAGA     ]
[-] EMBL CB676150             [    TGATAGAGCCAGGGTGTCAAGACGTCTTACTGAAGAGGCTGAGCAATACTTCGAAGATTTCCTGTCAAATGTTGAAGATACTGATTTTTCATCTTTTGATGGAGAAAGAAGTGATACAAGTTCAAGCAGAAGAGATGTGGTACAAAACACCAAGATCGAAACTCCAATAACGCTTCCAAAAGTTGCTTCACCCGTCGAGGCAGACGGGGTTGTCCTTCCCTGG CTGCAATGGGAAACAAGCA ACGACCTTCAAACCTCTCCATGCAAACCAAAGACACAGGGAGCAAGTACCGCATGCAGCACCAGCAGTCGCACTATGAGCAGCCGCGGG AGTTGGAGTCCTGGAGATCATGATAGCGCAGCTGGCTCCAAGGATACACTTCTGACAAGGTTCGAGGAGGCTGCGTCTCGCCGAAGCAGCTGCCCCGATAACACTCAAAGATCGTCATTTCACATCGATGACTACATGCATTTGCGGAGGAGCCACGATCTTCTCTTGGAGCGATGGAGGCAAAAGGAAAGAATTGGCGACGGTGGCCTTATCCTGTGCAGTAGATCATCAATAATGTAGGTTATGGCCCATGGTTCATATGTAGAAGCAGATGATTAGCATATCAAAAACAATGTAGCCATTATTCATCTGTGTGCTTACCCATTAGGTTGTTGGTTGTGATGAGCTAAGGCCAAAAGTGTGTACATTTGCAAACTTGACATAATTACTTCATGGACCTGTGGTGCTTAGCTATAAAAAAAgga       ]
[+] EMBL AU088656             [                                                                           tgaAAGATACTGATTTTTCATCTTTTGATGGAGAAAGAAGTGATACAAGTTCAAGCAGAAGAGATGTGGTACAAAACACCAAGNTCGAAACTCCAATAACGCTTCCAAAAGTTGCTTCACCCGTCGAGGCAGACGGGGTTGTCCTTCCCTGG CTGCAATGGGAAACAAGCA ACGACCTTCAAACCTCTCCATGCAAACCAAAGACACAGGGAGCAAGTACCGCATGCAGCACCAGCAGTCGCACTATGAGCAGCCGCGGG AGTTGGAGTCCTGGAGATCATGATAGCGCAGCTGGCTCCAAGGATACACTTCTGACAAGGTTCGAGGAGGCTGCGTCTCGCCGAAGCAGCTGCCCCGATAACACTCAAAGATCGTCATTTCACATCGATGACTACATGCATTTGCGGAGGAGCCACGATCTTCTCTTGGAGCGATGGAGGCAAAAGGAAAGAATTGGCGACGGTGGCCTTATCCTGTGCAGTAGATCATCAATAATGTAGGTTATGGCCCATGGTTCATATGTAGAAGCAGATGATTAGCATATCAAAAACAATGTAGCCATTATTCATCTGTGTGCTTACCCATTAGGTTGTTGGTTGTGATGAGCTAAGGCCAAAAGTGTGTACATTTGCAAACTTGACATAATTACTTCATGGACCTGTGGTGCTTAGCTATAAAAAAAAAAAAAAAAA]
[+] EMBL BI805979             [                                                                                                                                                                                           TGCTTCACCCGTCGA GCAGACGGGTTTGTCCTTCCCTGGCCTGCAATGGGAACCAAGCATACGACCTTCAAACCTCTCCATGCAAACCAAAGACACAGGGAGCAAGTACCGCATGCAGCACCAGCAGTCGCACTATGAGCAGCCGCGGGTAGTTGGAGTCCTGGAGATCATGATAGCGCAGCTGGCTCCAAGGATACACTTCTGACAAGGTTCGAGGAGGCTGCGTCTCGCCGAAGCAGCTGCCCCGATAACACTCAAAGATCGTCATTTCACATCGATGACTACATGCATTTGCGGAGGAGCCACGATCTTCTCTTGGAGCGATGGAGGCAAAAGGAAAGAATTGGCGACGGTGGCCTTATCCTGTGCAGTAGATCATCAATAATGTAGGTTATGGCCCATGGTTCATATGTAGAAGCAGATGATTAGCATATCAAAAAC ATGTAGCCATTATTCATCTGTGTGCTTACCCATTAGGTTGTTGGTTGTGATGAGCTAAGGCCAAAAGTGTGTACATTTGCAAACTTGACATAATTACTTCATGGACCTGTGGTGCTTAGCTAAA                ]




>consensus_11837#1
GCAATGATAGAGCCAGGGTGTCAAGACGTTTTACTGAAGAGGGTGAGCAATACTTCGAAG
ATTTCCTGTCAAATGTTGAAGATACTGATTTTTCATCTTTTGATGGAGAAAGAAGTGATA
CAAGTTCAAGCAGAAGAGATGTGGTACAAAACACCAAGATCGAAACTCCAATAACGCTTC
CAAAAGTTGCTTCACCCGTCGAGGCAGACGGGGTTGTCCTTCCCTGGCTGCAATGGGAAA
CAAGCAACGACCTTCAAACCTCTCCATGCAAACCAAAGACACAGGGAGCAAGTACCGCAT
GCAGCACCAGCAGTCGCACTATGAGCAGCCGCGGGAGTTGGAGTCCTGGAGATCATGATA
GCGCAGCTGGCTCCAAGGATACACTTCTGACAAGGTTCGAGGAGGCTGCGTCTCGCCGAA
GCAGCTGCCCCGATAACACTCAAAGATCGTCATTTCACATCGATGACTACATGCATTTGC
GGAGGAGCCACGATCTTCTCTTGGAGCGATGGAGGCAAAAGGAAAGAATTGGCGACGGTG
GCCTTATCCTGTGCAGTAGATCATCAATAATGTAGGTTATGGCCCATGGTTCATATGTAG
AAGCAGATGATTAGCATATCAAAAACAATGTAGCCATTATTCATCTGTGTGCTTACCCAT
TAGGTTGTTGGTTGTGATGAGCTAAGGCCAAAAGTGTGTACATTTGCAAACTTGACATAA
TTACTTCATGGACCTGTGGTGCTTAGCTAAAAAAAAAAAAGAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11837#0      AACCCTCTTTGCTCTCTGCTCCGGTCGCCGGCGGCGATGGCGGCGGCGGCGGTGGGGGCG 60
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      TACCGGTCGGCGGGGAGGAGGAGGGACGCCTTCGCGGCGGCGGCGGAGGACGCCGGCTCC 120
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      GCCACCACGCGCGGGCGGGCCGCGGCCGCCGGGGGAAGCGGCGGGCTGCTCCGGCGGTCG 180
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      AGGAGCCTGAGTAGGTTCCCGCCGCCATCGCCCTCCCCGGAGGACGCGGCCACGCCCTCC 240
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      TCGAGGTTCGTCAACAAGGTCAGGGGCGGCGGCCGGGGCGGAGCGGGGTTGCCGCCGGAG 300
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      ATCAGCCTCGATGACCTCGCCGACGAGTTCTTCCGGGCCAGGGCGGAGTCCGAGGACGAC 360
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      GACGACGACGAGGAGGCGGTGGTGGTCGTGCGCGGGGAGGAGTCGCGTGGGCGGCTCAGG 420
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      TTCCCGGCGCCAGCGGAGAAGGGCGGCGGTCGGCGGAGCTCCACCGCGCGGTACGCCAGG 480
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      GAGACGGAGTCGTCGCGGCAGCGCGGGAGGTCGGTGTCGCGGCCGCCGGCCGAGAGGCGA 540
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      GGCGGAGCCACTGCTGTCGCCAATGGCGGGGCTGCTGCCGCGGGGCGGCAGCGGTATGCA 600
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      TCCGTCGACCGGCGCGCTTCGATGGATCGGCACCGATGGTGTGATTCGGATAATGATATG 660
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      GACATTTCTCACCGGTATGGTTCTAGGGGAATAAATACCAAATCCAGCAATAATAGCCTG 720
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      CAGAACTCATCATTCCATAAGACGGCTAAAGTAAATCAATCGTTGAGGAAGTCTACAAGT 780
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      CAAAAAGATTTCTTACATTCACGAGACAGCAGCTCAAGCCATTCTTCAATAACTGATGAT 840
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      GAATTTCGGGACTCTTTTCATAGCAGAAGTCAGAAGGGGATTCGGGCAGTTTATACCCTT 900
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      GAAAAGGACCGCCTGAGTAATAATGAGGATGAAAATGCACTGTATGACGTGATGCGTAAA 960
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      GAAGTCCGGCAAGCTGTTGATGAAATCAGGACTCAGCTTGAAAAGGTCGTGACAAAATCT 1020
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      GAACCTTCAGAAAAAGCAACAAGCGCTGATGCACAACCAACTCAGGTTATTAATGAGCTC 1080
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      CGCAGGAGTTACACTAGCAAGTTGGAAGAGTCAGAGATGCGGAAACAGGAATTGTTAGCT 1140
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      CAATTGGCAGCGGAAGAACAACGTGGGCATGAACTCACAAAAATAGTCAAGGAATTGCTA 1200
consensus_11837#1      ------------------------------------------------------------
                                                                                   

consensus_11837#0      CCTACTCCTAAGAAGAATATGAATTCGGAAAGGCAACCACGATATAGAAGAAGAAGCAAT 1260
consensus_11837#1      -------------------------------------------------------GCAAT 5
                                                                              *****

consensus_11837#0      GATAGAGCCAGGGTGTCAAGACGTCTTACTGAAGAGGCTGAGCAATACTTCGAAGATTTC 1320
consensus_11837#1      GATAGAGCCAGGGTGTCAAGACGTTTTACTGAAGAGGGTGAGCAATACTTCGAAGATTTC 65
                       ************************ ************ **********************

consensus_11837#0      CTGTCAAATGTTGAAGATACTGATTTTTCATCTTTTGATGGAGAAAGAAGTGATACAAGT 1380
consensus_11837#1      CTGTCAAATGTTGAAGATACTGATTTTTCATCTTTTGATGGAGAAAGAAGTGATACAAGT 125
                       ************************************************************

consensus_11837#0      TCAAGCAGAAGAGATGTGGTACAAAACACCAAGATCGAAACTCCAATAACGCTTCCAAAA 1440
consensus_11837#1      TCAAGCAGAAGAGATGTGGTACAAAACACCAAGATCGAAACTCCAATAACGCTTCCAAAA 185
                       ************************************************************

consensus_11837#0      GTTGCTTCACCCGTCGAGGCAGACGGGGTTGTCCTTCCCTGGCTGCAATGGGAAACAAGC 1500
consensus_11837#1      GTTGCTTCACCCGTCGAGGCAGACGGGGTTGTCCTTCCCTGGCTGCAATGGGAAACAAGC 245
                       ************************************************************

consensus_11837#0      AACGACCTTCAAACCTCTCCATGCAAACCAAAGACACAGGGAGCAAGTACCGCATGCAGC 1560
consensus_11837#1      AACGACCTTCAAACCTCTCCATGCAAACCAAAGACACAGGGAGCAAGTACCGCATGCAGC 305
                       ************************************************************

consensus_11837#0      ACCAGCAGTCGCACTATGAGCAGCCGCGGGAGTTGGAGTCCTGGAGATCATGATAGCGCA 1620
consensus_11837#1      ACCAGCAGTCGCACTATGAGCAGCCGCGGGAGTTGGAGTCCTGGAGATCATGATAGCGCA 365
                       ************************************************************

consensus_11837#0      GCTGGCTCCAAGGATACACTTCTGACAAGGTTCGAGGAGGCTGCGTCTCGCCGAAGCAGC 1680
consensus_11837#1      GCTGGCTCCAAGGATACACTTCTGACAAGGTTCGAGGAGGCTGCGTCTCGCCGAAGCAGC 425
                       ************************************************************

consensus_11837#0      TGCCCCGATAACACTCAAAGATCGTCATTTCACATCGATGACTACATGCATTTGCGGAGG 1740
consensus_11837#1      TGCCCCGATAACACTCAAAGATCGTCATTTCACATCGATGACTACATGCATTTGCGGAGG 485
                       ************************************************************

consensus_11837#0      AGCCACGATCTTCTCTTGGAGCGATGGAGGCAAAAGGAAAGAATTGGCGACGGTGGCCTT 1800
consensus_11837#1      AGCCACGATCTTCTCTTGGAGCGATGGAGGCAAAAGGAAAGAATTGGCGACGGTGGCCTT 545
                       ************************************************************

consensus_11837#0      ATCCTGTGCAGTAGATCATCAATAATGTAGGTTATGGCCCATGGTTCATATGTAGAAGCA 1860
consensus_11837#1      ATCCTGTGCAGTAGATCATCAATAATGTAGGTTATGGCCCATGGTTCATATGTAGAAGCA 605
                       ************************************************************

consensus_11837#0      GATGATTAGCATATCAAAAACAATGTAGCCATTATTCATCTGTGTGCTTACCCATTAGGT 1920
consensus_11837#1      GATGATTAGCATATCAAAAACAATGTAGCCATTATTCATCTGTGTGCTTACCCATTAGGT 665
                       ************************************************************

consensus_11837#0      TGTTGGTTGTGATGAGCTAAGGCCAAAAGTGTGTACATTTGCAAACTTGACATAATTACT 1980
consensus_11837#1      TGTTGGTTGTGATGAGCTAAGGCCAAAAGTGTGTACATTTGCAAACTTGACATAATTACT 725
                       ************************************************************

consensus_11837#0      TCATGGACCTGTGGTGCTTAGCTATATTCTAAATTTGTATAGACGTTTGCTTTTAACTTA 2040
consensus_11837#1      TCATGGACCTGTGGTGCTTAGCTAAAAAAAAAAAAGAAAAAA------------------ 767
                       ************************ *    ***     * *                   

consensus_11837#0      GTCCTAAATTTGTTTACCAACCTCAGCCATAAAGATATACGA 2082
consensus_11837#1      ------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)