These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 762 fasta sequence [AACCAGCTCCATCCATAGACTTGTTGACTGCTCCCTCGCGATCCCATCTCCGCCGCCGCCGCCGCCGCCGCCGAGCGAGATGAGGAAGACGAAGCCGTCGAAGCAGTCGCGCGCGCAGGCGCAGCA-GAACGGCGGCGCCGGA-CACTCCAAGCTCGCCAGGTACTTCGACCCGGAGGCCTCCTGGGACAAGGATCAACTGCTGGACGCCGTGCACTGGATCCGGCAGGTGCTCGGCCTCGCCTGCGGCCTGCTCTGGGGAGCCGTCCCCCTCGTC-GGCGCCATCTGGATCGCACTGTTTGTGACTATTTCTACT-GGGCTCGTTTACTGGTACTAT-GCATACCTGTTGAAGATTGATGAGGAAGACTTTGGAGGCCATGGAGCACTACTTCAGGAGGGAATGTTTGCCTCTTTCACTCTTTTCCTGCTTTCATGGACACTCATATACAGTTTGGTTCACTTTTGAGAAGCTCCTCTGATGACATGTTGCCCATGGATGGAAGTTTGTGCACCATGTTTGGTCAGGAAGGAATCA-CCAGAACAGTGTAGATTAAGGGGGCCATTTAGAGCAAACTTTGTATTATGAAAACCGTTAAAGGCAGTAATGTTGTTTCCTTTCAGAGTCCCAATGTAATTTTGATAGTATGGTTTTAACTCAATGAGGTAGAACATTGCTTGTCTGAAAAACGTGCTTACCGAGTTAGAACATTTGTACTGTATCATTCAATTGCATCCAGCCAAT-AGCCTTTCTAACAAAAAAAAAAA] [+] EMBL AK121048 [AACCAGCTCCATCCATAGACTTGTTGACTGCTCCCTCGCGATCCCATCTCCGCCGCCGCCGCCGCCGCCGCCGAGCGAGATGAGGAAGACGAAGCCGTCGAAGCAGTCGCGCGCGCAGGCGCAGCA GAACGGCGGCGCCGGA CACTCCAAGCTCGCCAGGTACTTCGACCCGGAGGCCTCCTGGGACAAGGATCAACTGCTGGACGCCGTGCACTGGATCCGGCAGGTGCTCGGCCTCGCCTGCGGCCTGCTCTGGGGAGCCGTCCCCCTCGTC GGCGCCATCTGGATCGCACTGTTTGTGACTATTTCTACT GGGCTCGTTTACTGGTACTAT GCATACCTGTTGAAGATTGATGAGGAAGACTTTGGAGGCCATGGAGCACTACTTCAGGAGGGAATGTTTGCCTCTTTCACTCTTTTCCTGCTTTCATGGACACTCATATACAGTTTGGTTCACTTTTGAGAAGCTCCTCTGATGACATGTTGCCCATGGATGGAAGTTTGTGCACCATGTTTGGTCAGGAAGGAATCA CCAGAACAGTGTAGATTAAGGGGGCCATTTAGAGCAAACTTTGTATTATGAAAACCGTTAAAGGCAGTAATGTTGTTTCCTTTCAGAGTCCCAATGTAATTTTGATAGTATGGTTTTAACTCAATGAGGTAGAACATTGCTTGTCTGAAAAACGTGCTTACCGAGTTAGAACATTTGTACTGTATCATTCAATTGCATCCAGCCAAT ] [+] EMBL AU068975 [ CCATAGACTTGTTGACTGCTCCCTCGCGATCCCATCTCCGCCGCCGCCGCCGCCGCCGCCGAGCGAGATGAGGAAGACGAAGCCGTCGAAGCAGTCGCGCGCGCAGGC NAGCA GAACGGCGGCGCCGGA CACTCCAAGCTCGCCAGGTACTTCGACCCGGAGGCCTCCTGGGACAAGGATCAACTGCTGGACGCCGTGCACTGGATCCGGCAGGTGCTCGGCCTCGCCTGCNGCCTGCTCTNGGGAACCGTCCCCCTCGTC GGCGCCATCTNGATCGCACTGTTTGTGACTATTTCTACTGGGGCTCGTTTAC ] [-] EMBL CB680514 [ CCATCTCCGCCGCCGCCGCCGCCGCCGCCGAGCGAGATGAGGAAGACGAAGCCGTCGAAGCAGTCGCGCGCGCAGGCGCAGCA GAACGGCGGCGCCGGA CACTCCAAGCTCGCCAGGTACTTCGACCCGGAGGCCTCCTGGGACAAGGATCAACTGCTGGACGCCGTGCACTGGATCCGGCAGGTGCTCGGCCTCGCCTGCGGCCTGCTCTGGGGAGCCGTCCCCCTCGTC GGCGCCATCTGGATCGCACTGTTTGTGACTATTTCTACT GGGCTCGTTTACTGGTACTAT GCATACCTGTTGAAGATTGATGAGGAAGACTTTGGAGGCCATGGAGCACTACTTCAGGAGGGAATGTTTGCCTCTTTCACTCTTTTCCTGCTTTCATGGACACTCATATACAGTTTGGTTCACTTTTGAGAAGCTCCTCTGATGACATGTTGCCCATGGATGGAAGTTTGTGCACCATGTTTGGTCAGGAAGGAATCA CCAGAACAGTGTAGATTAAGGGGGCCATTTAGAGCAAACTTTGTATTATGAAAACCGTTAAAGGCAGTAATGTTGTTTCCTTTCAGAGTCCCAATGTAATTTTGATAGTATGGGGTTAACTCAATGAGGTAGAACATTGCTTGTCTG ] [+] EMBL OSR28081A [ CTCCGCCGCCGCCGCCGCCGCCGCCGAGCGAGATGAGGAAGACGAAGCCGTCGAAGCAGTCGCGCGCGCAGGC NAGCAGGAACGGCGGCGCCGGANCACTCCAAGCTCGCCAGGTACTTCGACCCGGAGGCCTCCTGGGACAAGGATCAACTGCTGGACGCCGTGCACTGGATCCGGCAGGTGCTCGGCCTCGCCTGCGGACTGCTCTGGGGAGCCGTCCCCCTCGTCGGGCGCCATCTGGATCGCACTGTTTGTGACTATTTCTACT GGGCTCGTTTACTGGTACTATGGNATACCTGTTGAAGATTGATGAGGAAGACTTTGGAGGCCATGGAGg ] [+] EMBL CB680513 [ GCCGCCGCCGCCGCCGCCGCCGAGCGAGATGAGGAAGACGAAGCCGTCGAAGCAGTCGCGCGCGCAGGCGCAGCA GAACGCCGGCGCCGGA CACTCCAAGCTCGCCAGGTACTTCGACCCGGAGGCCTCCTGGGACAAGGATCAACTGCTGGACGCCGTGCACTGGATCCGGCAGGTGCTCGGCCTCGCCTGCGGCCTGCTCTGGGGAGCCGTCCCCCTCGTC GGCGCCATCTGGATCGCACTGTTTGTGACTATTTCTACT GGGCTCGTTTACTGGTACTAT GCATACCTGTTGAAGATTGATGAGGAAGACTTTGGAGGCCATGGAGCACTACTTCAGGAGGGAATGTTTGCCTCTTTCACTCTTTTCCTGCTTTCATGGACACTCATATACAGTTTGGTTCACTTTTGAGAAGCTCCTCTGATGACATGTTGCCCATGGATGGAAGTTTGTGCACCATGTTTGGTCAGGAAGGAATCA CCAGAACAGTGTAGATTAAGGGGGCCATTTAGAGCAAACTTTGTATTATGAAAACCGTTAAAGGCAGTAATGTTGTTTCCTTTCAGAGTCCCAATGTAATTTTGATAGTATGGTTTTAACTCAATGAGGTAGAACAT ] [+] EMBL CB000689 [ ACT GGGCTCGTTTACTGGTACTAT GCATACCTGTTGAAGATTGATGAGGAAGACTTTGGAGGCCATGGAGCACTACTTCAGGAGGGAATGTTTGCCTCTTTCACTCTTTTCCTGCTTTCATGGACACTCATATACAGTTTGGTTCACTTTTGGGAAGCTCCTCTGATGACATGTTGCCCATGGATGGAAGTTTGTGCACCATGTTTGGTCAGGAAGGAATCA CCAGAACAGTGTAGATTAAGGGGGCCATTTAGAGCAAACTTTGTATTATGAAAACCGTTAAAGGCAGTAATG ] [+] EMBL BI803957 [ TTTCACTCTTTTCCTGCTTTCATGGACACTCATATACAGTTTGGTTCACTTTTGAGAAGCTCCTCTGATGACATGTTGCCCATGGATGGAAGTTTGTGCACCATGTTTGGTCAGGAAGGAATCACCCAGAACAGTGTAGATTAAGGGGGCCATTTAGAGC AACTTTGTATTATGAAAACCGTTAAAGGCAGTAATGTTGTTTCCTTTCAGAGTCCCAATGTAATTTTGATAGTATGGTTTTAACTCAATGAGGTAGAACATTGCTTGTCTGAAAAACGTGCTTACCGAGTTAGAACATTTGTACTGTAaaaaaa ] [+] EMBL AU162334 [ TATACAGTTTGGTTCACTTTTGAGAAGCTCCTCTGATGACATGTTGCCCATGGATGGAAGTTTGTGCACCATGTTTGGTCAGGAAGGAATCA CCAGAACAGTGTAGATTAAGGGGGCCATTTAGAGCAAACTTTGTATTATGAAAACCGTTAAAGGCAGTAATGTTGTTTCCTTTCAGAGTCCCAATGTAATTTTGATAGTATGGNTTTAACTCAATGAGGNAGAACATTGCTTGTCTGAAAAACGTGCTTACCGAGTTAGAACATTTGTACTGTATCATTCAATTGCNTCCAGCCAATAAGCCTTTCTAACAAAAAAAAAAA] [+] EMBL BI796609 [ TGCACCATGTTTGGTCAGGAAGGAATCA CCAGAACAGTGTAGATTAA GGGGCCATTTAGAGCAAACTTTGTATTATGAAAACCGTTAAA GCAGTAATGTTGTTTCCTTTCAGAGTCCCAATGTAATTTTGATAGTATGGTTTTAACTCAATGAGGTAGAACATTGCTTGTCTGAAAAACGTGCTTACCGAGTTAGAACATTTGTACTGTATCATTCAATTGCATCCAGCCATA AGCCTTTCTAACAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||