These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2101 fasta sequence [GCCTCCTCCCATCATTCGATCACTCCTCCTCCTCCCTCCTCTCTCCCTCCCTCCGCGACCCAACAAGGAAGACGACGAAGAGGAGGAGAGAGAAGAGGAGGAGGAGGAGGAAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGATTCGATTCCTTTCGTCCGGCGCGGCCAACCCGAAAGGCTGCGGCCGTCGCAGTCCAATCGATTCCCCCCCTGCGCTGCGCTGCGCTTTCCCACCCCTCGAAGCCGAATCCGATGGTTCCTCCACCCGTTGACCGCCTCCGCCATCGGAGGCCGCGCCGCGCCCTCGAACCCCGCGCCGCCTGCTGCTGCCTCCGCCGCCTCCGCCTCCTATAGATACCGCCCCGGCTCACCGCGGCCCGGCCCTCCCGAATGGCGGTCGGCGGCGACGACGACATGGAGAGGGACTTCGCCGCCAGGCTCCGCCTCGCGCCCTCCCCCGCCTCCCCGAACGCCGCCGCCGGAGGTGGCGGTGGCGGGATCGCCTTCCGCGCGCCGCAGGAGCAGTTCACCGTCGGCGACTTCGAGCTTGGCAAGATCTACGGCGTCGGCTCCTACTCCAAGGTGGTGAGGGCCAAGAAGAAGGATACGGGGAATGTGTACGCGCTCAAGATCATGGACAAGAAGTTCATCACCAAGGAGAACAAGATCTCCTACGTCAAGATGGAGCGCATCGTGCTCGATCAGCTGGATCACCCGGGCGTCATCAGGCTCTTCTTCACCTTCCAGGACACCTACTCCCTCTATATGGCGCTTGAGTCGTGTGAAGGTGGGGAGCTGTTTGACCAAATTGTTCGGAAAGGTCGCCTGTCTGAGGATGAGGCCCGGTTTTATGCTGCTGAAATTGTTGATATTCTGGAGTATTTGCATAGTTTAGGCCTAATTCATCGGGATGTTAAGCCAGAAAATTTACTGCTTACTTCTGATGGGCACATCAAGATTGCCGATTTTGGTAGTGTGAAGCCTACAAAGGACACCCCGATCAAAGTCCTTCCAAATTCCACTAACGAGAGGGCCTGTACATTTGTTGGGACAGCTGCATATGTACCACCTGAGGTCCTGAACTCTGCCCCACCAACCTTTGGAAATGACTTATGGGCATTGGGGTGTACTCTATATCAATTGCTTTCTGGCTCTTCACCATTTAAAGATGCCAGTGAGTGGTTAATTTTCCAGAGAATTATAGCACGCGATCTCAAAATTCCTGAGTACTTCTCAGATGATGCAAGGGATCTCATTGACAAGCTGCTGGATGTCGACCCAAGCAAACGTCCAGGTGCAGGACCTGATGGTTATGTGTCATTGAAGAAACATCCTTTTTTTAGAGGCATTGATTGGAAAAATATAAGGAGCACACGGGCACCGAAGCTTGCAATGGAGGCAAATGCAAATGAGGATGAAGATAGTCAGGATTCAAGTTGGTTGTCACACATGGGAAGTGCTCCAGTCAACCAACATGTCAGTCCTGTTGGGAATGATGGTGCCTCATCATCTTCTGAAGTACGCTCCCATATATCTAGATTAGCTTCCATCGACTCCTTCGACTCTAGATGGCAGGACTTCCTGGAGCCTGGCGAATCTGTCGTTCTAATATCAAAACTGAAGAAGATAAACAAGCTAACGAACAAGAAGGTTCAGTTGATCCTCACCGACAAACCACAGCTGATCTGTGTAGATCCTGGAAAAATGGTGACTAAAGGGAACATCATGTGGTCTGATGA-CCCAAGTGAACTCAATGTGCAAGTATCAAACTCTTCGCATTTCAGGATATGCACGCCAAAGAAGGTGTCATCGTTTGAGGATGCAAAACAGCGCGCCTGGCA-ATGGAAGAAGGCGATCGAAGACCTACAACGCTGCCAGAAGAACTGACCATGACCAACTCAAGACGTCAAAATGGTGATATTAAGCATTGTGTATACACCATAGCCATCCTTTTCGCCTGGAGGAACATGGGGGAGACTATTGTTCCTGGTCTCCTGCATCTGTGCCCGATTGCAACGAAGTCTCAACAGTTGGCACATCGATGGATGTTCCTACATTTTTTTGTTTTCTTTTCCGGCCCTGCTAAATTCTCTTAT] [+] EMBL AK073712 [GCCTCCTCCCATCATTCGATCACTCCTCCTCCTCCCTCCTCTCTCCCTCCCTCCGCGACCCAACAAGGAAGACGACGAAGAGGAGGAGAGAGAAGAGGAGGAGGAGGAGGAAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGATTCGATTCCTTTCGTCCGGCGCGGCCAACCCGAAAGGCTGCGGCCGTCGCAGTCCAATCGATTCCCCCCCTGCGCTGCGCTGCGCTTTCCCACCCCTCGAAGCCGAATCCGATGGTTCCTCCACCCGTTGACCGCCTCCGCCATCGGAGGCCGCGCCGCGCCCTCGAACCCCGCGCCGCCTGCTGCTGCCTCCGCCGCCTCCGCCTCCTATAGATACCGCCCCGGCTCACCGCGGCCCGGCCCTCCCGAATGGCGGTCGGCGGCGACGACGACATGGAGAGGGACTTCGCCGCCAGGCTCCGCCTCGCGCCCTCCCCCGCCTCCCCGAACGCCGCCGCCGGAGGTGGCGGTGGCGGGATCGCCTTCCGCGCGCCGCAGGAGCAGTTCACCGTCGGCGACTTCGAGCTTGGCAAGATCTACGGCGTCGGCTCCTACTCCAAGGTGGTGAGGGCCAAGAAGAAGGATACGGGGAATGTGTACGCGCTCAAGATCATGGACAAGAAGTTCATCACCAAGGAGAACAAGATCTCCTACGTCAAGATGGAGCGCATCGTGCTCGATCAGCTGGATCACCCGGGCGTCATCAGGCTCTTCTTCACCTTCCAGGACACCTACTCCCTCTATATGGCGCTTGAGTCGTGTGAAGGTGGGGAGCTGTTTGACCAAATTGTTCGGAAAGGTCGCCTGTCTGAGGATGAGGCCCGGTTTTATGCTGCTGAAATTGTTGATATTCTGGAGTATTTGCATAGTTTAGGCCTAATTCATCGGGATGTTAAGCCAGAAAATTTACTGCTTACTTCTGATGGGCACATCAAGATTGCCGATTCTGGTAGTGTGAAGCCTACAAAGGACACCCCGATCAAAGTCCTTCCAAATTCCACTAACGAGAGGGCCTGTACATTTGTTGGGACAGCTGCATATGTACCACCTGAGGTCCTGAACTCTGCCCCACCAACCTTTGGGAATGACTTATGGGCATTGGGGTGTACTCTATATCAATTGCTTTCTGGCTCTTCACCATTTAAAGATGCCAGTGAGTGGTTAATTTTCCAGAGAATTATAGCACGCGATCTCAGAATTCCTGAGTACTTCTCAGATGATGCAAGGGATCTCATTGACAAGCTGCTGGATGTCGACCCAAGCAAACGTCCAGGTGCAGGACCTGATGGTTATGTGTCATTGAAGAAACATCCTTTTTTTAGAGGCATTGATTGGAAAAATATAAGGAGCACACGGGCACCGAAGCTTGCAATGGAGGCAAATGCAAATGAGGATGAAGATAGTCAGGATTCAAGTTGGTTGTCACACATGGGAAGTGCTCCAGTCAACCAACATGTCAGTCCTGTTGGGAATGATGGTGCCTCATCATCTTCTGAAGTACGCTCCCATATATCTAGATTAGCTTCCATCGACTCCTTCGACTCTAGATGGCAGGACTTCCTGGAGCCTGGCGAATCTGTCGTTCTAATATCAAAACTGAAGAAGATAAACAAGCTAACGAACAAGAAGGTTCAGTTGATCCTCACCGACAAACCACAGCTGATCTGTGTAGATCCTGGAAAAATGGTGACTAAAGGGAACATCATGTGGTCTGATGA CCCAAGTGAACTCAATGTGCAAGTATCAAACTCTTCGCATTTCAGGATATGCACGCCAAAGAAGGTGTCATCGTTTGAGGATGCAAAACAGCGCGCCTGGCA ATGGAAGAAGGCGATCGAAGACCTACAACGCTGCCAGAAGAACTGACCATGACCAACTCAAGACGTCAAAATGGTGATATTAAGCATTGTGTATACACCATAGCCATCCTTTTCGCCTGGAGGAACATGGGGGAGACTATTGTTCCTGGTCTCCTGCATCTGTGCCCGATTGCAACGAAGTCTCAACAGTTGGCACATCGATGGATGTTCCTACATTTTTTTGTTTTCTTTTCCGGCCCTGCTAAATTCTCTTA ] [+] EMBL CB629660 [ gagcgcAGGAGGAGGAAAAG CTCTCTCTCTCTCTCTCTCTAGATTCGATTCCTTTCGTCCGGCGCGGCCAACCCGAAAGGCTGCGGCCGTCGCAGTCCAATCGATTCCCCCCCTGCGCTGCGCTGCGCTTTCCCACCCCTCGAAGCCGAATCCGATGGTTCCTCCACCCGTTGACCGCCTCCGCCATCGGAGGCCGCGCCGCGCCCTCGAACCCCGCGCCGCCTGCTGCTGCCTCCGCCGCCTCCGCCTCCTATAGATACCGCCCCGGCTCACCGCGGCCCGGCCCTCCCGAATGGCGGTCGGCGGCGACGACGACATGGAGAGGGACTTCGCCGCCAGGCTCCGCCTCGCGCCCTCCCCCGCCTCCCCGACCACCGCCGCCGGAGGTGGCGGTGGCGGGATCGCCTTCCGCGCGCCGCAGGAGCAGTTCACCGTCGGCGACTTCGAGCTTGGCAAGATCTACGGCGTCGGCTCCTACTCCAAGGTGGTGAGGGCCAAGAAGAAGGATACGGGGAATGTGTACGCGCTCAAGATCATGGACAAGAAGTTCATCACCAAGGAGAACAAGATCTCCTACGTCAAGATGGAGCGCATCGTGCTCGATCAGCTGGATCACCCGGGCGTCATCAGGCTCTTCTTCACCTTCCAGGACACCTACTCCCTCTATATGGCGCTTGAGTCGTGTGAAGGTGGGGAGCTGTTTGACCAAATTGTTCGGAAAGGTCGCCTGTCTGAGGATGAGGCCCGGTTTTATGCTGCTGAAATTG ] [+] EMBL AK062100 [ TCCTACTCCAAGGTGGTGAGGGCCAAGAAGAAGGATACGGGGAATGTGTACGCGCTCAAGATCATGGACAAGAAGTTCATCACCAAGGAGAACAAGATCTCCTACGTCAAGATGGAGCGCATCGTGCTCGATCAGCTGGATCACCCGGGCGTCATCAGGCTCTTCTTCACCTTCCAGGACACCTACTCCCTCTATATGGCGCTTGAGTCGTGTGAAGGTGGGGAGCTGTTTGACCAAATTGTTCGGAAAGGTCGCCTGTCTGAGGATGAGGCCCGGTTTTATGCTGCTGAAATTGTTGATATTCTGGAGTATTTGCATAGTTTAGGCCTAATTCATCGGGATGTTAAGCCAGAAAATTTACTGCTTACTTCTGATGGGCACATCAAGATTGCCGATTTTGGTAGTGTGAAGCCTACAAAGGACACCCCGATCAAAGTCCTTCCAAATTCCACTAACGAGAGGGCCTGTACATTTGTTGGGACAGCTGCATATGTACCACCTGAGGTCCTGAACTCTGCCCCACCAACCTTTGGAAATGACTTATGGGCATTGGGGTGTACTCTATATCAATTGCTTTCTGGCTCTTCACCATTTAAAGATGCCAGTGAGTGGTTAATTTTCCAGAGAATTATAGCACGCGATCTCAAAATTCCTGAGTACTTCTCAGATGATGCAAGGGATCTCATTGACAAGCTGCTGGATGTCGACCCAAGCAAACGTCCAGGTGCAGGACCTGATGGTTATGTGTCATTGAAGAAACATCCTTTTTTTAGAGGCATTGATTGGAAAAATATAAGGAGCACACGGGCACCGAAGCTTGCAATGGAGGCAAATGCAAATGAGGATGAAGATAGTCAGGATTCAAGTTGGTTGTCACACATGGGAAGTGCTCCAGTCAACCAACATGTCAGTCCTGTTGGGAATGATGGTGCCTCATCATCTTCTGAAGTACGCTCCCATATATCTAGATTAGCTTCCATCGACTCCTTCGACTCTAGATGGCAGGACTTCCTGGAGCCTGGCGAATCTGTCGTTCTAATATCAAAACTGAAGAAGATAAACAAGCTAACGAACAAGAAGGTTCAGTTGATCCTCACCGACAAACCACAGCTGATCTGTGTAGATCCTGGAAAAATGGTGACTAAAGGGAACATCATGTGGTCTGATGA CCCAAGTGAACTCAATGTGCAAGTATCAAACTCTTCGCATTTCAGGATATGCACGCCAAAGAAGGTGTCATCGTTTGAGGATGCAAAACAGCGCGCCTGGCA ATGGAAGAAGGCGATCGAAGACCTACAACGCTGCCAGAAGAACTGACCATGACCAACTCAAGACGTCAAAATGGTGATATTAAGCATTGTGTATACACCATAGCCATCCTTTTCGCCTGGAGGAACATGGGGGAGACTATTGTTCCTGGTCTCCTGCATCTGTGCCCGATTGCAACGAAGTCTCAACAGTTGGCACATCGATGGATGTTCCTACATTTTTTTGTTTTCTTTTCCGGCCCTGCTAAATTCTCTTA ] [+] EMBL AF132743 [ TATGCTGCTGAAATTGTTGATATTCTGGAGTATTTGCATAGTTTAGGCCTAATTCATCGGGATGTTAAGCCAGAAAATTTACTGCTTACTTCTGATGGGCACATCAAGATTGCCGATTTTGGTAGTGTGAAGCCTACAAAGGACACCCCGATCAAAGTCCTTCCAAATTCCACTAACGAGAGGGCCTGTACATTTGTTGGGACAGCTGCATATGTACCACCTGAGGTCCTGAACTCTGCCCCACCAACCTTTGGAAATGACTTATGGGCATTGGGGTGTACTCTATATCAATTGCTTTCTGGCTCTTCACCATTTAAAGATGCCAGTGAGTGGTTAATTTTCCAGAGAATTATAGCACGCGATCTCAAAATTCCTGAGTACTTCTCAGATGATGCAAGGGATCTCATTGACAAGCTGCTGGATGTCGACCCAAGCAAACGTCCAGGTGCAGGACCTGATGGTTATGTGTCATTGAAGAAACATCCTTTTTTTAGAGGCATTGATTGGAAAAATATAAGGAGCACACGGGCACCGAAGCTTGCAATGGAGGCAAATGCAAATGAGGATGAAGATAGTCAGGATTCAAGTTGGTTGTCACACATGGGAAGTGCTCCAGTCAACCAACATGTCAGTCCTGTTGGGAATGATGGTGCCTCATCATCTTCTGAAGTACGCTCCCATATATCTAGATTAGCTTCCATCGACTCCTTCGACTCTAGATGGCAGGACTTCCTGGAGCCTGGCGAATCTGTCGTTCTAATATCAAAACTGAAGAAGATAAACAAGCTAACGAACAAGAAGGTTCAGTTGATCCTCACCGACAAACCACAGCTGATCTGTGTAGATCCTGGAAAAATGGTGACTAAAGGGAACATCATGTGGTCTGATGA CCCAAGTGAACTCAATGTGCAAGTATCAAACTCTTCGCATTTCAGGATATGCACGCCAAAGAAGGTGTCATCGTTTGAGGATGCAAAACAGCGCGCCTGGCA ATGGAAGAAGGCGATCGAAGACCTACAACGCTGCCAGAAGAACTGACCATGACCAACTCAAGACGTCAAAATGGTGATATTAAGCATTGTGTATACACCATAGCCATCCTTTTCGCCTGGAGGAACATGGGGGAGACTATTGTTCCTGGTCTCCTGCATCTGTGCCCGATTGCAACGAAGTCTCAACAGTTGGCACATCGATGGATGTTCCTACATTTTTTTGTTTTCTTTTCCGGCCCTGCTAAATTCTCTTA ] [+] EMBL OSS3027A [ ATGCTGCTGAAATTGTTGATATTCTGGAGTATTTGCATAGTTTAGGCCTAATTCATCGGGATGTTAAGCCAGAAAATTTACTGCTTACTTCTGATGGGCACATCAAGATTGCCGATTTTGGTAGTGTGAAGCCTACAAAGGACACCCCGATCAAAGTCCTTCCAAATTCCACTAACGAGAGGGCCTGTACATTTGTTGGGACAGCTGCATATGTACCACCTGAGGTCCTGAACTCTGCCCCACCAACCTTTGGAAATGACTTATGGGCATTGGGGTGTACTCTATATCAATTGCTTTCTGGCTC ] [-] EMBL CB629661 [ GTCCTGTTGGGAATGATGGTGCCTCATCATCTTCTGAAGTACGCTCCCATATATCTAGATTAGCTTCCATCGACTCCTTCGACTCTAGATGGCAGGACTTCCTGGAGCCTGGCGAATCTGTCGTTCTAATATCAAAACTGAAGAAGATAACCAAGCTAACGACCAAGAAGGTTCAGTTGATCCTCACCGACAAACCACAGCTGATCTGTGTAGATCCTGGAAAAATGGTGACTAAAGGGAACATCATGTGGTCTGATGA CCCAAGTGAACTCAATGTGCAAGTATCAAACTCTTCGCATTTCAGGATATGCACGCCAAAGAAGGTGTCATCGTTTGAGGATGCAAAACAGCGCGCCTGGCA ATGGAAGAAGGCGATCGAAGACCTACAACGCTGCCAGAAGAACTGCCCATGACCAACTCAAGACGTCAAAATGGTGATATTAAGCATTGTGTATACACCATAGCCATCCTTTTCGCCTGGAGGAACATGGGGGAGACTATTGTTCCTGGTCTCCTGCATCTGTGCCCGATTGCAACGAAGTCTCACCAGTTGGCACATCGATGGATGTTCCTACATTTTTTTGTTTTCTTTTCCGGCCCTGCTAAATTTTCTTAT] [+] EMBL BI808338 [ CTGTGTAGATCCTGGAAAAATGGTGACTAAAGGGAACATCATGTGGTCTGATGACCCCAAGTGAACTCAATGTGCAAGTATC AACTCTTCGCATTTCAGGATATGCACGCCCAAGAAGGTGTCATCGTTTGAGGATGCCAAACAGCGCGCCTGGCACATGGAAGAAGGCGATCGAAGACCTAC ACGCTGCCAGAAGAACTGACCATGACCAACTCAAGACGTC AAATGGTGATATTAAGCATTGTGTATACACCATAGCCATCCTTTTCGCCTGGAGGAACATGGGGGAGACTATTGTTCCTGGTCTCCTGCATCTGTGCCCGATTGCAACGAAGTCTC ACAGTTGGCACATCGATGGATGTTCCTACATTTTTTTGTTTTCTTTTCCGGCCCTGCTAAATTCTCTTA ] [+] EMBL C22679 [ AACTCTTCGCATTTCAGGATATGCACGCCAAAGAAGGTGTCATCGTTTGNTGATGCAAAACAGCGCGCCTGGCA ATGGAAGAAGGCGATCGAAGACCTACAACGCTGCCAGAAGAACTGACCATGACCAACTCAAGACGTCAAAATGGTGATATTAAGCATTGTGTATACACCATAGCCATCCTTTTCGCCTGGAGGAACATGGGGGAGACTATTGTTCCTGGTCTCCTGCATCTGTGCCCGATTGCAACGAAGTCTCAACAGTTGGCACATCGATGGATGTTCCTACATTTTTTTGTTTTCTTTTCCGGCCCTGCTAAATTCTCTTA ] [+] EMBL AU057559 [ CCTTTTCGCCTGGAGGAACATGGGGGAGACTATTGTTCCTGGTCTCCTGCATCTGTGCCCGATTGCAACGAA TCTCAACAGTTGGCACATCGATGGATGTTCCTACATTTTTTTGTTTTCTTTTCCGGCCCTGCTAAATTCTCTTA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||