These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 3155 fasta sequence [TCTTCCACCAAGCCACCCTGGTCCCACCCGTCCGCGGCTCGAGCCCCCCCTCAAAATCCCCCAACCCCGTGCGTGCCCGTGCCCGTGCCCCGCCCGCCCGCCCGCGTGCCGGATTTCGCCGTAAATCGGCAGCGTTTCCCCGTGCGGGGGGGCAGCGGCGGCGGTTGGATGGCGCTGTCCGCGTCGGCGGCGGCGTCGGCCGGGCGGGGGGCGCGGGCGGAGAAGGTGGGGAGGATCTTCGAGCGGTTCGATGCCAACGGGGACGGGGGGCTGGACCGCGACGAGATGGCGGCGCTCGTCGTCGCCGTCAACCCGCGGGTGAAGTTCAGCGAGGACCAGATCTCCGCCATCCTCGACGAGGTGTTCCGCACCTACGCCGAGTTCATACTCCCCGGGGGGCGGGGCCTCTCCCTGCCGGGGCTGCTACGCACCTACGACGACGGCGCCGGGGACGTCGACCGCGACTTCCTCGCGCTGTCCCTTCCCCCGCTCGAGTCCGGGGAGTCCTCCCCGGAGATCGCCGCGGGGGACCCGGCCGCCGCCTCGTCCCCGCCCTCCGGCGCCGCCGCCGCCGCGTCGCTCCTGGACGACCACATCAAGCCGCTTGGAGCAGCCGGTGGGGCGCCCTCGTCCAGCTCACGCGCCGCGGCGGCCGCGCCGGCGTGGGCGACGTCGCCCAGCCACGGGATTGCGTTCGACTCCTCCTGGGCGCTCCTCGACGACCTGGAGATACTAGTGAAGCGCCTCCGCTCCAAGCAGCTGCGGAGAACATCCTCCATCGACACGATCAACGGCAGCGGCGGCGCGGGGAACAACAATTTCGACTCCTTCTCCGAGGCCGGGTGGTCAAGGGAGATCTCCGGCCAAGCGGATTCGGCTTCGACCGCCGCGCCATGGGACGAGACGAGCCGCGACTACCTCACCTTCGTCAAGGAGCTCGCCGTGCTCCGCACGCGCGCGGACGCCTCCCGCTCACGGGAGGAGGCCTTCGACAATCACATGGTCATCGGCAGGGCGCTCTCCGAGCACCGCCTCTTCCGGGACGCGCTTAGCAGCTTCCGCCGCGCCTGCGAGCTGCAGCCCACTGACGTGCGCCCCCACTTCCGCGCGGGGAACTGCCTCTACGCCCTTGGCCGCCACTCGGAGGCCAAGGAAGAGTATCTCCTGGCGCTTGAGGCAGCGGAGGCAGGTGGCTCCCAGTCTGCGGACATCCTCCCACAGATCCATGTCAACCTTGGCATTGCCATGGAGGCTGAGGGGATGGTGCTCGGTGCCTGTGAGCACTACCGAGAGGCTGCCATACTGTGTCCTTCTCATGCCCGGGCGCTGAAGCTCCTCGGTAGCGCGCTCTTTGGTGTTGGTGAGTACCGTGCAGCCGAGAAGGCACTAGAGGAGGCCATCTTCTTGAAGCCAGACTATGCTGATGCACACTGTGATCTTGGGTCAGCCCTGCATGCGATCGGGGATGATGACCGTGCGGTTCAGGAGTTTCAGAAGGCAATTGATCTCAAACCTGGGCATGTTGATGCCTTGTACAATCTTGGTGGATTGAATATGGATGCAGGGCGCTTTGTGCGGGCTGCGGAGATGTATACTCGTGTGTTGAGCATCCGACCGAACCATTGGCGTGCTCAGCTAAACAAGGCTGTTGCTTTGCTTGGCCAGGGGGAGTCTGAGGAGGCCAAGAAGGCACTCAAGGAGGCATTTAAGATGACACAAAGGGTAGAGGTGTATGATGCCATATCTCATCTGAAGACACTGCAGAAGAAGAAACCAAAGCCTCCCAAAGGAAAAGATGATAGTCAAGGAGAGGAGGCCTTCGTTGTAGTGGAGCCATCCAAGTTCAAGAGGGTTGGAAGAAAGACTACCTTGCGGCAGGACCTTGCTAATGCCCTTGATATAAGAGCCTTTGAGAAAACGACAAAGCTTGGCCGCTGTGACGCGGAGCTTCTGAGGAAAGAGATGAACGAGACTGATGTCCCCATATCCTACTCAGGCGCTGGCAACCCAGAGAAGTCAATACGGAAAGCAGCTCTCGAGGTTATTCTCCACAGGCTCCTATCTTTCCTCAAGCCAGATACCTTTCAGGGTTCTGTGAAGGCGATTAACGAAAGAATCCTCTCCGTCCTTGATGCCTCTGGTTCTGGCCGTGTTGACCTTGGGATGTTCTTTGCTATTATCGCCCCAATTTGTTCTGGTCCTGTGGATAAGCGCAAGCGGGTTGTCTTTGATGCACTTCTTTGGCGTCCGGCAAGTGAAGGAAGCAGGGGTCAGATTAGGAGGAGCGATGCACTGTCCTACATCAAACTTCTTCGTGCTGTTTATATACCCACCCATGGGGCTAGCGACATGCTTGAAATGCATGGGGAGTCTGACCCCACTATGGTATCATACACGGAGTTCCTCGAAATGTTCAATGATCCCGATTGGGGATTTGGAATCCTAAGCACATTGGTGAAGCTTGAGGACAGCGATCACATTCGTCACGGCCGCCACACCTGCTCAATTTGCCGATATCCTATCATTGGTTCCCGATTCAAGGAGACAAAGCACTCCTTTAGCTTGTGCAATCGATGCTACAGTGAAGGGAAGGTTCCATCAGCATTCAAGTTGGATGAGTACAGGTTCAAAGAATATGGTAACGAGTCTGAGGCTCTTATCGATAAGTGCATGTGCTTTAATTTACATTCTAAGAAGCTCGAAGCTGATACTTGATCATTCGATCTTTGGTGTCGATTGCTCGAGCATGAATCTGTGTATCCCCTTTCTAGGTGCAAAGATCTCTAGATAGTCTCCTGCCCTCTTGTAAACTAAGGTGCTGTTCTGTTCGGAGTTTTCTGAATGTGTTCCAACTACTTGAAAATCCTAATCAATTAGCTATTGTTCGTCCAAGTGTATGGGAGTGAGAACATGTGAATTCCAAACACACTGTTGTTACAATCCCCAATGCTCTTGTTTAATAGAGATCCTTGCTGATATCCATGAGGTTTTATTTGAACCAAACAATTTTGGGCTATTTTTTTCTTTAATCACACTTGTATGATTTATAGCTTGGGTTGCAGGAATAGATGGTAAAATCACTATGTACATTCAGTTTTAAACTTCTTTGTAAGTTGGTCTAACAAAGATTATTTTCTAAGGCAGTCATCATGCTG] [+] EMBL AK121215 [TCTTCCACCAAGCCACCCTGGTCCCACCCGTCCGCGGCTCGAGCCCCCCCTCAAAATCCCCCAACCCCGTGCGTGCCCGTGCCCGTGCCCCGCCCGCCCGCCCGCGTGCCGGATTTCGCCGTAAATCGGCAGCGTTTCCCCGTGCGGGGGGGCAGCGGCGGCGGTTGGATGGCGCTGTCCGCGTCGGCGGCGGCGTCGGCCGGGCGGGGGGCGCGGGCGGAGAAGGTGGGGAGGATCTTCGAGCGGTTCGATGCCAACGGGGACGGGGGGCTGGACCGCGACGAGATGGCGGCGCTCGTCGTCGCCGTCAACCCGCGGGTGAAGTTCAGCGAGGACCAGATCTCCGCCATCCTCGACGAGGTGTTCCGCACCTACGCCGAGTTCATACTCCCCGGGGGGCGGGGCCTCTCCCTGCCGGGGCTGCTACGCACCTACGACGACGGCGCCGGGGACGTCGACCGCGACTTCCTCGCGCTGTCCCTTCCCCCGCTCGAGTCCGGGGAGTCCTCCCCGGAGATCGCCGCGGGGGACCCGGCCGCCGCCTCGTCCCCGCCCTCCGGCGCCGCCGCCGCCGCGTCGCTCCTGGACGACCACATCAAGCCGCTTGGAGCAGCCGGTGGGGCGCCCTCGTCCAGCTCACGCGCCGCGGCGGCCGCGCCGGCGTGGGCGACGTCGCCCAGCCACGGGATTGCGTTCGACTCCTCCTGGGCGCTCCTCGACGACCTGGAGATACTAGTGAAGCGCCTCCGCTCCAAGCAGCTGCGGAGAACATCCTCCATCGACACGATCAACGGCAGCGGCGGCGCGGGGAACAACAATTTCGACTCCTTCTCCGAGGCCGGGTGGTCAAGGGAGATCTCCGGCCAAGCGGATTCGGCTTCGACCGCCGCGCCATGGGACGAGACGAGCCGCGACTACCTCACCTTCGTCAAGGAGCTCGCCGTGCTCCGCACGCGCGCGGACGCCTCCCGCTCACGGGAGGAGGCCTTCGACAATCACATGGTCATCGGCAGGGCGCTCTCCGAGCACCGCCTCTTCCGGGACGCGCTTAGCAGCTTCCGCCGCGCCTGCGAGCTGCAGCCCACTGACGTGCGCCCCCACTTCCGCGCGGGGAACTGCCTCTACGCCCTTGGCCGCCACTCGGAGGCCAAGGAAGAGTATCTCCTGGCGCTTGAGGCAGCGGAGGCAGGTGGCTCCCAGTCTGCGGACATCCTCCCACAGATCCATGTCAACCTTGGCATTGCCATGGAGGCTGAGGGGATGGTGCTCGGTGCCTGTGAGCACTACCGAGAGGCTGCCATACTGTGTCCTTCTCATGCCCGGGCGCTGAAGCTCCTCGGTAGCGCGCTCTTTGGTGTTGGTGAGTACCGTGCAGCCGAGAAGGCACTAGAGGAGGCCATCTTCTTGAAGCCAGACTATGCTGATGCACACTGTGATCTTGGGTCAGCCCTGCATGCGATCGGGGATGATGACCGTGCGGTTCAGGAGTTTCAGAAGGCAATTGATCTCAAACCTGGGCATGTTGATGCCTTGTACAATCTTGGTGGATTGAATATGGATGCAGGGCGCTTTGTGCGGGCTGCGGAGATGTATACTCGTGTGTTGAGCATCCGACCGAACCATTGGCGTGCTCAGCTAAACAAGGCTGTTGCTTTGCTTGGCCAGGGGGAGTCTGAGGAGGCCAAGAAGGCACTCAAGGAGGCATTTAAGATGACACAAAGGGTAGAGGTGTATGATGCCATATCTCATCTGAAGACACTGCAGAAGAAGAAACCAAAGCCTCCCAAAGGAAAAGATGATAGTCAAGGAGAGGAGGCCTTCGTTGTAGTGGAGCCATCCAAGTTCAAGAGGGTTGGAAGAAAGACTACCTTGCGGCAGGACCTTGCTAATGCCCTTGATATAAGAGCCTTTGAGAAAACGACAAAGCTTGGCCGCTGTGACGCGGAGCTTCTGAGGAAAGAGATGAACGAGACTGATGTCCCCATATCCTACTCAGGCGCTGGCAACCCAGAGAAGTCAATACGGAAAGCAGCTCTCGAGGTTATTCTCCACAGGCTCCTATCTTTCCTCAAGCCAGATACCTTTCAGGGTTCTGTGAAGGCGATTAACGAAAGAATCCTCTCCGTCCTTGATGCCTCTGGTTCTGGCCGTGTTGACCTTGGGATGTTCTTTGCTATTATCGCCCCAATTTGTTCTGGTCCTGTGGATAAGCGCAAGCGGGTTGTCTTTGATGCACTTCTTTGGCGTCCGGCAAGTGAAGGAAGCAGGGGTCAGATTAGGAGGAGCGATGCACTGTCCTACATCAAACTTCTTCGTGCTGTTTATATACCCACCCATGGGGCTAGCGACATGCTTGAAATGCATGGGGAGTCTGACCACAC TGGTATCATACACGGAGTTCCTCGAAATGTTCAATGATCCCGATTGGGGATTTGGAATCCTAAGCACATTGGTGAAGCTTGAGGACAGCGATCACATTCGTCACGGCCGCCACACCTGCTCAATTTGCCGATATCCTATCATTGGTTCCCGATTCAAGGAGACAAAGCACTCCTTTAGCTTGTGCAATCGATGCTACAGTGAAGGGAAGGTTCCATCAGCATTCAAGTTGGATGAGTACAGGTTCAAAGAATATGGTAACGAGTCTGAGGCTCTTATCGATAAGTGCATGTGCTTTAATTTACATTCTAAGAAGCTCGAAGCTGATACTTGATCATTCGATCTTTGGTGTCGATTGCTCGAGCATGAATCTGTGTATCCCCTTTCTAGGTGCAAAGATCTCTAGATAGTCTCCTGCCCTCTTGTAAACTAAGGTGCTGTTCTGTTCGGAGTTTTCTGAATGTGTTCCAACTACTTGAAAATCCTAATCAATTAGCTATTGTTCGTCCAAGTGTATGGGAGTGAGAACATGTGAATTCCAAACACACTGTTGTTACAATCCCCAATGCTCTTGTTTAATAGAGATCCTTGCTGATATCCATGAGGTTTTATTTGAACCAAACAATTTTGGGCTATTTTTTTCTTTAATCACACTTGTATGATTTATAGCTTGGGTTGCAGGAATAGATGGTAAAATCACTATGTACATTCAGTTTTAAACTTCTTTGTAAGTTGGTCTAACAAAGATTATTTTCTAAGGCAGTCATCATGCTG] [+] EMBL CB621292 [ CTCCCAGTCTGCGGACATCCTCCCACAGATCCATGTCAACCTTGGCATTGCCATGGAGGCTGAGGGGATGGTGCTCGGTGCCTGTGAGCACTACCGAGAGGCTGCCATACTGTGTCCTTCTCATGCCCGGGCGCTGAAGCTCCTCGGTAGCGCGCTCTTTGGTGTTGGTGAGTACCGTGCAGCCGAGAAGGCACTAGAGGAGGCCATCTTCTTGAAGCCAGACTATGCTGATGCACACTGTGATCTTGGGTCAGCCCTGCATGCGATCGGGGATGATGACCGTGCGGTTCAGGAGTTTCAGAAGGCAATTGATCTCAAACCTGGGCATGTTGATGCCTTGTACAATCTTGGTGGATTGAATATGGATGCAGGGCGCTTTGTGCGGGCTGCGGAGATGTATACTCGTGTGTTGAGCATCCGACCGAACCATTGGCGTGCTCAGCTAAACAAGGCTGTTGCTTTGCTTGGCCAGGGGGAGTCTGAGGAGGCCAAGAAGGCACTCAAGGAGGCATTTAAGATGACACAAAGGGTAGAGGTGTATGATGCCATATCTCATCTGAAGACACTGCAGAAGAAGAAACCAAAGCCTCCCAAAGGAAAAGATGATAGTCAAGGAGAGGAGGCCTTCGTTGTAGTGGAGCCATCCAAGTTCAAGAGGGTTGGAAGAAAGACTACCTTGCGGCAGGACCTTGCTAATGCCCTTGATATAAGAGCCTTTGAGAGAACGACAAAGCTTGGCCGCTGCGACGC ] [+] EMBL CB675981 [ GCATTCAAGATGACACAAAGGGTAGAGGTGTATGATGCCATATCTCATCTGAAGACACTGCAGAAGAAGAAACCAAAGCCTCCCAAAGGAAAAGATGATAGTCAAGGAGAGGAGGCCTTCGTTGTAGTGGAGCCATCCAAGTTCAAGAGGGTTGGAAGAAAGACTACCTTGCGGCAGGACCTTGCTAATGCCCTTGATATAAGAGCCTTTGAGAAAACGACAAAGCTTGGCCGCTGTGACGCGGAGCTTCTGAGGAAAGAGATGAACGAGACTGATGTCCCCATATCCTACTCAGGCGCTGGCAACCCAGAGAAGTCAATACGGAAAGCAGCTCTCGAGGTTATTCTCCACAGGCTCCTATCTTTCCTCAAGCCAGATACCTTTCAGGGTTCTGTGAAGGCGATTAACGAAAGAATCCTCTCCGTCCTTGATGCCTCTGGTTCTGGCCGTGTTGACCTTGGGATGTTCTTTGCTATTATCGCCCCAATTTGTTCTGGTCCTGTGGATAAGCGCAAGCGGGTTGTCTTTGATGCACTTCTTTGGCGTCCGGCAAGTGAAGGAAGCAGGGGTCAGATTAGGAGGAGCGATGCACTGTCCTACATCAAACTTCTTCGTGCTGTTTATATACCCACCCATGGGGCTAGCGACATGCTTGAAATGCATGGGGAGTCTGACCCCACTATGGTATCATACACGGAGTTCCTCGAAATGTTCAATGATCCCGATTGGGGATTTGGAATCCTAAGCACATTGGTGAAGCTTGAGGACAGCGATCACATTCGTCACGGCCGCCACACCTGCTC ATTTGCCGA ] [+] EMBL CB679359 [ GAAAGCAGCTCTCGAGGTTATTCTCCACAGGCTCCTATCTTTCCTCAAGCCAGATACCTTTCAGGGTTCTGTGAAGGCGATTAACGAAAGAATCCTCTCCGTCCTTGATGCCTCTGGTTCTGGCCGTGTTGACCTTGGGATGTTCTTTGCTATTATCGCCCCAATTTGTTCTGGTCCTGTGGATAAGCGCAAGCGGGTTGTCTTTGATGCACTTCTTTGGCGTCCGGCAAGTGAAGGAAGCAGGGGTCAGATTAGGAGGAGCGATGCACTGTCCTACATCAAACTTCTTCGTGCTGTTTATATACCCACCCATGGGGCTAGCGACATGCTTGAAATGCATGGGGAGTCTGACCCCACTATGGTATCATACACGGAGTTCCTCGAAATGTTCAATGATCCCGATTGGGGATTTGGAATCCTAAGCACATTGGTGAAGCTTGAGGACAGCGATCACATTCGTCACGGCCGCCACACCTGCTCAATTTGCCGATATCCTATCATTGGTTCCCGATTCAAGGAGACAAAGCACTCCTTTAGCTTGTGCAATCGATGCTACAGTGAAGGGAAGGTTCCATCAGCATTCAAGTTGGATGAGTACAGGTTCAAAGAATATGGTAACGAGTCTGAGGCTCTTATCGATAAGTGCATGTGCTTTAATTTACATTCTAAGAAGCTCGAAGCTGATACTTGATCATTCGATCTTTGGTGTCGATTGCTCGAGCATGAATCTGTGTATCCCCTTTCTAGGTGCAAAGATCTCTAGATAGTCT ] [-] EMBL CB679360 [ GATACCTTTCAGGGTTCTGTGAAGGCGATTAACGAAAGAATCCTCTCCGTCCTTGATGCCTCTGGTTCTGGCCGTGTTGACCTTGGGATGTTCTTTGCTATTATCGCCCCAATTTGTTCTGGTCCTGTGGATAAGCGCAAGCGGGTTGTCTTTGATGCACTTCTTTGGCGTCCGGCAAGTGAAGGAAGCAGGGGTCAGATTAGGAGGAGCGATGCACTGTCCTACATCAAACTTCTTCGTGCTGTTTATATACCCACCCATGGGGCTAGCGACATGCTTGAAATGCATGGGGAGTCTGACCCCACTATGGTATCATACACGGAGTTCCTCGAAATGTTCAATGATCCCGATTGGGGATTTGGAATCCTAAGCACATTGGTGAAGCTTGAGGACAGCGATCACATTCGTCACGGCCGCCACACCTGCTCAATTTGCCGATATCCTATCATTGGTTCCCGATTCAAGGAGACAAAGCACTCCTTTAGCTTGTGCAATCGATGCTACAGTGAAGGGAAGGTTCCATCAGCATTCAAGTTGGATGAGTACAGGTTCAAAGAATATGGTAACGAGTCTGAGGCTCTTATCGATAAGTGCATGTGCTTTAATTTACATTCTAAGAAGCTCGAAGCTGATACTTGATCATTCGATCTTTGGTGTCGATTGCTCGAGCATGAATCTGTGTATCCCCTTTCTAGGTGCAAAGATCTCTAGATAGTCTCCTGCCCTCTTGTAAACTAAGGTGCTGTTCTGTTCGGAGTTTTCTGAATGAGGGCCAACTACTTGAAAATCCTAATCAATTAGCT ] [-] EMBL CB675982 [ AGGTTCCATCAGCATTCAAGTTGGATGAGTACAGGTTCAAAGAATATGGTAACGAGTCTGAGGCTCTTATCGATAAGTGCATGTGCTTTAATTTACATTCTAAGAAGCTCGAAGCTGATACTTGATCATTCGATCTTTGGTGTCGATTGCTCGAGCATGAATCTGTGTATCCCCTTTCTAGGTGCAAAGATCTCTAGATAGTCTCCTGCCCTCTTGTAAACTAAGGTGCTGTTCTGTTCGGAGTTTTCTGAATGTGTTCCAACTACTTGAAAATCCTAATCAATTAGCTATTGTTCGTCCAAGTGTATGGGAGTGAGAACATGTGAATTCCAAACACACTGTTGTTACAATCCCCAATGCTCTTGTTTAATAGAGATCCTTGCTGATATCCATGAGGTTTTATTTGAACCAAACAATTTTGGGCTATTTTTTTCTTTAATCACACTTGTATGATTTATAGCTTGGGTTGCAGGAATAGATGGTAAAATCACTATGTACATTCAGTTTTAAACTTCTTTGTAAGTTGGTCTAACAAAGATTATTTTCTAAGGCAGTCA ] consensusID : consensus_11879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 789 fasta sequence [AATCCTCTCCGTCCTTGATGCCTCTGGTTCTGGCCGTGTTGACCTTGGGATGTTCTTTGCTATTATCGCCCCAATTTGTTCTGGTCCTGTGGATAAGCGCAAGCGGGTTGTCTTTGATGCACTTCTTTGGCGTCCGGCAAGTGAAGGAAGCAGGGGTCAGATTAGGAGGAGCGATGCACTGTCCTACATCAAACTTCTTCGTGCTGTTTATATACCCACCCATGGGGCTAGCGACATGCTTGAAAT-GCATGGGGAGTCTGACCCCACTATGGTATCATACACGGAGTTCCTCGAAATGTTCAATGATCCCGATTGGGGATTTGGAATCCTAAGCACATTGGTGAAGCTTGAGGACAGCGATCACATTCGTCACGGCCGCCACACCTGCTCAATTTGCCGATATCCTATCATTGGTTCCCGATTCAAGGAGACAAAGCACTCCTTTAGCTTGTGCAATCGATGCTA-CA-GTGAAGGGAAGGTTCCA-TCAGCA-TTCAAGTTGGATGAGTACAGGTTCAAAGAATATGGTAACGAGTCTGAGGCTCTTATCGATAAGTGCATGTGCTTTAATTTACATTCTAAGAAGCTCGAAGCTGATA-CTTGAT-CATTCGATCTTTGGTGTCGATTGCTCGAGCATGAATCTGTGTATCCCCTTTGTAGGTGCAAAGATCTCTAGATAGTCTCCTGCCCTCTTGTAAACTAAGGTGCTGTTCTGTTCGGAGTTTTCTGAATGTGTTCCAACTACTTGAAAATCCTAATCAATTAGCTATTGTTCGTCCAAAAAAAAAAAAG] [-] EMBL CB621293 [AATCCTCTCCGTCCTTGATGCCTCTGGTTCTGGCCGTGTTGACCTTGGGATGTTCTTTGCTATTATCGCCCCAATTTGTTCTGGTCCTGTGGATAAGCGCAAGCGGGTTGTCTTTGATGCACTTCTTTGGCGTCCGGCAAGTGAAGGAAGCAGGGGTCAGATTAGGAGGAGCGATGCACTGTCCTACATCAAACTTCTTCGTGCTGTTTATATACCCACCCATGGGGCTAGCGACATGCTTGAAAT GCATGGGGAGTCTGACCCCACTATGGTATCATACACGGAGTTCCTCGAAATGTTCAATGATCCCGATTGGGGATTTGGAATCCTAAGCACATTGGTGAAGCTTGAGGACAGCGATCACATTCGTCACGGCCGCCACACCTGCTCAATTTGCCGATATCCTATCATTGGTTCCCGATTCAAGGAGACAAAGCACTCCTTTAGCTTGTGCAATCGATGCTA CA GTGAAGGGAAGGTTCCA TCAGCA TTCAAGTTGGATGAGTACAGGTTCAAAGAATATGGTAACGAGTCTGAGGCTCTTATCGATAAGTGCATGTGCTTTAATTTACATTCTAAGAAGCTCGAAGCTGATA CTTGAT CATTCGATCTTTGGTGTCGATTGCTCGAGCATGAATCTGTGTATCCCCTTTGTAGGTGCAAAGATCTCTAGATAGTCTCCTGCCCTCTTGTAAACTAAGGTGCTGTTCTGTTCGGAGTTTTCTGAATGTGTTCCAACTACTTGAAAATCCTAATCAATTAGCTATTGTTCGTCCAAAAAAAAAAAAG] [+] EMBL BM038789 [ TTGAAATCGCATGGGGAGTCTGACCCCACTATGGTATCATAC CGGAGTTCCTCGAAATGTTC ATGATCCCGATTGGGGATTTGGAATCCTAAGCACATTGGTGAAGCTTGAGGACAGCGATCACATTCGTCAC GCCGCCACACCTGCTCAATTTGCCGATATCCTATCATTGGTTCCCGATTCAAGGAGAC AAGCACTCCTTTAGCTTGT CCATCGATGCTACCACGTGAAGGGAAGGTTCCACTCAGCACTTCCAGTTGGATGAGTACAGGTTCCAAGAATATGGTAACGAGTCTGAGGCTCTTATCGATAAGTGCATGTGCTTTAATTTACATTCTAAGAAGCTCGAAGCTGATACCTTGATCCATTCGATCTTTGGTGTCGATTGCTCGAGCATGAATCTGTGTATCCCCTTTGTAGGT CCAAGATCTCTAGATAGTCTCCTGCCCTCTTGTAAACTAAGGTGCTGTTCTGTTCGGAGTTaaaaaaa ] consensusID : consensus_11879#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [TGCTACAGCACCTACGACAGACAGGCCACGGGGACAGTCGACCCGCGACTTCCTCAGCGCTGTCCACTTCACCACACAGCTTCGAGTCCGGGGAGTCACATCCCCGGAGATCCCGCGGGGGACCCGGCCGCCAGCCTCGTCCCCAGCCCTCCGGCAGCCAGCCAGCACAGCCAGCGTCAGCTCCTGGACAGACCACATCAAGCCGCTTGGAGCAGCCGGTGGGGCGCCCTCGTCCAGCTC] [+] EMBL BI808994 [TGCTACAGCACCTACGACAGACAGGCCACGGGGACAGTCGACCCGCGACTTCCTCAGCGCTGTCCACTTCACCACACAGCTTCGAGTCCGGGGAGTCACATCCCCGGAGATCCCGCGGGGGACCCGGCCGCCAGCCTCGTCCCCAGCCCTCCGGCAGCCAGCCAGCACAGCCAGCGTCAGCTCCTGGACAGACCACATCAAGCCGCTTGGAGCAGCCGGTGGGGCGCCCTCGTCCAGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11879#0 TCTTCCACCAAGCCACCCTGGTCCCACCCGTCCGCGGCTCGAGCCCCCCCTCAAAATCCC 60 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 CCAACCCCGTGCGTGCCCGTGCCCGTGCCCCGCCCGCCCGCCCGCGTGCCGGATTTCGCC 120 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GTAAATCGGCAGCGTTTCCCCGTGCGGGGGGGCAGCGGCGGCGGTTGGATGGCGCTGTCC 180 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GCGTCGGCGGCGGCGTCGGCCGGGCGGGGGGCGCGGGCGGAGAAGGTGGGGAGGATCTTC 240 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GAGCGGTTCGATGCCAACGGGGACGGGGGGCTGGACCGCGACGAGATGGCGGCGCTCGTC 300 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GTCGCCGTCAACCCGCGGGTGAAGTTCAGCGAGGACCAGATCTCCGCCATCCTCGACGAG 360 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GTGTTCCGCACCTACGCCGAGTTCATACTCCCCGGGGGGCGGGGCCTCTCCCTGCCGGGG 420 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 CTGCTACGCACCTACGACGACGGCGCCGGGGACGTCGACCGCGACTTCCTCGCGCTGTCC 480 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 CTTCCCCCGCTCGAGTCCGGGGAGTCCTCCCCGGAGATCGCCGCGGGGGACCCGGCCGCC 540 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GCCTCGTCCCCGCCCTCCGGCGCCGCCGCCGCCGCGTCGCTCCTGGACGACCACATCAAG 600 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 CCGCTTGGAGCAGCCGGTGGGGCGCCCTCGTCCAGCTCACGCGCCGCGGCGGCCGCGCCG 660 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GCGTGGGCGACGTCGCCCAGCCACGGGATTGCGTTCGACTCCTCCTGGGCGCTCCTCGAC 720 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GACCTGGAGATACTAGTGAAGCGCCTCCGCTCCAAGCAGCTGCGGAGAACATCCTCCATC 780 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GACACGATCAACGGCAGCGGCGGCGCGGGGAACAACAATTTCGACTCCTTCTCCGAGGCC 840 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GGGTGGTCAAGGGAGATCTCCGGCCAAGCGGATTCGGCTTCGACCGCCGCGCCATGGGAC 900 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GAGACGAGCCGCGACTACCTCACCTTCGTCAAGGAGCTCGCCGTGCTCCGCACGCGCGCG 960 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GACGCCTCCCGCTCACGGGAGGAGGCCTTCGACAATCACATGGTCATCGGCAGGGCGCTC 1020 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 TCCGAGCACCGCCTCTTCCGGGACGCGCTTAGCAGCTTCCGCCGCGCCTGCGAGCTGCAG 1080 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 CCCACTGACGTGCGCCCCCACTTCCGCGCGGGGAACTGCCTCTACGCCCTTGGCCGCCAC 1140 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 TCGGAGGCCAAGGAAGAGTATCTCCTGGCGCTTGAGGCAGCGGAGGCAGGTGGCTCCCAG 1200 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 TCTGCGGACATCCTCCCACAGATCCATGTCAACCTTGGCATTGCCATGGAGGCTGAGGGG 1260 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 ATGGTGCTCGGTGCCTGTGAGCACTACCGAGAGGCTGCCATACTGTGTCCTTCTCATGCC 1320 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 CGGGCGCTGAAGCTCCTCGGTAGCGCGCTCTTTGGTGTTGGTGAGTACCGTGCAGCCGAG 1380 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 AAGGCACTAGAGGAGGCCATCTTCTTGAAGCCAGACTATGCTGATGCACACTGTGATCTT 1440 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GGGTCAGCCCTGCATGCGATCGGGGATGATGACCGTGCGGTTCAGGAGTTTCAGAAGGCA 1500 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 ATTGATCTCAAACCTGGGCATGTTGATGCCTTGTACAATCTTGGTGGATTGAATATGGAT 1560 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GCAGGGCGCTTTGTGCGGGCTGCGGAGATGTATACTCGTGTGTTGAGCATCCGACCGAAC 1620 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 CATTGGCGTGCTCAGCTAAACAAGGCTGTTGCTTTGCTTGGCCAGGGGGAGTCTGAGGAG 1680 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GCCAAGAAGGCACTCAAGGAGGCATTTAAGATGACACAAAGGGTAGAGGTGTATGATGCC 1740 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 ATATCTCATCTGAAGACACTGCAGAAGAAGAAACCAAAGCCTCCCAAAGGAAAAGATGAT 1800 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 AGTCAAGGAGAGGAGGCCTTCGTTGTAGTGGAGCCATCCAAGTTCAAGAGGGTTGGAAGA 1860 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 AAGACTACCTTGCGGCAGGACCTTGCTAATGCCCTTGATATAAGAGCCTTTGAGAAAACG 1920 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 ACAAAGCTTGGCCGCTGTGACGCGGAGCTTCTGAGGAAAGAGATGAACGAGACTGATGTC 1980 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 CCCATATCCTACTCAGGCGCTGGCAACCCAGAGAAGTCAATACGGAAAGCAGCTCTCGAG 2040 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GTTATTCTCCACAGGCTCCTATCTTTCCTCAAGCCAGATACCTTTCAGGGTTCTGTGAAG 2100 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GCGATTAACGAAAGAATCCTCTCCGTCCTTGATGCCTCTGGTTCTGGCCGTGTTGACCTT 2160 consensus_11879#1 --------------AATCCTCTCCGTCCTTGATGCCTCTGGTTCTGGCCGTGTTGACCTT 46 consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GGGATGTTCTTTGCTATTATCGCCCCAATTTGTTCTGGTCCTGTGGATAAGCGCAAGCGG 2220 consensus_11879#1 GGGATGTTCTTTGCTATTATCGCCCCAATTTGTTCTGGTCCTGTGGATAAGCGCAAGCGG 106 consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 GTTGTCTTTGATGCACTTCTTTGGCGTCCGGCAAGTGAAGGAAGCAGGGGTCAGATTAGG 2280 consensus_11879#1 GTTGTCTTTGATGCACTTCTTTGGCGTCCGGCAAGTGAAGGAAGCAGGGGTCAGATTAGG 166 consensus_11879#2 --------TGCTACAGCACCT--ACGACAGACAGGCCACGGGGACAG---TCGACCCGCG 47 ** * ** * * ** * * ** * * ** *** ** * consensus_11879#0 AGGAGCGATGCACTGTCCTACATCAAACTTCTTCGTGCTGTTTATATACCCACCCATGGG 2340 consensus_11879#1 AGGAGCGATGCACTGTCCTACATCAAACTTCTTCGTGCTGTTTATATACCCACCCATGGG 226 consensus_11879#2 ACTTCCTCAGCGCTGTCC--------ACTTCACCACACAGCTTCGAGTCC-------GGG 92 * * ** ****** ***** * * * ** * ** *** consensus_11879#0 GCTAGCGACATGCTTGAAATGCATGGGGAGTCTGACCCCACTAT-GGTATCATACACGGA 2399 consensus_11879#1 GCTAGCGACATGCTTGAAATGCATGGGGAGTCTGACCCCACTAT-GGTATCATACACGGA 285 consensus_11879#2 G--AGTCACATCCCCGGAGATCCCGCGGGG---GACCCGGCCGCCAGCCTCGTCCCCAGC 147 * ** **** * * * * * ** * ***** * * ** * * * * consensus_11879#0 GTTCCTCGAAATGTTCAATGATCCCGATTGGGGATTTGGAATCCTAAGCACATTGGTGAA 2459 consensus_11879#1 GTTCCTCGAAATGTTCAATGATCCCGATTGGGGATTTGGAATCCTAAGCACATTGGTGAA 345 consensus_11879#2 CCTCCGGCAGCCAGCCAGCACAGCCAGCGTCAGCTCCTGGA--CAGACCACATCAA-GCC 204 *** * ** ** * * * * * * ***** * consensus_11879#0 GCTTGAGGACAGCGATCACATTCGTCACGGCCGCCACACCTGCTCAATTTGCCGATATCC 2519 consensus_11879#1 GCTTGAGGACAGCGATCACATTCGTCACGGCCGCCACACCTGCTCAATTTGCCGATATCC 405 consensus_11879#2 GCTTGGAG-CAGCCGGTGGGGCGCCCTCGTCCAGCTC----------------------- 240 ***** * **** * ** ** * * consensus_11879#0 TATCATTGGTTCCCGATTCAAGGAGACAAAGCACTCCTTTAGCTTGTGCAATCGATGCTA 2579 consensus_11879#1 TATCATTGGTTCCCGATTCAAGGAGACAAAGCACTCCTTTAGCTTGTGCAATCGATGCTA 465 consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 CAGTGAAGGGAAGGTTCCATCAGCATTCAAGTTGGATGAGTACAGGTTCAAAGAATATGG 2639 consensus_11879#1 CAGTGAAGGGAAGGTTCCATCAGCATTCAAGTTGGATGAGTACAGGTTCAAAGAATATGG 525 consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 TAACGAGTCTGAGGCTCTTATCGATAAGTGCATGTGCTTTAATTTACATTCTAAGAAGCT 2699 consensus_11879#1 TAACGAGTCTGAGGCTCTTATCGATAAGTGCATGTGCTTTAATTTACATTCTAAGAAGCT 585 consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 CGAAGCTGATACTTGATCATTCGATCTTTGGTGTCGATTGCTCGAGCATGAATCTGTGTA 2759 consensus_11879#1 CGAAGCTGATACTTGATCATTCGATCTTTGGTGTCGATTGCTCGAGCATGAATCTGTGTA 645 consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 TCCCCTTTCTAGGTGCAAAGATCTCTAGATAGTCTCCTGCCCTCTTGTAAACTAAGGTGC 2819 consensus_11879#1 TCCCCTTTGTAGGTGCAAAGATCTCTAGATAGTCTCCTGCCCTCTTGTAAACTAAGGTGC 705 consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 TGTTCTGTTCGGAGTTTTCTGAATGTGTTCCAACTACTTGAAAATCCTAATCAATTAGCT 2879 consensus_11879#1 TGTTCTGTTCGGAGTTTTCTGAATGTGTTCCAACTACTTGAAAATCCTAATCAATTAGCT 765 consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 ATTGTTCGTCCAAGTGTATGGGAGTGAGAACATGTGAATTCCAAACACACTGTTGTTACA 2939 consensus_11879#1 ATTGTTCGTCCAAAAAAAAAAAAG------------------------------------ 789 consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 ATCCCCAATGCTCTTGTTTAATAGAGATCCTTGCTGATATCCATGAGGTTTTATTTGAAC 2999 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 CAAACAATTTTGGGCTATTTTTTTCTTTAATCACACTTGTATGATTTATAGCTTGGGTTG 3059 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 CAGGAATAGATGGTAAAATCACTATGTACATTCAGTTTTAAACTTCTTTGTAAGTTGGTC 3119 consensus_11879#1 ------------------------------------------------------------ consensus_11879#2 ------------------------------------------------------------ consensus_11879#0 TAACAAAGATTATTTTCTAAGGCAGTCATCATGCTG 3155 consensus_11879#1 ------------------------------------ consensus_11879#2 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||