These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1087 fasta sequence [TTGCCTTCCTTTCCAAACCAGAGAGCGGTTTACAGAAAACCGCCTTTCTCTTCTTCCGTCTTCTTCCCTTTCCATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCACCGAGCAAACTCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGCCCCAAGCGAA-NCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCTGCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGCTCCCCTTCATCC-TCCGCCGCCTCCTCCCCGCCGCGGCGTCGTCCCCGTCCGGCGCGGC-GCTCTGCCACTGCG-TCGAGACCTCG-CTCGTCG-ACGCGCCGC-GCCGCGCCATGGACGTCGTCGTCCGCAACGTCTCCCTCCGCGGCCTCATCGAGGTCGAGG-AGCGGTCC-ACCTACCGGCCGCACCCGGAGCGGCCCGAGGAGTGGACGC-AGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGTCGCGGAGAAGGTCGAGACCCGCTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAGGGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTCCGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGATCGAAGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGTCCCTTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAGCTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAATTTGTGCCTGTTCTTGTTAAGCATATTCAGATATGCTATGACATTTCTAGTTGTTATTGTGCTGATTTGACGAAAAA] [+] EMBL AK069653 [TTGCCTTCCTTTCCAAACCAGAGAGCGGTTTACAGAAAACCGCCTTTCTCTTCTTCCGTCTTCTTCCCTTTCCATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCACCGAGCAAACTCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGCCCCAAGCGAAGCCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCTGCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGCTCCCCTTCATCC TCCGCCGCCTCCTCCCCGCCGCGGCGTCGTCCCCGTCCGGCGCGGC GCTCTGCCACTGCG TCGAGACCTCG CTCGTCG ACGCGCCGC GCCGCGCCATGGACGTCGTCGTCCGCAACGTCTCCCTCCGCGGCCTCATCGAGGTCGAGG AGCGGTCC ACCTACCGGCCGCACCCGGAGCGGCCCGAGGAGTGGACGC AGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGTCGCGGAGAAGGTCGAGACCCGCTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAGGGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTCCGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGATCGAAGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGTCCCTTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAGCTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAATTTGTGCCTGTTCTTGTTAAGCATATTCAGATATGCTATGACATTTCTAGTTGTTATTGTGCTGATTTGA ] [+] EMBL AU069253 [ CATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCACCGAGCAAACTCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGCCCCAAGCGAA NCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCTGCAGGCTGCGCGCTNCATCACGGTGCG ] [+] EMBL AU057507 [ ATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCACCGAGCAAACTCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGCCCCAAGCGAA NCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCTGCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGCTCCCCTTCATCCTTCCGCCGCCTCCTCCCCGCCGCGGCGTCGTCCCCGTCCGGCGCGGCGGCTCTGCCACTGCGTTCGAGACCTCGNTTCGTCGAAGGNGCCGCGGCNGGCCCATGGAAGTCGTCGTCCGCAACGTCTCCCTCCGCGGCCTCATCGAGGTCGAGGAAGCGGTCCAACTTAACGGCNGGAACCGGAGCGGCCCGAAGAGTGGAAGCAATTTCAGGCAGGAGANCAAGATCCGGTGCCG ] [+] EMBL AU057724 [ ATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCACCGAGCAAACTCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGCCCCAAGCGAA NCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCTGCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGCTCCCCTTCATCC TCCGCCGCCTCCTCCCCGCCGCGGCGTCGTCCCCGTCCGGCGCGGC GCTCTGCCACTGCG TCGAGACCTCG CTCGTCG ACGCGCCGC GCCGCGCCATGGACGTCGTCGTCCGCAACGTCTCCCTCCGCGGCCTCATCGAGGTCGAGG AGCGGTCC ACCTACCGGCCGCACCCGGAGCGGCCCGAGGAGTGGACGC A TTCAGGCAGGAGACCACGATTCGGTGCCGA ] [+] EMBL C73510 [ CAAACTCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGCCCCAAGCGAA GCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTCCCACGTNGCCGACGTCCACACCCTCCACCGTCGCGTCGACCCGGAGGCGGGGCGGCTGCAGNCTGCGCGCTCCATNACGGTGCGCTCCCCGCCGTTCCn ] [+] EMBL AU165742 [ nccgggGGCGTCGTCCCCGTCCGGCNCGGC G TTTGCCATTG G TCGAGACCTCG TTCGTCG ACGCGCCGCNCCCGCGCCATGGACGTCGTCGTCCGCAACGTCTCCCTCCGCGGCCTCATCGAGGTCGAGG AGCGGTCC ACCTACCGGCCGCACCCGGAGCGGCCCGAGGAGTGGACGC AGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGTCGCGGAGAAGGTCGAGACCCGCTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAGGGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTCCGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGATCGAAGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGTCCCTTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAGCTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAATTTGTGCCTGTTCTTGTTAAGCATATTCAGATATGCTATGACATTTCTAGTTGTTATTGTGCTGATTTGACGAAAAA] [+] EMBL AU197790 [ CCCGGAGCGGCCCGAGGAGTGGACGC AGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGTCGCGGAGAAGGTCGAGACCCGCTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAGGGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTCCGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGATCGAAGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGTCCCTTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAGCTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAAaaaa ] [+] EMBL AU101721 [ GGAGCGGCCCGAGGAGTGGACGC AGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGTCGCGGAGAAGGTCGAGACCC NTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAGGGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTCCGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGATCGAAGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGTCCCTTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAGCTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAAaaaa ] consensusID : consensus_11880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [TTCTTACTTGGCTTGGCCGCCCGGAACCGNGCAAANTNAAACCNTCGCCGNAGGAAAGAAAAACAAATCGAGAGAAAAAACCNTCGTTGTTCGCCGCCCCAAGCGAAGCCAGCCATGGGNGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGNGCTNTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGNGTCGACCCGGAGGCGGGGCGGNTGCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGTTCCCCTTCATCCTCCGCCGCCTCC] [-] EMBL AU181823 [TTCTTACTTGGCTTGGCCGCCCGGAACCGNGCAAANTNAAACCNTCGCCGNAGGAAAGAAAAACAAATCGAGAGAAAAAACCNTCGTTGTTCGCCGCCCCAAGCGAAGCCAGCCATGGGNGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGNGCTNTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGNGTCGACCCGGAGGCGGGGCGGNTGCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGTTCCCCTTCATCCTCCGCCGCCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11880#0 TTGCCTTCCTTTCCAAACCAGAGAGCGGTTTACAGAAAACCGCCTTTCTCTTCTTCCGTC 60 consensus_11880#1 ------------------------------------------------------------ consensus_11880#0 TTCTTCCCTTTCCATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCA-CCGAGCAAAC 119 consensus_11880#1 ------------------------TTCTTACTTGGCTTGGCCGCCCGGAACCGNGCAAAN 36 *** *** * ** * ******** * *** ***** consensus_11880#0 TCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCG 179 consensus_11880#1 TNAAACCNTCGCCGNAGGAAAGAAAAACAAATCGAGAGAAAAAACCNTCGTTGTTCGCCG 96 * ***** ****** * ***************************** *** ** ****** consensus_11880#0 CCCCAAGCGAANC-AGCCATGG-TGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTG 237 consensus_11880#1 CCCCAAGCGAAGCCAGCCATGGGNGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTG 156 *********** * ******** ************************************ consensus_11880#0 GGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCT 297 consensus_11880#1 GGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGNGCT 216 ******************************************************** *** consensus_11880#0 CTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCT 357 consensus_11880#1 NTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGNGTCGACCCGGAGGCGGGGCGGNT 276 *********************************** ********************* * consensus_11880#0 GCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGCTCCCCTTCATCCTCCGCCGCCT 417 consensus_11880#1 GCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGTTCCCCTTCATCCTCCGCCGCCT 336 ************************************* ********************** consensus_11880#0 CCTCCCCGCCGCGGCGTCGTCCCCGTCCGGCGCGGCGCTCTGCCACTGCGTCGAGACCTC 477 consensus_11880#1 CC---------------------------------------------------------- 338 ** consensus_11880#0 GCTCGTCGACGCGCCGCGCCGCGCCATGGACGTCGTCGTCCGCAACGTCTCCCTCCGCGG 537 consensus_11880#1 ------------------------------------------------------------ consensus_11880#0 CCTCATCGAGGTCGAGGAGCGGTCCACCTACCGGCCGCACCCGGAGCGGCCCGAGGAGTG 597 consensus_11880#1 ------------------------------------------------------------ consensus_11880#0 GACGCAGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGT 657 consensus_11880#1 ------------------------------------------------------------ consensus_11880#0 CGCGGAGAAGGTCGAGACCCGCTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAG 717 consensus_11880#1 ------------------------------------------------------------ consensus_11880#0 GGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTC 777 consensus_11880#1 ------------------------------------------------------------ consensus_11880#0 CGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGAT 837 consensus_11880#1 ------------------------------------------------------------ consensus_11880#0 CGAAGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGT 897 consensus_11880#1 ------------------------------------------------------------ consensus_11880#0 CCCTTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAG 957 consensus_11880#1 ------------------------------------------------------------ consensus_11880#0 CTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAATTTGTGC 1017 consensus_11880#1 ------------------------------------------------------------ consensus_11880#0 CTGTTCTTGTTAAGCATATTCAGATATGCTATGACATTTCTAGTTGTTATTGTGCTGATT 1077 consensus_11880#1 ------------------------------------------------------------ consensus_11880#0 TGACGAAAAA 1087 consensus_11880#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||