These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1228 fasta sequence [GTTCTAGAAGATTTCTCTTCGCGTCGCCGGCGCTGACACCGCCGCCGCCACCGCCATCTCCGGCGAAAACCCTACCTGCACCCGTCCAGCGAGCGCCAGGAGGTA-GGCTCTAGCCGGGC-GGAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTGCAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGATCCTGCGAATGATGTGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACTGAGTGATGTCATGTCTGAGCATTCGCTTGGTCCAAATGGAGGCCTTGTGTATTGCATGGATTACTTGGAGAAGAATATCGACTGGCTTGAGGAAAAGTTGAAACCTCTTATTGAAGATCACTATCTGTTATTTGATTTCCCGGGTCAAGTGGAACTTTTCTTTCTACACTCAAATGCGAGGAGTATTATTTACAAACTTATCAAAAAGCTAAACTTGCGGCTGACTGCCGTGCACCTTATTGATGCTCATTTGTGCTGTGATCCTGGGAAGTATGTGAGTGCATTGCTTCTTTCACTGT-CAACAATGCTACACATGGAGCTGCCACACATCAATGTTTTGTCAAAGATTGACCTCA-TTGAGAACTATGGAAACTTAGCA-TTCAACCTCAACTTCTACA-CTGATGTCGAGGATCTGTCTTATTTGCAACGCCATCTAGATCAAGATCCTCGTTCTGCCAAGTACAGGAAACTTACTAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCGGCAATCTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCACTTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTCGTGCAGAAGACAAG-CAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTACTCTCTCCATTTTAAAATGTTTGACACCATTGGCTTTTTAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK065270 [GTTCTAGAAGATTTCTCTTCGCGTCGCCGGCGCTGACACCGCCGCCGCCACCGCCATCTCCGGCGAAAACCCTACCTGCACCCGTCCAGCGAGCGCCAGGAGGTA GGCTCTAGCCGGGC GGAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTGCAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGATCCTGCGAATGATGTGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACTGAGTGATGTCATGTCTGAGCATTCGCTTGGTCCAAATGGAGGCCTTGTGTATTGCATGGATTACTTGGAGAAGAATATCGACTGGCTTGAGGAAAAGTTGAAACCTCTTATTGAAGATCACTATCTGTTATTTGATTTCCCGGGTCAAGTGGAACTTTTCTTTCTACACTCAAATGCGAGGAGTATTATTTACAAACTTATCAAAAAGCTAAACTTGCGGCTGACTGCCGTGCACCTTATTGATGCTCATTTGTGCTGTGATCCTGGGAAGTATGTGAGTGCATTGCTTCTTTCACTGT CAACAATGCTACACATGGAGCTGCCACACATCAATGTTTTGTCAAAGATTGACCTCA TTGAGAACTATGGAAACTTAGCA TTCAACCTCAACTTCTACA CTGATGTCGAGGATCTGTCTTATTTGCAACGCCATCTAGATCAAGATCCTCGTTCTGCCAAGTACAGGAAACTTACTAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCGGCAATCTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCACGTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTCGTGCAGAAGACAAG CAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTACTCTCTCCATTTTAAAAT ] [+] EMBL AU062528 [ TAGAAGATTTCTCTTCGCGTCGCCGGCGCTGACACCGCCGCCGCCACCGCCATCTCCGGCGAAAACCCTACCTGCACCCGTCCAGCGAGCGCCAGGAGGTAGGGCTCTAGCCGGGCGGGAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTGCAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGATCCTGCGAATAATGTGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACTGAGTGATGTCATGTCTGAGCATTCGCTTGGTCCAAATGGAGGCCTTGTGTATTGCATGGATTACTTGGAGAAGAATATCGACTGGCTTNAGGAAAAGTTG AACCTCTTATTG AGNTCACTATCTGTTATTTGATTTCCCGGGTCAAGTGG ACTTT ] [+] EMBL AK121253 [ AGAAGATTTCTCTTCGCGTCGCCGGCGCTGACACCGCCGCCGCCACCGCCATCTCCGGCGAAAACCCTACCTGCACCCGTCCAGCGAGCGCCAGGAGGTA GGCTCTAGCCGGGC GGAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTGCAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGATCCTGCGAATGATGTGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACTGAGTGATGTCATGTCTGAGCATTCGCTTGGTCCAAATGGAGGCCTTGTGTATTGCATGGATTACTTGGAGAAGAATATCGACTGGCTTGAGGAAAAGTTGAAACCTCTTATTGAAGATCACTATCTGTTATTTGATTTCCCGGGTCAAGTGGAACTTTTCTTTCTACACTCAAATGCGAGGAGTATTATTTACAAACTTATCAAAAAGCTAAACTTGCGGCTGACTGCCGTGCACCTTATTGATGCTCATTTGTGCTGTGATCCTGGGAAGTATGTGAGTGCATTGCTTCTTTCACTGT CAACAATGCTACACATGGAGCTGCCACACATCAATGTTTTGTCAAAGATTGACCTCA TTGAGAACTATGGAAACTTAGCA TTCAACCTCAACTTCTACA CTGATGTCGAGGATCTGTCTTATTTGCAACGCCATCTAGATCAAGATCCTCGTTCTGCCAAGTACAGGAAACTTACTAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCGGCAATCTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCACTTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTCGTGCAGAAGACAAG CAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTACTCTCTCCATTTTAAAATGTTTGACACCATTG ] [+] EMBL OSS1977A [ ccgAGAAGATTTCTCTTCGCGTCGCCGGCGCTGACACCGCCGCCGCCACCGCCATCTCCGGCGAAAACCCTACCTGCACCCGTCCAGCGAGCGCCAGGAGGTA GGCTCTAGCCGGGC GGAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTGCAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGATCCTGCGAATAATGTGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACTGAGTNATGTCATGTCTGAGCATTCG TTGGTCCAAATGGAGG CTTGTGTATTTCA ] [+] EMBL CA753847 [ AGCGAGCGCCAGGAGGTA GGCTCTAGCCGGGC GGAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTGCAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGATCCTGCGAATGATGCGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACTGAGTGATGTCATGTCTGAGCATTCGCTTGGTCCAAATGGAGGCCTTGTGTATTGCATGGATTACTTGGAGAAGAATATCGACTGGCTTGAGGAAAAGTTGAAACCTCTTATTGAAGATCACTATCTGTTATTTGATTTCCCGGGTCAAGTGGAACTTTTCTTTCTACACTCAAATGCGAGGAGTATTATTTACAAACTTATCAAAAAGCTAAACTTGCGGCTGACTGCCGTGCACCTTATTGATGCTCATTTGTGCTGTGATCCTGGGAAGTATGTGAGTGCATTGCTTCTTTCACTGTNNCAC ATGCTACACATGGAGCTGCCACACATCAATGTTTTGTNCAAGATTGACCTCA TTGAGAACTATGGAAACTTAGCATTTCACCCTC ACTTCTACA CTGATGTCGAGGATCT ] [+] EMBL BI799263 [ ACACATCAATGTTTTGTCAAAGATTGACCTCACTTGAGAACTATGGAAACTTAGCA TTCAACCTCAACTTCTACACCTGATGTCGAGGATCTGTCTTATTTGCAACGCCATCTAGATCAAGATCCTCGTTCTGCCAAGTACAGGAAACTTACTAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCGGCAATCTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCACTTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTCGTGCAGAAGACAAG CAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAAaaaaaaaa ] [-] EMBL CA761732 [ aagGACGAGACAAGGGGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCCTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTACTCCCTCCATTTTAAAATGTTTGACCCCATTGGCTTTTTAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [CTTTTACACTGATGTCGAGGATCTGTTTTATTTGCAACGCCATTTAGATCAAGATCCTCGTTNTGCCAAGTACAGGAAACTTACTAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCGGCAATNTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCNCTTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTNGTGCAGAAGACAAGCAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCNAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU174240 [CTTTTACACTGATGTCGAGGATCTGTTTTATTTGCAACGCCATTTAGATCAAGATCCTCGTTNTGCCAAGTACAGGAAACTTACTAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCGGCAATNTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCNCTTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTNGTGCAGAAGACAAGCAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCNAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11883#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence [CCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTACTCTCTCCATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF317132 [CCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTACTCTCTCCATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11883#0 GTTCTAGAAGATTTCTCTTCGCGTCGCCGGCGCTGACACCGCCGCCGCCACCGCCATCTC 60 consensus_11883#1 ------------------------------------------------------------ consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 CGGCGAAAACCCTACCTGCACCCGTCCAGCGAGCGCCAGGAGGTAGGCTCTAGCCGGGCG 120 consensus_11883#1 ------------------------------------------------------------ consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 GAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTG 180 consensus_11883#1 ------------------------------------------------------------ consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 CAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGA 240 consensus_11883#1 ------------------------------------------------------------ consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 TCCTGCGAATGATGTGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACT 300 consensus_11883#1 ------------------------------------------------------------ consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 GAGTGATGTCATGTCTGAGCATTCGCTTGGTCCAAATGGAGGCCTTGTGTATTGCATGGA 360 consensus_11883#1 ------------------------------------------------------------ consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 TTACTTGGAGAAGAATATCGACTGGCTTGAGGAAAAGTTGAAACCTCTTATTGAAGATCA 420 consensus_11883#1 ------------------------------------------------------------ consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 CTATCTGTTATTTGATTTCCCGGGTCAAGTGGAACTTTTCTTTCTACACTCAAATGCGAG 480 consensus_11883#1 ------------------------------------------------------------ consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 GAGTATTATTTACAAACTTATCAAAAAGCTAAACTTGCGGCTGACTGCCGTGCACCTTAT 540 consensus_11883#1 ------------------------------------------------------------ consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 TGATGCTCATTTGTGCTGTGATCCTGGGAAGTATGTGAGTGCATTGCTTCTTTCACTGTC 600 consensus_11883#1 ------------------------------------------------------------ consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 AACAATGCTACACATGGAGCTGCCACACATCAATGTTTTGTCAAAGATTGACCTCATTGA 660 consensus_11883#1 ------------------------------------------------------------ consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 GAACTATGGAAACTTAGCATTCAACCTCAACTTCTACACTGATGTCGAGGATCTGTCTTA 720 consensus_11883#1 ------------------------------CTTTTACACTGATGTCGAGGATCTGTTTTA 30 consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 TTTGCAACGCCATCTAGATCAAGATCCTCGTTCTGCCAAGTACAGGAAACTTACTAAGGA 780 consensus_11883#1 TTTGCAACGCCATTTAGATCAAGATCCTCGTTNTGCCAAGTACAGGAAACTTACTAAGGA 90 consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 GCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGA 840 consensus_11883#1 GCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGA 150 consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 CAAGGAAAGCGTCGGCAATCTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTC 900 consensus_11883#1 CAAGGAAAGCGTCGGCAATNTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTC 210 consensus_11883#2 ---------------------------------------------------------CCC 3 * consensus_11883#0 ATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCACTTGACTGGGA 960 consensus_11883#1 ATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCNCTTGACTGGGA 270 consensus_11883#2 ATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTAC 63 ** * ** * ** * ** * ** * * * * * ** consensus_11883#0 TTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTCGTGCAGAA 1020 consensus_11883#1 TTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTNGTGCAGAA 330 consensus_11883#2 TCTCTCCATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 123 * ** ** * * * * * ** * * *** * * ** * ** consensus_11883#0 GACAAGCAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTAT 1080 consensus_11883#1 GACAAGCAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTAT 390 consensus_11883#2 AAAAAAAAAAAAAAAAAAAA---------------------------------------- 143 * ** ** * * ** consensus_11883#0 GCTTGAATGAGAGCTCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGA 1140 consensus_11883#1 GCTTGAATGAGAGCTCCATTTGCCCCCNAAAAAAAAAAAAAAAAAAAAA----------- 439 consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 CATGCAAACTGGAACTGAGAAATGTACTCTCTCCATTTTAAAATGTTTGACACCATTGGC 1200 consensus_11883#1 ------------------------------------------------------------ consensus_11883#2 ------------------------------------------------------------ consensus_11883#0 TTTTTAAAAAAAAAAAAAAAAAAAAAAA 1228 consensus_11883#1 ---------------------------- consensus_11883#2 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||