|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11890#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2366 fasta sequence
[GAGAAGGAGAAGGCACGCACCTCAAGATATACCTACTGTTTATTCCCTTGTCCTGCCACGTTGCTCCAAGAAGCAGCTCAGCTCGCCGTGCCCTGCAGCTCTACCGGCAGCATCATCATCACCTGTATCCCCGAAAGGCAGCTTCTTCCGGTTGTAGCTACCGAGCTACCAGTACCACCCACCCTGAGAGCCAAGAAATGGCGGCCTGATTGGGCCCCCCCGTGAGCTCCGAATCCGCCGGCGGCCAACTGCCGGATCTCCTCGCAGCCAGCGCGCCGCCGGGAGGGACGGAGATTGGCGGCGGA-GGAGGGGAGGTGTCCAGGCCAGGTCAGGTGGGATCTCCGCTTGCTTCGCCGGCTTAGAAATCGGCATCTTTGTCTTGCAGATGTGAGCTTGCAAGTGTGGGGTCTCCGCGTCTTTTTCCAGGTGGCAGGCATGGAGGTGAGGCTGCTGCTTCTAGTGTTCATATGTCTGCATGCTCTTCTTTGGGCGGCTTCGGCTCAGCAGCCAGAGGAGGCGACGGTCATAGTTAAGGGATCGACAAAAATCGCTGAAACGAATAAAAATTATATATGTGCTACAATCGATTGGTGGCCACCAGAGAAGTGTAACTATAATCAGTGTCCATGGGGCCAATCGTCAATTCTAAACTTGGATTTGGATCATCCCTTCCTGGCTCAAGCCATTCAAGCATTTGATAATTTGAGGATTAGACTGGGAGGCTCTTTGCAAGACCGAGTTGTTTATGATGTGGGTACAAACAGTCCATGCGCCCCGTTCACAAACATGTCAAATGGTTTATTTGGTTTCTCAGATGGTTGTCTAAGCATGGATAGGTGGGACAAACTGAATGCTCTATTCCAAAAAACAGGTGCAATTATCACATTTGGTCTGAATGCGCTCTATGGGAGGTACAATGTCCGTCGTTCTTTCTGGGCTAGCAAATGGAACTCTACAAATGCATATAATTTTGTAAAATACACAATCTCAAAGGGATATCCAGTTGACTCATGGGAATATGGTAATGAACTGAGCGGGCATGGAATTGGGGCAAGAGTCGATGCTACACTGTATGGAAAAGATGCAATTGAACTTAAATCCATCTTTCAACAGTTGTACAAGGCACCACTCTCCCAGCCATCCCTGTTAGCCCCTGGAGGATTCTTTGATCAGCAGTGGTACACTCAGCTACTTCAGACTTCTGGTCATGGCGTTGTCAGTGCTTTGACGCATCATATTTATAATCTTGGTGGAGGGAATGATGCCCACCTTATAAGGAAGATATTAGATCCAAAGTATTTAGATCGTTCAGAAGATACTTATAGGGATATGCAACTCGCCCTTCAAAGGCATGGAACATGGGCTTCTGCCTGGGTCAGCGAAAGCGGAGGTGTATTCAACAATGGCGGTGAACTTGTGTCAAACACTTTCATCAATAGCATCTGGTATCTTGATCAGCTTGGAATGGCATCTAAGTACAATACAAAAATATTCTGCAGGCAGACTCTGATTGGTGGCCACTATGGTCTACTTGACACCCAAACTTTTTTGCCAAATCCTGATTACTATAGTGCTCTACTATGGCATCGGCTTATGGGCAGGGAAGTTCTTTCAGTTGATATCAATGCGCCGCGTAAACTGCGTGCTTATGCTCATTGCAGGAAACAGCAGCAAGGAATCACCCTCCTGTTGATCAACCTGAGCAATACCACCGGATACAACGTCACCCTCCAGAATGACATCAATGTCAACCTTGACAAAACAGCCAGCCTTCATAAGCACAATTCTTTCTCACACAGCCTCAGAAGAGCGGTTTCATGGCTGGGGCGCAAGCCGTCAAGCGACGTCGCGAGGAGGGAGGAGTACCACCTGACGGCCAAGGACGGCGACCTCCAGAGCAAGACGATGCTGCTCAACGGCGCACCGCTGGAACTCTCGGACGACGGCGGCGTTCCGGCCATGAGCCCTGCGCTCGTTGCTGTCAACTCGCCGGTGTACCTGGCACCGACATCGATCGCCTTTGTAGTTCTTCCAATGTTTGAGGCCAAGGCCTGTTCTTGAGTGATCAATCTTGCCTTCTTGTTGAGTATTACGCCCTTAGAATGTTCCATTTGTTCTTTTCTGGTTTAAATAGCAAAACCCTTGGAATGTAAGCCTTTAGAATGTAAAAGAATGGAGTGTTCCATTTGTTCGTTTTCTGGTTTGAATAACAAAGCCTTTAGAATGTAAAAGAATGTACCAAAACCCTTCGAATACAAGAAGGATCACAAGAATTTACCTTAGAATGCATAGAACGATTACAAGAATTTAAACATATTGTGAGTAAATTACAAGAATGTAAACAGGTTTTGAGTAAATAACAATTG]
[+] EMBL AK072765 [GAGAAGGAGAAGGCACGCACCTCAAGATATACCTACTGTTTATTCCCTTGTCCTGCCACGTTGCTCCAAGAAGCAGCTCAGCTCGCCGTGCCCTGCAGCTCTACCGGCAGCATCATCATCACCTGTATCCCCGAAAGGCAGCTTCTTCCGGTTGTAGCTACCGAGCTACCAGTACCACCCACCCTGAGAGCCAAGAAATGGCGGCCTGATTGGGCCCCCCCGTGAGCTCCGAATCCGCCGGCGGCCAACTGCCGGATCTCCTCGCAGCCAGCGCGCCGCCGGGAGGGACGGAGATTGGCGGCGGA GGAGGGGAGGTGTCCAGGCCAGGTCAGGTGGGATCTCCGCTTGCTTCGCCGGCTTAGAAATCGGCATCTTTGTCTTGCAGATGTGAGCTTGCAAGTGTGGGGTCTCCGCGTCTTTTTCCAGGTGGCAGGCATGGAGGTGAGGCTGCTGCTTCTAGTGTTCATATGTCTGCATGCTCTTCTTTGGGCGGCTTCGGCTCAGCAGCCAGAGGAGGCGACGGTCATAGTTAAGGGATCGACAAAAATCGCTGAAACGAATAAAAATTATATATGTGCTACAATCGATTGGTGGCCACCAGAGAAGTGTAACTATAATCAGTGTCCATGGGGCCAATCGTCAATTCTAAACTTGGATTTGGATCATCCCTTCCTGGCTCAAGCCATTCAAGCATTTGATAATTTGAGGATTAGACTGGGAGGCTCTTTGCAAGACCGAGTTGTTTATGATGTGGGTACAAACAGTCCATGCGCCCCGTTCACAAACATGTCAAATGGTTTATTTGGTTTCTCAGATGGTTGTCTAAGCATGGATAGGTGGGACAAACTGAATGCTCTATTCCAAAAAACAGGTGCAATTATCACATTTGGTCTGAATGCGCTCTATGGGAGGTACAATGTCCGTCGTTCTTTCTGGGCTAGCAAATGGAACTCTACAAATGCATATAATTTTGTAAAATACACAATCTCAAAGGGATATCCAGTTGACTCATGGGAATATGGTAATGAACTGAGCGGGCATGGAATTGGGGCAAGAGTCGATGCTACACTGTATGGAAAAGATGCAATTGAACTTAAATCCATCTTTCAACAGTTGTACAAGGCACCACTCTCCCAGCCATCCCTGTTAGCCCCTGGAGGATTCTTTGATCAGCAGTGGTACACTCAGCTACTTCAGACTTCTGGTCATGGCGTTGTCAGTGCTTTGACGCATCATATTTATAATCTTGGTGGAGGGAATGATGCCCACCTTATAAGGAAGATATTAGATCCAAAGTATTTAGATCGTTCAGAAGATACTTATAGGGATATGCAACTCGCCCTTCAAAGGCATGGAACATGGGCTTCTGCCTGGGTCAGCGAAAGCGGAGGTGTATTCAACAATGGCGGTGAACTTGTGTCAAACACTTTCATCAATAGCATCTGGTATCTTGATCAGCTTGGAATGGCATCTAAGTACAATACAAAAATATTCTGCAGGCAGACTCTGATTGGTGGCCACTATGGTCTACTTGACACCCAAACTTTTTTGCCAAATCCTGATTACTATAGTGCTCTACTATGGCATCGGCTTATGGGCAGGGAAGTTCTTTCAGTTGATATCAATGCGCCGCGTAAACTGCGTGCTTATGCTCATTGCAGGAAACAGCAGCAAGGAATCACCCTCCTGTTGATCAACCTGAGCAATACCACCGGATACAACGTCACCCTCCAGAATGACATCAATGTCAACCTTGACAAAACAGCCAGCCTTCATAAGCACAATTCTTTCTCACACAGCCTCAGAAGAGCGGTTTCATGGCTGGGGCGCAAGCCGTCAAGCGACGTCGCGAGGAGGGAGGAGTACCACCTGACGGCCAAGGACGGCGACCTCCAGAGCAAGACGATGCTGCTCAACGGCGCACCGCTGGAACTCTCGGACGACGGCGGCGTTCCGGCCATGAGCCCTGCGCTCGTTGCTGTCAACTCGCCGGTGTACCTGGCACCGACATCGATCGCCTTTGTAGTTCTTCCAATGTTTGAGGCCAAGGCCTGTTCTTGAGTGATCAATCTTGCCTTCTTGTTGAGTATTACGCCCTTAGAATGTTCCATTTGTTCTTTTCTGGTTTAAATAGCAAAACCCTTGGAATGTAAGCCTTTAGAATGTAAAAGAATGGAGTGTTCCATTTGTTCGTTTTCTGGTTTGAATAACAAAGCCTTTAGAATGTAAAAGAATGTACCAAAACCCTTCGAATACAAGAAGGATCACAAGAATTTACCTTAGAATGCATAGAACGATTACAAGAATTTAAACATATTGTGAGTAAATTACAAGAATGTAAACAGGTTTTGAGTAAATAACAATTG]
[+] EMBL AK105099 [ CTCAGCTCGCCGTGCCCTGCAGCTCTACCGGCAGCATCATCATCACCTGTATCCCCGAAAGGCAGCTTCTTCCGGTTGTAGCTACCGAGCTACCAGTACCACCCACCCTGAGAGCCAAGAAATGGCGGCCTGATTGGGCCCCCCCGTGAGCTCCGAATCCGCCGGCGGCCAACTGCCGGATCTCCTCGCAGCCAGCGCGCCGCCGGGAGGGACGGAGATTGGCGGCGGA GGAGGGGAGGTGTCCAGGCCAGGTCAGGTGGGATCTCCGCTTGCTTCGCCGGCTTAGAAATCGGCATCTTTGTCTTGCAGATGTGAGCTTGCAAGTGTGGGGTCTCCGCGTCTTTTTCCAGGTGGCAGGCATGGAGGTGAGGCTGCTGCTTCTAGTGTTCATATGTCTGCATGCTCTTCTTTGGGCGGCTTCGGCTCAGCAGCCAGAGGAGGCGACGGTCATAGTTAAGGGATCGACAAAAATCGCTGAAACGAATAAAAATTATATATGTGCTACAATCGATTGGTGGCCACCAGAGAAGTGTAACTATAATCAGTGTCCATGGGGCCAATCGTCAATTCTAAACTTGGATTTGGATCATCCCTTCCTGGCTCAAGCCATTCAAGCATTTGATAATTTGAGGATTAGACTGGGAGGCTCTTTGCAAGACCGAGTTGTTTATGATGTGGGTACAAACAGTCCATGCGCCCCGTTCACAAACATGTCAAATGGTTTATCTGGTTTCTCAGATGGTTGTCTAAGCATGGATAGGTGGGACAAACTGAATGCTCTATTCCAAAAAACAGGTGCAATTATCACATTTGGTCTGAATGCGCTCTATGGGAGGTACAATGTCCGTCGTTCTTTCTGGGCTAGCAAATGGAACTCTACAAATGCATATAATTTTGTAAAATACACAATCTCAAAGGGATATCCAGTTGACTCATGGGAATATGGTAATGAACTGAGCGGGCATGGAATTGGGGCAAGAGTCGATGCTACACTGTATGGAAAAGATGCAATTGAACTTAAATCCATCTTTCAACAGTTGTACAAGGCACCACTCTCCCAGCCATCCCTGTTAGCCCCTGGAGGATTCTTTGATCAGCAGTGGTACACTCAGCTACTTCAGACTTCTGGTCATGGCGTTGTCAGTGCTTTGACGCATCATATTTATAATCTTGGTGGAGGGAATGATGCCCACCTTATAAGGAAGATATTAGATCCAAAGTATTCAGATCGTTCAGAAGATACTTATAGGGATATGCAACTCACCCTTCAAAGGCATGGAACATGGGCTTCTGCCTGGGTCAGCGAAAGCGGAGGTGTATTCAACAATGGCGGTGAACTTGTGTCAAACACTTTCATCAATAGCATCTGGTATCTTGATCAGCTTGGAATGGCATCTA ]
[+] EMBL CF279723 [ CGAGCTACCAGTACCACCCACCCTGAGAGCCAAGAAATGGCGGCCTGATTGGGCCCCCCCGTGAGCTCCGAATCCGCCGGCGGCCAACTGCCGGATCTCCTCGCAGCCAGCGCGCCGCCGGGAGGGACGGAGATTGGCGGCGGAGGGAGGGGAGGTGTCCAGGCCAGGTCAGGTGGGATCTCCGCTTGCTTCGCCGGCTTAGAAATCGGCATCTTTGTCTTGCAGATGTGAGCTTGCAAGTGTGGGGTCTCCGCGTCTTTTTCCAGGTGGCAGGCATGGAGGTGAGGCTGCTGCTTCTAGTGTTCATATGTCTGCATGCTCTTCTTTGGGCGGCTTCGGCTCAGCAGCCAGAGGAGGCGACGGTCATAGTTAAGGGATCGACAAAAATCGCTGAAACGAATAAAAATTATATATGTGCTACAATCGATTGGTGGTCACCAGAGAAGTGTAACTATAATCAGTGTCCATGGGGCCAATCGTCAATTCTAAACTTGGATTTGGATCATCCCTTCCTGGCTCAAGCCATTCAAGCATTTGATAATTTGAGGATTAGACTGGGAGGCTCTTTGC AGACCGAGTTGTTTATGATGTGGGTACAAACAGTCCATGCGCCCCGTTCACAAACATGTCAAATGGTTTATT ]
[-] EMBL CF279724 [ GCTGCTCAACGGCGCACCGCTGGAACTCTCGGACGACGGCGGCGTTCCGGCCATGAGCCCTGCGCTCGTTGCTGTCAACTCGCCGGTGTACCTGGCACCGACATCGATCGCCTTTGTAGTTCTTCCAATGTTTGAGGCCAAGGCCTGTTCTTGAGTGATCAATCTTGCCTTCTTGTTGAGTATTACGCCCTTAGAATGTTCCATTTGTTCTTTTCTGGTTTAAATAGCAAAACCCTTGGAATGTAAGCCTTTAGAATGTAAAAGAATGGAGTGTTCCATTTGTTCGTTTTCTGGTTTGAATAACAAAGCCTTTAGAATGTAAAAaa ]
consensusID : consensus_11890#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[AGAGGACGAGACAAGGGGTCGGACGANGGCGGCGTTCCGGCCATGAGCCCTGCGCTCGTTGCTGTCAACTTGCCGGTGTACCTGGCACCGACATCGATCGCCTTTGTAGTTCTTCCAATGTTTGAGGCCAAGGCCTGTTCTTGAGTGATCAATCTTGCCTTCTTGTTGAGTATTACGCCCTTAGAATGTTCCATTTGTTCTTTTCTGGTTTAAATAGCAAAACCCTTGGAATGTAAGCCTTTAGAATGTAAAAGAATGGAGTGTTCCATTTGTTCGTTTTCTGGTTTGAATAGCAAAGCCTTTAGAATGTAAAAGAATGTACCAAAACCCTTCGAATACAAGAAGGATCCCAAGAATTTACCTTAGAATGCATAGAACGATTACAAGAATTTAAACATATTGTAAGTAAATTACAAGAATGTAAACAGATTTTGAGTAAATAACAATTGAATTGTGAGCAAAAAAAAAAAAAAA]
[-] EMBL CA762353 [AGAGGACGAGACAAGGGGTCGGACGANGGCGGCGTTCCGGCCATGAGCCCTGCGCTCGTTGCTGTCAACTTGCCGGTGTACCTGGCACCGACATCGATCGCCTTTGTAGTTCTTCCAATGTTTGAGGCCAAGGCCTGTTCTTGAGTGATCAATCTTGCCTTCTTGTTGAGTATTACGCCCTTAGAATGTTCCATTTGTTCTTTTCTGGTTTAAATAGCAAAACCCTTGGAATGTAAGCCTTTAGAATGTAAAAGAATGGAGTGTTCCATTTGTTCGTTTTCTGGTTTGAATAGCAAAGCCTTTAGAATGTAAAAGAATGTACCAAAACCCTTCGAATACAAGAAGGATCCCAAGAATTTACCTTAGAATGCATAGAACGATTACAAGAATTTAAACATATTGTAAGTAAATTACAAGAATGTAAACAGATTTTGAGTAAATAACAATTGAATTGTGAGCAAAAAAAAAAAAAAA]
consensusID : consensus_11890#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence
[AGGTTATTTTATCATTATTAGTCCACTTTTTGTAATTAATAAGCAAAATTCATCAATGGCGACGCCATGTTTTCAGGGAATGATGCCCACCTTATAAGGAAGATATTAGATCCAAAGTATTTAGATCGTTCAGAAGATACTTATAGGGATATGCAACTCACCCTTCAAAGGCATGGAACATGGGCTTCTGCCTGGGTCAGCGAAAGCGGAGGTGTATTCAACAATGGCGGTGAACTTGTGTCAAACACTTTCATCAATAGCATCTGGTATCTTGATCAGCTTGGAATGGCATCTAAGTACAATACAAAAATATTCTGCAGGCAGACTCTGATTGGTGGCCACTATGGTCTACTTGACACCCAAACTTTTTTGCCAAATCCTGATTACTATAGTGCTCTACTATGGCATCGGCTTATGGGCAGGGAAG]
[+] EMBL AU176455 [AGGTTATTTTATCATTATTAGTCCACTTTTTGTAATTAATAAGCAAAATTCATCAATGGCGACGCCATGTTTTCAGGGAATGATGCCCACCTTATAAGGAAGATATTAGATCCAAAGTATTTAGATCGTTCAGAAGATACTTATAGGGATATGCAACTCACCCTTCAAAGGCATGGAACATGGGCTTCTGCCTGGGTCAGCGAAAGCGGAGGTGTATTCAACAATGGCGGTGAACTTGTGTCAAACACTTTCATCAATAGCATCTGGTATCTTGATCAGCTTGGAATGGCATCTAAGTACAATACAAAAATATTCTGCAGGCAGACTCTGATTGGTGGCCACTATGGTCTACTTGACACCCAAACTTTTTTGCCAAATCCTGATTACTATAGTGCTCTACTATGGCATCGGCTTATGGGCAGGGAAG]
consensusID : consensus_11890#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence
[CCATTCAAGCATTTGATAATTTGAGGATTAGACTGGGAGGCTCTTTGCAAGACCGAGTTGTTTATGATGTGGGTACAAACAGTCCATGCGCCCCGTTCACAAACATGTCAAATGGTTTATTTGGTTTCTCAGATGTNTTTTTAAGCATGGATAGGTGGGACAAACTGAATGCTCTATTCCAAAAAACAGGGTAATGAACTGAGCGGGCATGGAATTGGGGCAAGAGTCGATGCTACACTGTATGGAAAAGATGCAATTGAACTTAAATCCATCTTTCAACAGTTGTACAAGGCACCACTCTCCCAGCCATCCCTGTTAGCCCCTGGAGGATTCTTTGATCAGCAGTGGTACACTCAGCTACTTCAGACTTCTGGTCATGGCGTTGTCAGTGCTTTGACGCA]
[+] EMBL CF325984 [CCATTCAAGCATTTGATAATTTGAGGATTAGACTGGGAGGCTCTTTGCAAGACCGAGTTGTTTATGATGTGGGTACAAACAGTCCATGCGCCCCGTTCACAAACATGTCAAATGGTTTATTTGGTTTCTCAGATGTNTTTTTAAGCATGGATAGGTGGGACAAACTGAATGCTCTATTCCAAAAAACAGGGTAATGAACTGAGCGGGCATGGAATTGGGGCAAGAGTCGATGCTACACTGTATGGAAAAGATGCAATTGAACTTAAATCCATCTTTCAACAGTTGTACAAGGCACCACTCTCCCAGCCATCCCTGTTAGCCCCTGGAGGATTCTTTGATCAGCAGTGGTACACTCAGCTACTTCAGACTTCTGGTCATGGCGTTGTCAGTGCTTTGACGCA]
consensusID : consensus_11890#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence
[GCGCNCCGCTGGAACTNTCGGACGACGGCGGCGTTCCGGCCATGAGCCCTGCGCTCGTTGCTGTCAACTCGCCGGTGTACCTGGCACCGACATCGATCGCCTTTGTAGTTCTTCCAATGTTTGAGGCCAAGGCCTGTTNTTGAGTGATCAATCTTGCCTTCTTGTTGAGTATTACGCCCTTANAATGTTCCATTTGTTCTTTTCTGGTTTAAANAGCAAAACCCTTGGAATGTAAGCCTTTAGAATGTAAAAGAATGGAGTGTTCCATTTGTTCGTTTTCTGGTTTGAATAACAAAGCCTTTAGAATGTAAAAGAATGTACCAAAACCCTTCGAATACAANAAGGATCNCAAGAATTTNCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU176456 [GCGCNCCGCTGGAACTNTCGGACGACGGCGGCGTTCCGGCCATGAGCCCTGCGCTCGTTGCTGTCAACTCGCCGGTGTACCTGGCACCGACATCGATCGCCTTTGTAGTTCTTCCAATGTTTGAGGCCAAGGCCTGTTNTTGAGTGATCAATCTTGCCTTCTTGTTGAGTATTACGCCCTTANAATGTTCCATTTGTTCTTTTCTGGTTTAAANAGCAAAACCCTTGGAATGTAAGCCTTTAGAATGTAAAAGAATGGAGTGTTCCATTTGTTCGTTTTCTGGTTTGAATAACAAAGCCTTTAGAATGTAAAAGAATGTACCAAAACCCTTCGAATACAANAAGGATCNCAAGAATTTNCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11890#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence
[GTTCCCTTTGTTCTTTTTTGGTTTAAATAGCCAAACCCTTGGGATGTAAGCCTTTAGAATGTTAAAGAATGGAGTGTTCCCTTTGTTCGTTTTCTGGTTTGAATAACAAAGCCTTTAGGATGTTAAAGAATGTTCCAAAACCCTTCGGATTCAAGAAGGGTCCCAAGGATTTTCCT]
[-] EMBL CF323684 [GTTCCCTTTGTTCTTTTTTGGTTTAAATAGCCAAACCCTTGGGATGTAAGCCTTTAGAATGTTAAAGAATGGAGTGTTCCCTTTGTTCGTTTTCTGGTTTGAATAACAAAGCCTTTAGGATGTTAAAGAATGTTCCAAAACCCTTCGGATTCAAGAAGGGTCCCAAGGATTTTCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11890#0 GAGAAGGAGAAGGCACGCACCTCAAGATATACCTACTGTTTATTCCCTTGTCCTGCCACG 60
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 TTGCTCCAAGAAGCAGCTCAGCTCGCCGTGCCCTGCAGCTCTACCGGCAGCATCATCATC 120
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 ACCTGTATCCCCGAAAGGCAGCTTCTTCCGGTTGTAGCTACCGAGCTACCAGTACCACCC 180
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 ACCCTGAGAGCCAAGAAATGGCGGCCTGATTGGGCCCCCCCGTGAGCTCCGAATCCGCCG 240
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 GCGGCCAACTGCCGGATCTCCTCGCAGCCAGCGCGCCGCCGGGAGGGACGGAGATTGGCG 300
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 GCGGAGGAGGGGAGGTGTCCAGGCCAGGTCAGGTGGGATCTCCGCTTGCTTCGCCGGCTT 360
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 AGAAATCGGCATCTTTGTCTTGCAGATGTGAGCTTGCAAGTGTGGGGTCTCCGCGTCTTT 420
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 TTCCAGGTGGCAGGCATGGAGGTGAGGCTGCTGCTTCTAGTGTTCATATGTCTGCATGCT 480
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 CTTCTTTGGGCGGCTTCGGCTCAGCAGCCAGAGGAGGCGACGGTCATAGTTAAGGGATCG 540
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 ACAAAAATCGCTGAAACGAATAAAAATTATATATGTGCTACAATCGATTGGTGGCCACCA 600
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 GAGAAGTGTAACTATAATCAGTGTCCATGGGGCCAATCGTCAATTCTAAACTTGGATTTG 660
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 GATCATCCCTTCCTGGCTCAAGCCATTCAAGCATTTGATAATTTGAGGATTAGACTGGGA 720
consensus_11890#3 ----------------------CCATTCAAGCATTTGATAATTTGAGGATTAGACTGGGA 38
consensus_11890#1 --------AGAGGACGAGACAAGGGGTCGGACGANGGCGGCGTTCCGGCCATGAGCCCTG 52
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ---------GCGCNCCGCTGGAACTNTCGGACGACGGCGGCGTTCCGGCCATGAGCCCTG 51
consensus_11890#2 -------------------------------------AGGTTATTTTATCATTATTAGTC 23
consensus_11890#0 GGCTCTTTGC----AAGACCGAGTTGTTTATGATGTGGGTACAAACAGTCCATGCGCCCC 776
consensus_11890#3 GGCTCTTTGC----AAGACCGAGTTGTTTATGATGTGGGTACAAACAGTCCATGCGCCCC 94
consensus_11890#1 CGCTCGTTGCTGTCAACTTGCCGGTGTACCTGGCACCGACATCGATCGCCTTTGTAGTTC 112
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 CGCTCGTTGCTGTCAACTCGCCGGTGTACCTGGCACCGACATCGATCGCCTTTGTAGTTC 111
consensus_11890#2 CACTTTTTGTAATTAATAAGCAAAATTCATCAATGGCGACGCCATGTTTTCAGGGAATGA 83
consensus_11890#0 GTTCACAAAC--ATGTCAAATGGTTTATTTGGTTTCTCA-----GATGGTTGTCTAAGCA 829
consensus_11890#3 GTTCACAAAC--ATGTCAAATGGTTTATTTGGTTTCTCA-----GATGTNTTTTTAAGCA 147
consensus_11890#1 TTCCAATGTTTGAGGCCAAGGCCTGTTCTTGAGTGATCAATCTTGCCTTCTTGTTGAGTA 172
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 TTCCAATGTTTGAGGCCAAGGCCTGTTNTTGAGTGATCAATCTTGCCTTCTTGTTGAGTA 171
consensus_11890#2 TGCCCACCTTATAAGGAAGATATTAGATCCAAAGTATT--------TAGATCGTTCAGAA 135
consensus_11890#0 TGG-ATAGGTGGGACAAACTGAATGCTCTATTCCAAAAAACAGGTGCAATTATCACATTT 888
consensus_11890#3 TGG-ATAGGTGGGACAAACTGAATGCTCTATTCCAAAAAACAGG---------------- 190
consensus_11890#1 TTACGCCCTTAGAATGTTCCATTTGTTCTTTTCTGGTTTAAATA---------------- 216
consensus_11890#5 ---------------GTTCCCTTTGTTCTTTTTTGGTTTAAATA---------------- 29
consensus_11890#4 TTACGCCCTTANAATGTTCCATTTGTTCTTTTCTGGTTTAAANA---------------- 215
consensus_11890#2 GATACTTATAGGGATATGCAACTCACCCTTCAAAGGCATGGAACATGGGCTTCTGCCTGG 195
* ** *
consensus_11890#0 GGTCTGAATGCGCTCTATGGGAGGTACAATGTCCGTCGTTCTTTCTGGGCTAGCAAATGG 948
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 GTCAGCGAAAGCGGAGGTGTATTCAACAATG----------------------------- 226
consensus_11890#0 AACTCTACAAATGCATATAATTTTGTAAAATACACAATCTCAAAGGGATATCCAGTTGAC 1008
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 TCATGGGAATATGGTAATGAACTGAGCGGGCATGGAATTGG-GGCAAGAGTCGATG--CT 1065
consensus_11890#3 -------------GTAATGAACTGAGCGGGCATGGAATTGG-GGCAAGAGTCGATG--CT 234
consensus_11890#1 -------------GCAAAACCCTTGGAATGTAAGCCTTTAG-AATGTAAAAGAATGGAGT 262
consensus_11890#5 -------------GCCAAACCCTTGGGATGTAAGCCTTTAG-AATGTTAAAGAATGGAGT 75
consensus_11890#4 -------------GCAAAACCCTTGGAATGTAAGCCTTTAG-AATGTAAAAGAATGGAGT 261
consensus_11890#2 -------------GCGGTGAACTTGTGTCAAACACTTTCATCAATAGCATCTGGTATCTT 273
* ** * * * * *
consensus_11890#0 ACACTGTATGGAA-AAGATGCAATTGAACTTAAATCCATCTTTCAACAGTTGTACAAGGC 1124
consensus_11890#3 ACACTGTATGGAA-AAGATGCAATTGAACTTAAATCCATCTTTCAACAGTTGTACAAGGC 293
consensus_11890#1 GTTCCATTTGTTC-GTTTTCTGGTTTGAATAGCAAA-GCCTTTAGAATGTAAAAGAATGT 320
consensus_11890#5 GTTCCCTTTGTTC-GTTTTCTGGTTTGAATAACAAA-GCCTTTAGGATGTTAAAGAATGT 133
consensus_11890#4 GTTCCATTTGTTC-GTTTTCTGGTTTGAATAACAAA-GCCTTTAGAATGTAAAAGAATGT 319
consensus_11890#2 GATCAGCTTGGAATGGCATCTAAGTACAATACAAAA--ATATTCTGCAGGCAGACTCTGA 331
* ** * * * * * ** * * *
consensus_11890#0 ACCACTCTCCCAGCCATCCCTGTTAG-CCCCTGGAGGATTCTTTGATCAGCAGTGGTACA 1183
consensus_11890#3 ACCACTCTCCCAGCCATCCCTGTTAG-CCCCTGGAGGATTCTTTGATCAGCAGTGGTACA 352
consensus_11890#1 ACCAAAACCCTTCGAATACAAGAAGGATCCCAAGAATTTACCTTAGAATGCATAGAACGA 380
consensus_11890#5 TCCAAAACCCTTCGGATTCAAGAAGGGTCCCAAGGATTTTCCT----------------- 176
consensus_11890#4 ACCAAAACCCTTCGAATACAANAAGGATCNCAAGAATTTNCCTTAAAAAAAAAAAAAAAA 379
consensus_11890#2 TTGGTGGCCACTATGGTCTACTTGACACCCAAACTTTTTTGCCAAATCCTGATTACTATA 391
* * * *
consensus_11890#0 CTCAGCTACTTCAGACTTCTGGTCATGGCGTTGTCAGTGCTTTGACGCATCATATTTATA 1243
consensus_11890#3 CTCAGCTACTTCAGACTTCTGGTCATGGCGTTGTCAGTGCTTTGACGCA----------- 401
consensus_11890#1 TTACAAGAATTTAAACATATTGTAAGTAAATTACAAGAATGTAAACAGATTTTGAGTAAA 440
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 AAAAAAAAAAA------------------------------------------------- 390
consensus_11890#2 GTGCTCTACTATGG-CATCGGCTTATGGGCAGGGAAG----------------------- 427
consensus_11890#0 ATCTTGGTGGAGGGAATGATGCCCACCTTATAAGGAAGATATTAGATCCAAAGTATTTAG 1303
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 TAACAATTGAATTGTGAGCAAAAAAAAAAAAAAA-------------------------- 474
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 ATCGTTCAGAAGATACTTATAGGGATATGCAACTCGCCCTTCAAAGGCATGGAACATGGG 1363
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 CTTCTGCCTGGGTCAGCGAAAGCGGAGGTGTATTCAACAATGGCGGTGAACTTGTGTCAA 1423
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 ACACTTTCATCAATAGCATCTGGTATCTTGATCAGCTTGGAATGGCATCTAAGTACAATA 1483
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 CAAAAATATTCTGCAGGCAGACTCTGATTGGTGGCCACTATGGTCTACTTGACACCCAAA 1543
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 CTTTTTTGCCAAATCCTGATTACTATAGTGCTCTACTATGGCATCGGCTTATGGGCAGGG 1603
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 AAGTTCTTTCAGTTGATATCAATGCGCCGCGTAAACTGCGTGCTTATGCTCATTGCAGGA 1663
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 AACAGCAGCAAGGAATCACCCTCCTGTTGATCAACCTGAGCAATACCACCGGATACAACG 1723
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 TCACCCTCCAGAATGACATCAATGTCAACCTTGACAAAACAGCCAGCCTTCATAAGCACA 1783
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 ATTCTTTCTCACACAGCCTCAGAAGAGCGGTTTCATGGCTGGGGCGCAAGCCGTCAAGCG 1843
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 ACGTCGCGAGGAGGGAGGAGTACCACCTGACGGCCAAGGACGGCGACCTCCAGAGCAAGA 1903
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 CGATGCTGCTCAACGGCGCACCGCTGGAACTCTCGGACGACGGCGGCGTTCCGGCCATGA 1963
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 GCCCTGCGCTCGTTGCTGTCAACTCGCCGGTGTACCTGGCACCGACATCGATCGCCTTTG 2023
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 TAGTTCTTCCAATGTTTGAGGCCAAGGCCTGTTCTTGAGTGATCAATCTTGCCTTCTTGT 2083
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 TGAGTATTACGCCCTTAGAATGTTCCATTTGTTCTTTTCTGGTTTAAATAGCAAAACCCT 2143
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 TGGAATGTAAGCCTTTAGAATGTAAAAGAATGGAGTGTTCCATTTGTTCGTTTTCTGGTT 2203
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 TGAATAACAAAGCCTTTAGAATGTAAAAGAATGTACCAAAACCCTTCGAATACAAGAAGG 2263
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 ATCACAAGAATTTACCTTAGAATGCATAGAACGATTACAAGAATTTAAACATATTGTGAG 2323
consensus_11890#3 ------------------------------------------------------------
consensus_11890#1 ------------------------------------------------------------
consensus_11890#5 ------------------------------------------------------------
consensus_11890#4 ------------------------------------------------------------
consensus_11890#2 ------------------------------------------------------------
consensus_11890#0 TAAATTACAAGAATGTAAACAGGTTTTGAGTAAATAACAATTG 2366
consensus_11890#3 -------------------------------------------
consensus_11890#1 -------------------------------------------
consensus_11890#5 -------------------------------------------
consensus_11890#4 -------------------------------------------
consensus_11890#2 -------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||