cluster # 11891

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Oryza sativa
cluster # 11891 cluster # 11891 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11891#0 length = 1120 sequences # 3
consensus_11891#1 length = 1026 sequences # 1

consensus_11891#2 length = 616 sequences # 1
consensus_11891#3 length = 614 sequences # 4

consensusID : consensus_11891#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1120
fasta sequence

                              [CGATCCCCTTCTGAAGGGCTTTATGTTATTCCACCTATCCAAACAAGCCCTTAATAGTTGAAGCAAACAACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATACATCTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGATAAGAGAGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTCATCAACACACTTGCAAGAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCACTTTCTTGGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAATACGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGTCACAAGATGCGCACTCAGGTTCATCAAATGGATCAACATTATTCCTGCATCAGTGTAATACATGAACATGTCAGTTGGTCTTTCCCGCAATGTATGCAGGCAAGAGTTCTATTGTATCTTTTGAGACACCCATTGGGCCTCATGCCAACAGATGTTCATAATTATACCCCAATAGGAACAACCATGATCAATCAACCTTTCAATATGTACTATTGGACCATCTGCGTAACCACTATACTTTAGTAGTATTTATTCTTTTCTCATAAGTTATTCATAGGGAAAACCACTTCAAGCGTAGCATTATCCTGTTCATCTTCAACCAACCATTAAGCATGGGTTCCAGAATTCCACTAGATATGTAGTGTTCAATTATAAATAATGACAGTATTAATCATATTTCACTCACTACGGTCAGAATATATCTAGATCGCCATGATCAAAATCTTTAAGACCCAATCTACCATCCACTTTGAAGTTTATATGGGAAACCCCAAGTTAGGGTAGTCAGAGATACAAGAGTAGTGTAGCTACACAAAAAGCTAACCCTATCAGCATTGGAATTAAATTTGAAGATATACTGATCATTCATTTATTTTTTTCAGGAATA]

[+] EMBL CB661108             [CGATCCCCTTCTGAAGGGCTTTATGTTATTCCACCTATCCAAACAAGCCCTTAATAGTTGAAGCAAACAACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATACATCTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGATAAGAGAGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTCATCAACACACTTGCAAGAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCACTTTCTTGGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAATACGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGTCACAAGATGCGCACTCAGGTTCATCAAATGGATCAACATTATTCCTGCATCAGTGTAATACATGAACATGTCAGTTGGTCTTTCCCGCAATGTATGCAGGCAAGAGTTCTATTGTATCTTTTGAGACACCCATTGGGCCTCATGCCAACAGATGTTCATAATTATACCCCAATAGGAACAACCATGATCAATCAACCTTTCAATATGTACTATTGGACCATCTGCGTAACCACTATACTTTAGTAGTATTTATTCTTTTCTCATAAGTTATTCATAGGGAAAACCACT                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL AU057260             [                               CACCTATCCAAACAAGCCCTTAATAGTTGAAGCAAACAANTACCACTCACGGTTTGCCCTACAATANTATTTACATAATNCATCTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTTNTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGATAAGAGAGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTCATCAACACACTTGCAAGAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCACTTCCTTGGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAATACGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB661107             [                                                                                                                                                                                                                                                                                                                                       CATAGTATATGCACTTTC TGGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAATACGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGTCACAAGATGCGCACTCAGGTTCATCAAATGGATCAACATTATTCCTGCATCAGTGTAATACATGAACATGTCAGTTGGTCTTTCCCGCAATGTATGCAGGCAAGAGTTCTATTGTATCTTTTGAGACACCCATTGGGCCTCATGCCAACAGATGTTCATAATTATACCCCAATAGGAACAACCATGATCAATCAACCTTTCAATATGTACTATTGGACCATCTGCGTAACCACTATACTTTAGTAGTATTTATTCTTTTCTCATAAGTTATTCATAGGGAAAACCACTTCAAGCGTAGCATTATCCTGTTCATCTTCAACCAACCATTAAGCATGGGTTCCAGAATTCCACTAGATATGTAGTGTTCAATTATAAATAATGACAGTATTAATCATATTTCACTCACTACGGTCAGAATATATCTAGATCGCCATGATCAAAATCTTTAAGACCCAATCTACCATCCACTTTGAAGTTTATATGGGAAACCCCAAGTTAGGGTAGTCAGAGATACAAGAGTAGTGTAGCTACACAAAAAGCTAACCCTATCAGCATTGGAATTAAATTTGAAGATATACTGATCATTCATTTATTTTTTTCAGGAATA]




>consensus_11891#0
CGATCCCCTTCTGAAGGGCTTTATGTTATTCCACCTATCCAAACAAGCCCTTAATAGTTG
AAGCAAACAACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATACATCTTAAA
CCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTG
TTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGATAAGAGAGAAT
CCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTCATCAACACACTTGCAAGAATTTCCT
CCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCACTTTCTTGGACACTGCCCAA
CAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAG
TGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAATACGGGCATCCAG
TGCCAATGCATAGAAGTTCATTCACAAATATGTCACAAGATGCGCACTCAGGTTCATCAA
ATGGATCAACATTATTCCTGCATCAGTGTAATACATGAACATGTCAGTTGGTCTTTCCCG
CAATGTATGCAGGCAAGAGTTCTATTGTATCTTTTGAGACACCCATTGGGCCTCATGCCA
ACAGATGTTCATAATTATACCCCAATAGGAACAACCATGATCAATCAACCTTTCAATATG
TACTATTGGACCATCTGCGTAACCACTATACTTTAGTAGTATTTATTCTTTTCTCATAAG
TTATTCATAGGGAAAACCACTTCAAGCGTAGCATTATCCTGTTCATCTTCAACCAACCAT
TAAGCATGGGTTCCAGAATTCCACTAGATATGTAGTGTTCAATTATAAATAATGACAGTA
TTAATCATATTTCACTCACTACGGTCAGAATATATCTAGATCGCCATGATCAAAATCTTT
AAGACCCAATCTACCATCCACTTTGAAGTTTATATGGGAAACCCCAAGTTAGGGTAGTCA
GAGATACAAGAGTAGTGTAGCTACACAAAAAGCTAACCCTATCAGCATTGGAATTAAATT
TGAAGATATACTGATCATTCATTTATTTTTTTCAGGAATA

consensusID : consensus_11891#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1026
fasta sequence

                              [AATTTAATGGTTTGTTTGGTTCCCTTCGGATTGGCAGGCATTTAGTCAATTTCGATCCCATTCTGAAGGGGTTGATGTTATTCCACCTATCCAAACAAGCCCTTAATAGTTGAAGCAAACAACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATACATCTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGATAAGAGAGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTCATCAACACACTTGCAAGAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCACTTTCTTGGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAATACGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGTCACAAGATGCGCACTCAGGTTCATCAAATGGATCAACATTATTCCAGATAATATCTCATAGGCCTCAAGAACTCTTCTCATTATTAGATCTGCATTCTCTGTGTCCTTGCAAACATCTGGATGGAATTCCTTTACCCGGGCGCGGAAGGCCGCCTTGAGCTGCGCGGCGGTGTAGGAGGCCGAGGCGTCGAGTCCCAGAATCTGCAAAGGCGTAGCGAGCGGGTCCAGTATCCCCCTCCCCTCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCTTCGCGCCAGGACGCGCCGAAGCCGCCTCGCCGCGCCACGCCGCGGCGACGGCACCCCTCTCGTCCCGCCGTAGGACCAGCCGCCGCCATGGTCGCGCGCGGCGCGAAGCAGGAGGCGGAGGCGGAGGCCACCGGAGCCGCCATGCGCGCGCGCGCGACACGTGCTCGGCTGCCTGTGCCGTGCTG]

[-] EMBL AK064931             [AATTTAATGGTTTGTTTGGTTCCCTTCGGATTGGCAGGCATTTAGTCAATTTCGATCCCATTCTGAAGGGGTTGATGTTATTCCACCTATCCAAACAAGCCCTTAATAGTTGAAGCAAACAACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATACATCTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGATAAGAGAGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTCATCAACACACTTGCAAGAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCACTTTCTTGGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAATACGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGTCACAAGATGCGCACTCAGGTTCATCAAATGGATCAACATTATTCCAGATAATATCTCATAGGCCTCAAGAACTCTTCTCATTATTAGATCTGCATTCTCTGTGTCCTTGCAAACATCTGGATGGAATTCCTTTACCCGGGCGCGGAAGGCCGCCTTGAGCTGCGCGGCGGTGTAGGAGGCCGAGGCGTCGAGTCCCAGAATCTGCAAAGGCGTAGCGAGCGGGTCCAGTATCCCCCTCCCCTCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCTTCGCGCCAGGACGCGCCGAAGCCGCCTCGCCGCGCCACGCCGCGGCGACGGCACCCCTCTCGTCCCGCCGTAGGACCAGCCGCCGCCATGGTCGCGCGCGGCGCGAAGCAGGAGGCGGAGGCGGAGGCCACCGGAGCCGCCATGCGCGCGCGCGCGACACGTGCTCGGCTGCCTGTGCCGTGCTG]




>consensus_11891#1
AATTTAATGGTTTGTTTGGTTCCCTTCGGATTGGCAGGCATTTAGTCAATTTCGATCCCA
TTCTGAAGGGGTTGATGTTATTCCACCTATCCAAACAAGCCCTTAATAGTTGAAGCAAAC
AACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATACATCTTAAACCCTCTAA
CTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTT
TTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGATAAGAGAGAATCCAGAACT
GCTGCTTCAGAGAGGTCGTATGGAGTCATCAACACACTTGCAAGAATTTCCTCCAAAATA
GTACGTTGGCAGGGCGTGACATAGTATATGCACTTTCTTGGACACTGCCCAACAGCAAGT
TGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCG
GCAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAATACGGGCATCCAGTGCCAATG
CATAGAAGTTCATTCACAAATATGTCACAAGATGCGCACTCAGGTTCATCAAATGGATCA
ACATTATTCCAGATAATATCTCATAGGCCTCAAGAACTCTTCTCATTATTAGATCTGCAT
TCTCTGTGTCCTTGCAAACATCTGGATGGAATTCCTTTACCCGGGCGCGGAAGGCCGCCT
TGAGCTGCGCGGCGGTGTAGGAGGCCGAGGCGTCGAGTCCCAGAATCTGCAAAGGCGTAG
CGAGCGGGTCCAGTATCCCCCTCCCCTCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGC
TTCGCGCCAGGACGCGCCGAAGCCGCCTCGCCGCGCCACGCCGCGGCGACGGCACCCCTC
TCGTCCCGCCGTAGGACCAGCCGCCGCCATGGTCGCGCGCGGCGCGAAGCAGGAGGCGGA
GGCGGAGGCCACCGGAGCCGCCATGCGCGCGCGCGCGACACGTGCTCGGCTGCCTGTGCC
GTGCTG

consensusID : consensus_11891#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence

                              [TGGGCAGGCCATTTAGTCCATTTCGATCCCATTCTGAAGGGGTTGATGTTATTCCACCTATCCAAAAAGCCCTTAATAACAAGCCCTTAATAGTTGAAGCAAACAATACCACTCACGGTTTGGCCTACAATAATATTTACNTAATACATCTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGCATAAGCAGCAGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTCCATCAACCACACTTGCAAGCAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCCACTTTCTTGGACACTGNCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCGGAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAATACGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGCGGACCGCGTGGGTCGACCCGGGGAATTTCCGGAACCGGTACCCTGCAGGGCGTAACCAGCTT]

[-] EMBL BQ907429             [TGGGCAGGCCATTTAGTCCATTTCGATCCCATTCTGAAGGGGTTGATGTTATTCCACCTATCCAAAAAGCCCTTAATAACAAGCCCTTAATAGTTGAAGCAAACAATACCACTCACGGTTTGGCCTACAATAATATTTACNTAATACATCTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGCATAAGCAGCAGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTCCATCAACCACACTTGCAAGCAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCCACTTTCTTGGACACTGNCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCGGAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAATACGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGCGGACCGCGTGGGTCGACCCGGGGAATTTCCGGAACCGGTACCCTGCAGGGCGTAACCAGCTT]




>consensus_11891#2
TGGGCAGGCCATTTAGTCCATTTCGATCCCATTCTGAAGGGGTTGATGTTATTCCACCTA
TCCAAAAAGCCCTTAATAACAAGCCCTTAATAGTTGAAGCAAACAATACCACTCACGGTT
TGGCCTACAATAATATTTACNTAATACATCTTAAACCCTCTAACTGTGCTATAGAGTGGA
TCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTTTTCGGCTTCTTGTACCT
GTTATTCTCAAACATTGCTTTTGCATAAGCAGCAGAATCCAGAACTGCTGCTTCAGAGAG
GTCGTATGGAGTCCATCAACCACACTTGCAAGCAATTTCCTCCAAAATAGTACGTTGGCA
GGGCGTGACATAGTATATGCCACTTTCTTGGACACTGNCCAACAGCAAGTTGGACATTGT
AGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCGGAAATGCAAA
CGCGTGAGGTGCCCTTTTAACACAAGAATACGGGCATCCAGTGCCAATGCATAGAAGTTC
ATTCACAAATATGCGGACCGCGTGGGTCGACCCGGGGAATTTCCGGAACCGGTACCCTGC
AGGGCGTAACCAGCTT

consensusID : consensus_11891#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 614
fasta sequence

                              [TTTTTTTTTTTTTTAGTCAATTTCGATCCCATTCTGAAGGGGTTGATGTTATTCCACCTATCCAAACAAGCCCTTAATAGTTGAAGCAAACAACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATA-CATCTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGATAAGAGAGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAG-TCATCAACACACTTGCAAGAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCACTTTCTTGGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACAC-AAGAATA-CGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGTCACAAGATGGGCACTCAGGTTCATCAAATGGATCAACATTATTCCTCATAGGCCTCAAGAACTCTTCTCATTATTAGA]

[-] EMBL AU057261             [TTTTTTTTTTTTTTAGTCAATTTCGATCCCATTCTGAAGGGGTTGATGTTATTCCACCTATCCAAACAAGCCCTTAATAGTTGAAGCAAACAACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATA CATCTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGATAAGAGAGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAG TCATCAACACACTTGCAAGAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCACTTCCTTGGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAG                                                                                                                                                                             ]
[-] EMBL BI796578             [    TTTTTTTTTTAGTCAATTTCGATCCCATTCTGAAGGGGTTGATGTTATTCCACCTATCCAAACAAGCCCTTAATAGTTGAAGCAAACAACTACCACTCACGG TTGCCCTACAATAATATTTACATAATA CATCTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGA TTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGATAAGAGAGAATCCAGAACTGGTGCTTCAGAGAGGTCGTATGGAG TCATCAACACACTTGCAAGAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCACTTTCTTGGACACTG CCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTG CCTTTTAACACAAAGAATACCGGGCATCCAGTGC                                                                                                            ]
[+] EMBL CB663505             [               ggCAAGTTCGATCCCATTCTGAAGGGGTTGATGTTATTCCACCTATCCAAACAAGCCCTTAATAGTTGAAGCAAACAACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATAGCATCTTAAACCCTCTAACTGTGCTATAAAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTTTTCCGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGGTAAGAGAGAATCCAGAACTGCTGCTTCATAAAGGTCGTATGGAGATCATCAACACACTTGCAAGAATTTCCTCCAAAATAGAACGTTGGGAGGGCGTGACATACAATATGCACTTTCTTGGACACTGCCCAACAGCAAGTTGGACATTGGAGACATCATATGGACCTTGAAATGATGCATGGGCTGTACCAATGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACAC AAGAATA CGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGTCACAAGATGGGCACTCAGGTTCATCAAATGGATCAACATTATTCCTCATAGGCCTCAAGAACTCTTCTCATTATTAGA]
[-] EMBL CB663504             [                          TCCCATTCTGAAGGGGTTGATGTTATTCCACCTATCCAAACAAGCCCTTAATAGTTGAAGCAAACAACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATA CATCTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACGATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGATAAGAGAGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAG TCATCAACACACTTGCAAGAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCACTTTCTTGGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCATGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACAC AAGAATA CGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGTCACAAGATGCGCACTCAGGTTCATCAAATGGATCAACATTATTCCTCATAGGCCTCAAGAACTCTTCTCA        ]




>consensus_11891#3
TTTTTTTTTTTTTTAGTCAATTTCGATCCCATTCTGAAGGGGTTGATGTTATTCCACCTA
TCCAAACAAGCCCTTAATAGTTGAAGCAAACAACTACCACTCACGGTTTGCCCTACAATA
ATATTTACATAATACATCTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTC
AACATAATCAGAAGACGATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAA
CATTGCTTTTGATAAGAGAGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTCAT
CAACACACTTGCAAGAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATAT
GCACTTTCTTGGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTG
AGATGATGCATGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTT
AACACAAGAATACGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGTCACA
AGATGGGCACTCAGGTTCATCAAATGGATCAACATTATTCCTCATAGGCCTCAAGAACTC
TTCTCATTATTAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11891#1      AATTTAATGGTTTGTTTGGTTCCCTTCGGATTGGCAGGC-ATTTAGTCAATTTCGATCCC 59
consensus_11891#3      -----------------------------TTTTTTTTTT-TTTTAGTCAATTTCGATCCC 30
consensus_11891#2      ------------------------------TGGGCAGGCCATTTAGTCCATTTCGATCCC 30
consensus_11891#0      -----------------------------------------------------CGATCCC 7
                                                                            *******

consensus_11891#1      ATTCTGAAGGGGTTGATGTTATTCCACCTATCCAAA-------------CAAGCCCTTAA 106
consensus_11891#3      ATTCTGAAGGGGTTGATGTTATTCCACCTATCCAAA-------------CAAGCCCTTAA 77
consensus_11891#2      ATTCTGAAGGGGTTGATGTTATTCCACCTATCCAAAAAGCCCTTAATAACAAGCCCTTAA 90
consensus_11891#0      CTTCTGAAGGGCTTTATGTTATTCCACCTATCCAAA-------------CAAGCCCTTAA 54
                        ********** ** *********************             ***********

consensus_11891#1      TAGTTGAAGCAAACAACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATACAT 166
consensus_11891#3      TAGTTGAAGCAAACAACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATACAT 137
consensus_11891#2      TAGTTGAAGCAAACAA-TACCACTCACGGTTTGGCCTACAATAATATTTACNTAATACAT 149
consensus_11891#0      TAGTTGAAGCAAACAACTACCACTCACGGTTTGCCCTACAATAATATTTACATAATACAT 114
                       **************** **************** ***************** ********

consensus_11891#1      CTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACG 226
consensus_11891#3      CTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACG 197
consensus_11891#2      CTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACG 209
consensus_11891#0      CTTAAACCCTCTAACTGTGCTATAGAGTGGATCACATCCAGTCAACATAATCAGAAGACG 174
                       ************************************************************

consensus_11891#1      ATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTG-ATAAG 285
consensus_11891#3      ATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTG-ATAAG 256
consensus_11891#2      ATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTGCATAAG 269
consensus_11891#0      ATTTTGTTTCTCTTTTCGGCTTCTTGTACCTGTTATTCTCAAACATTGCTTTTG-ATAAG 233
                       ****************************************************** *****

consensus_11891#1      AG--AGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTC-ATCAAC-ACACTTGC 341
consensus_11891#3      AG--AGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTC-ATCAAC-ACACTTGC 312
consensus_11891#2      CAGCAGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTCCATCAACCACACTTGC 329
consensus_11891#0      AG--AGAATCCAGAACTGCTGCTTCAGAGAGGTCGTATGGAGTC-ATCAAC-ACACTTGC 289
                           **************************************** ****** ********

consensus_11891#1      AAG-AATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGC-ACTTTCTT 399
consensus_11891#3      AAG-AATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGC-ACTTTCTT 370
consensus_11891#2      AAGCAATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGCCACTTTCTT 389
consensus_11891#0      AAG-AATTTCCTCCAAAATAGTACGTTGGCAGGGCGTGACATAGTATATGC-ACTTTCTT 347
                       *** *********************************************** ********

consensus_11891#1      GGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCA 459
consensus_11891#3      GGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCA 430
consensus_11891#2      GGACACTGNCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCA 449
consensus_11891#0      GGACACTGCCCAACAGCAAGTTGGACATTGTAGTCATCATAGTGACCTTGAGATGATGCA 407
                       ******** ***************************************************

consensus_11891#1      TGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAA 519
consensus_11891#3      TGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAA 490
consensus_11891#2      TGTGCTGTACCAGTGTCATCGG-AAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAA 508
consensus_11891#0      TGTGCTGTACCAGTGTCATCGGCAAATGCAAACGCGTGAGGTGCCCTTTTAACACAAGAA 467
                       ********************** *************************************

consensus_11891#1      TACGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGTCACAAGATGCGCAC 579
consensus_11891#3      TACGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGTCACAAGATGGGCAC 550
consensus_11891#2      TACGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATG---CGGACCGCGTGG 565
consensus_11891#0      TACGGGCATCCAGTGCCAATGCATAGAAGTTCATTCACAAATATGTCACAAGATGCGCAC 527
                       *********************************************   *     * *   

consensus_11891#1      TCAGGTTCATCAAATGGATCAACATTATTCCAGATAATATCTCATAGGCCTCAAGAACTC 639
consensus_11891#3      TCAGGTTCATCAAATGGATCAACATTATTCC----------TCATAGGCCTCAAGAACTC 600
consensus_11891#2      GTCGACCCGGGGAATTTCCGGAACCGGTACC----------CTGCAGGGCGTAACCAGCT 615
consensus_11891#0      TCAGGTTCATCAAATGGATCAACATTATTCCTGCATCAGTGTAATACATGAACATGTCAG 587
                          *   *    ***      *     * **              *       *      

consensus_11891#1      TTCTCATTATTAGATCTGCATTC---TCTGTGTCCTTGCAAACATCTGGATGGAATTCCT 696
consensus_11891#3      TTCTCATTATTAGA---------------------------------------------- 614
consensus_11891#2      T----------------------------------------------------------- 616
consensus_11891#0      TTGGTCTTTCCCGCAATGTATGCAGGCAAGAGTTCTATTGTATCTTTTGA-GACACCCAT 646
                       *                                                           

consensus_11891#1      TTACCCGGGCGCGGAAGGCCGCCTTGAGCTGCGCGGCGGTGTAGGAGGCCGAGGC--GTC 754
consensus_11891#3      ------------------------------------------------------------
consensus_11891#2      ------------------------------------------------------------
consensus_11891#0      TGGGCCTCATGCCAACAGATGTTCATAATTATACCCCAATAGGAACAACCATGATCAATC 706
                                                                                   

consensus_11891#1      GAG-TCCCAGAATCTGCAAAGGCGTAGCGAGCGGGTCCAGTATCCCCC-------TCCCC 806
consensus_11891#3      ------------------------------------------------------------
consensus_11891#2      ------------------------------------------------------------
consensus_11891#0      AACCTTTCAATATGTACTATTGGACCATCTGCGTAACCACTATACTTTAGTAGTATTTAT 766
                                                                                   

consensus_11891#1      TCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCTTCGCGC-CAGGACGCGCCGAAGCCG 865
consensus_11891#3      ------------------------------------------------------------
consensus_11891#2      ------------------------------------------------------------
consensus_11891#0      TCTTTTCTCATAAGTTATTCATAGGGAAAACCACTTCAAGCGTAGCATTATCCTGTTCAT 826
                                                                                   

consensus_11891#1      CCTCGCCGCGCCACGCCGC---GGCGACGGCACCCCTCTCGTCCCGCCGTAGGACCAGCC 922
consensus_11891#3      ------------------------------------------------------------
consensus_11891#2      ------------------------------------------------------------
consensus_11891#0      CTTCAACCAACCATTAAGCATGGGTTCCAGAATTCCACTAGATATGTAGT-GTTCAATTA 885
                                                                                   

consensus_11891#1      GCCGCCATGGTCGCGCGCGGCGCGAAGCAGGAGGCGGAGGCGGAGGCCACCGGAGCCGCC 982
consensus_11891#3      ------------------------------------------------------------
consensus_11891#2      ------------------------------------------------------------
consensus_11891#0      TAAATAATGACAGTATTAATCATATTTCACTCACTACGGTCAGAATATATCTAGATCGCC 945
                                                                                   

consensus_11891#1      ATGCGCGCGCGCGC-GACACGTGCTCGGCTGCCTGTGCCGTGCTG--------------- 1026
consensus_11891#3      ------------------------------------------------------------
consensus_11891#2      ------------------------------------------------------------
consensus_11891#0      ATGATCAAAATCTTTAAGACCCAATCTACCATCCACTTTGAAGTTTATATGGGAAACCCC 1005
                                                                                   

consensus_11891#1      ------------------------------------------------------------
consensus_11891#3      ------------------------------------------------------------
consensus_11891#2      ------------------------------------------------------------
consensus_11891#0      AAGTTAGGGTAGTCAGAGATACAAGAGTAGTGTAGCTACACAAAAAGCTAACCCTATCAG 1065
                                                                                   

consensus_11891#1      -------------------------------------------------------
consensus_11891#3      -------------------------------------------------------
consensus_11891#2      -------------------------------------------------------
consensus_11891#0      CATTGGAATTAAATTTGAAGATATACTGATCATTCATTTATTTTTTTCAGGAATA 1120