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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1627 fasta sequence
[CGTCAATCCCTATCTCCATTTGGATCTCTCCCTCTCGACTCCATGTTGCCGCCGCCGCCGCTGCGTTCCGTTGCGGCAAGCGGCGACGGGTGGCTCTCCCTCTCCGTCTCCACGGAGTCCACGGGGTCAGGAGAGAGCAACAAGCGCCTCAAGCGAGGCGGCGGCGGCGGATCGGTCGAGGACGATGGGTTCCCCCTCCACGACGAGGTCCTCCTCCTCGTGTTTGCGGCTAGCTCGCTGGATCTTCACGACCTCGTCCGGTGCACCGCCACTTGCAGGCGGTGGCGCCGCCTCGTCACCGGCAACGCGGAGTACATCTGCCGCTCCATGCTGCCCTCCAGCCGCCTCATCCGCGACCTCGCCGTCGGCTTCTTCCACCAGAGCCACGAGGACGAATCGTCTTCCTCTGTCGTGCCGCCTCGGTTCGTCCCGTTGCCCTCGGCCTCCTCCAGGTTCGGCGGCGGCGAGCTTGACAGGGTGCTCGACAACCCCGGCCTCTTCAAGAACTCCCGCCTCGTCGCATCACGGAAAGGCCGCCTCGTCGTCGAGCTCCGCCGCGCCTCCCGTGCCGCCGCCCTTAGGCTCGTCGTGTGCAACCCCATGACCGGTGACATGTCCGTCCTCCCCGTCCTCTCCGGGAAGGACAGGCCCGGGCTCTACGCGTGCGCGCTGCTCACCGCCGACGACCTTCAGGACTCCGCCGATCCGCTCCCACCGGGTCCCGCCGCCTTCCGCCTGGTGGTCCTCTACAAGCGCCGCAGCTTCACGGCGTGCCGGTCCTACTCGTCGGACACCAATGCCTGGAGCACCGAGCGCAAGCTATCCGGCGTCAAGATCGGCGGGAAGCGCCTGGGCGACATGGCCGCCGGTGTGACCTTCCGCGGCCGCGTGTTCTGGCTGGTGAACAGCGTGGTGTTCGTCCTCCACTTGGACACGCTGGTGGCGACCACCGAGAACATCTCATGGCATTGGAGGTGGAACGGCAAGCCATGCTTCTGCCTCGGTGACCCGGTGCCAAACCGCCGTCTCGCCGTCTCGCCGGACGGACGTCTCTGCGTGGTGCAGGTGGGTCGAAACTTGAGGACCTACAACCCGGTGATCAACGTCTTCGCTCGCCATGACAGTGGCGGCTGCAATGGGAGCACGGCGCAGAAGATCAGGTGGAAGGTGGAGGAGGGCACGACGTGGAGCTGAGCCACCTGATTCCATTGGCGAACGTGAAGAGGGTTTGTCTGAGGGGCGTCTGCGAGAAGAGCGGGCTCATCTTCCTCGCCATCGGCGCAGACATGTACGCCAAGAAACCGGACCTGGCGCTGTACGCGCTGGACATGGAGAAGAAGGAGGCGAGGCTGGTGCCGGCGCCCCCGGGCCGCTGCTGCGTTCGCCGGTCGTCGTGGAGCTTCTTCGGGTACGAGTTGGACCGTGTGGACTACCTCGCCTCCCTCGCCGGTGGCGATTCCACCGCTAGATGATGGAACAAGCATCCATCTCTGCACTGAGGTAAGGAGAAGAAATTTGGGTCAGATTTTACTGTTGTCACCTGCTGAAGACAGCACTGTAGCTCGTCGGAAAAAACCAAATCAGGCATTATGAAACATATTTTCATACATCTTAATTACATCATATT]
[+] EMBL AK107248 [CGTCAATCCCTATCTCCATTTGGATCTCTCCCTCTCGACTCCATGTTGCCGCCGCCGCCGCTGCGTTCCGTTGCGGCAAGCGGCGACGGGTGGCTCTCCCTCTCCGTCTCCACGGAGTCCACGGGGTCAGGAGAGAGCAACAAGCGCCTCAAGCGAGGCGGCGGCGGCGGATCGGTCGAGGACGATGGGTTCCCCCTCCACGACGAGGTCCTCCTCCTCGTGTTTGCGGCTAGCTCGCTGGATCTTCACGACCTCGTCCGGTGCACCGCCACTTGCAGGCGGTGGCGCCGCCTCGTCACCGGCAACGCGGAGTACATCTGCCGCTCCATGCTGCCCTCCAGCCGCCTCATCCGCGACCTCGCCGTCGGCTTCTTCCACCAGAGCCACGAGGACGAATCGTCTTCCTCTGTCGTGCCGCCTCGGTTCGTCCCGTTGCCCTCGGCCTCCTCCAGGTTCGGCGGCGGCGAGCTTGACAGGGTGCTCGACAACCCCGGCCTCTTCAAGAACTCCCGCCTCGTCGCATCACGGAAAGGCCGCCTCGTCGTCGAGCTCCGCCGCGCCTCCCGTGCCGCCGCCCTTAGGCTCGTCGTGTGCAACCCCATGACCGGTGACATGTCCGTCCTCCCCGTCCTCTCCGGGAAGGACAGGCCCGGGCTCTACGCGTGCGCGCTGCTCACCGCCGACGACCTTCAGGACTCCGCCGATCCGCTCCCACCGGGTCCCGCCGCCTTCCGCCTGGTGGTCCTCTACAAGCGCCGCAGCTTCACGGCGTGCCGGTCCTACTCGTCGGACACCAATGCCTGGAGCACCGAGCGCAAGCTATCCGGCGTCAAGATCGGCGGGAAGCGCCTGGGCGACATGGCCGCCGGTGTGACCTTCCGCGGCCGCGTGTTCTGGCTGGTGAACAGCGTGGTGTTCGTCCTCCACTTGGACACGCTGGTGGCGACCACCGAGAACATCTCATGGCATTGGAGGTGGAACGGCAAGCCATGCTTCTGCCTCGGTGACCCGGTGCCAAACCGCCGTCTCGCCGTCTCGCCGGACGGACGTCTCTGCGTGGTGCAGGTGGGTCGAAACTTGAGGACCTACAACCCGGTGATCAACGTCTTCGCTCGCCATGACAGTGGCGGCTGCAATGGGAGCACGGCGCAGAAGATCAGGTGGAAGGTGGAGGAGGGCACGACGTGGAGCTGAGCCACCTGATTCCATTGGCGAACGTGAAGAGGGTTTGTCTGAGGGGCGTCTGCGAGAAGAGCGGGCTCATCTTCCTCGCCATCGGCGCAGACATGTACGCCAAGAAACCGGACCTGGCGCTGTACGCGCTGGACATGGAGAAGAAGGAGGCGAGGCTGGTGCCGGCGCCCCCGGGCCGCTGCTGCGTTCGCCGGTCGTCGTGGAGCTTCTTCGGGTACGAGTTGGACCGTGTGGACTACCTCGCCTCCCTCGCCGGTGGCGATTCCACCGCTAGATGATGGAACAAGCATCCATCTCTGCACTGAGGTAAGGAGAAGAAATTTGGGTCAGATTTTACTGTTGTCACCTGCTGAAGACAGCACTGTAGCTCGTCGGAAAAAACCAAATCAGGCATTATGAAACATATTTTCATACATCTTAATTACATCATATT]
consensusID : consensus_119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1481 fasta sequence
[GTCAATCGCGATCTCCCTTCTGTTATCCCCCTCTCGTCTCGATGTCATCGCCGCCGCCGCCGCCGCCGCCGTGTCCTGCTGCGGCGTGCGACGACGGGTGGCTCTCCCTGTCCGTCTCGACGGTGTCGGGAGAGAGCAATCAAAAGCGCCTCAAGCGAGGAGGCGGAGGAGGTGGTGGAGGGGTCGGCGGCGGAGCGGTCGAGGATGATGGGTGCCCCCTCCACGACGAGGTCCTCCTCCTCGTGTTCGCGGAATGTTCGCTGGAGACAGACGATCTCGTCCGGTGCGCCGCCACCACGGTTCATCCCGTTGCCCTCCTACTCCTCCAGGTTCGCCGGCGGAGGCGAGCTCGACAAGGTGTTCGACAGCGGCCTCTTGAGCAACTCCCGCCTCATCGCGTCGCGCAAGGGCCTCCTCGTCCTCGAGCTCCGCCGCTCCTCGCGCGCCGCGGCCGTCAGGCTCGTCGTGTGCAACCCCATGACCGGGGACATGGCCACCCTCCCCATCCTCGCCGGGAAGGACAGGCCCGGGCACTACGCGTGCGCGCTAATCACCTTCGACGACCACGAGGGCGCGCCGGATCGGCTCGGCTTCGTCCATGACCCCGCCGCGTTCCGCCTGCTCCTCGTCTACAAGCGCCGCAACTTCACGGCGTGCCGATCCTACTGGTCGGACACCAAGGCCTGGGATGCGGAGGGCAAGCTGTCCGGTGCCAAGATCGGCGGCAGGCGCCTCGGCGAGATGACCGGCGCGGTGGCCGTCCGCGGCTCCGTGTTCTGGCTGCTAAAGAACCTGCTGTTCGTCGTCCGCCTCGGCGCGCTGAAGGCTACCACCGAGACCTTCCCATCAAAATGGTGCAGCAAGCTCTGCTTCTGCTACGGCAGCCCGGTGCAGAACCGCCAGCTCGCCGTCACGCCGGACGGCCGGCTCTGCGCCGTGCAGGTGGACCGACACGTGACGAGCAACAACACCGTGAGGATCAACGTCATCTCCCGCCACGACGGCTACGGCCCGCCGACATGGGAGTGCGACAATGCGCGCGACGTGGAGCTCAACCGCGTGCTGCCCATGGCGAACGTGAGGAGGGTTTGCCTGAGGGGCGTGTGCGAGAGGAGCGGGGTCGTCTTCCTCGCCATCGGCACCGACTTGTACAACCAGCAGCCGGACCTGGCGCTCTACGCGCTGGACATGGACAAGAAGGAGGCACGGAAGGTGGCGGCGCCGCCGGGCCACTGCCGCCGGTTGTCGTCGAGCTTCTTCGGCTACGAGATGGACCGTGTGGCCTACCTCGCCTCCCTCTCCGGCGGGGAGTCCATTGCTAGCTGATTGGAACACCCGCAAAGTGAGGTAAGGAGAGGAATTTTGCTAAGATTTTACTGCTGCAAAGATTTTACTGCTGCAAACAGTTCTGTAGCTTGTCTGGAAAAAAGCACCAGGCATTACAAAACATAGTTGCATACACCATACTTTACAGTTTAGTA]
[+] EMBL AK063471 [GTCAATCGCGATCTCCCTTCTGTTATCCCCCTCTCGTCTCGATGTCATCGCCGCCGCCGCCGCCGCCGCCGTGTCCTGCTGCGGCGTGCGACGACGGGTGGCTCTCCCTGTCCGTCTCGACGGTGTCGGGAGAGAGCAATCAAAAGCGCCTCAAGCGAGGAGGCGGAGGAGGTGGTGGAGGGGTCGGCGGCGGAGCGGTCGAGGATGATGGGTGCCCCCTCCACGACGAGGTCCTCCTCCTCGTGTTCGCGGAATGTTCGCTGGAGACAGACGATCTCGTCCGGTGCGCCGCCACCACGGTTCATCCCGTTGCCCTCCTACTCCTCCAGGTTCGCCGGCGGAGGCGAGCTCGACAAGGTGTTCGACAGCGGCCTCTTGAGCAACTCCCGCCTCATCGCGTCGCGCAAGGGCCTCCTCGTCCTCGAGCTCCGCCGCTCCTCGCGCGCCGCGGCCGTCAGGCTCGTCGTGTGCAACCCCATGACCGGGGACATGGCCACCCTCCCCATCCTCGCCGGGAAGGACAGGCCCGGGCACTACGCGTGCGCGCTAATCACCTTCGACGACCACGAGGGCGCGCCGGATCGGCTCGGCTTCGTCCATGACCCCGCCGCGTTCCGCCTGCTCCTCGTCTACAAGCGCCGCAACTTCACGGCGTGCCGATCCTACTGGTCGGACACCAAGGCCTGGGATGCGGAGGGCAAGCTGTCCGGTGCCAAGATCGGCGGCAGGCGCCTCGGCGAGATGACCGGCGCGGTGGCCGTCCGCGGCTCCGTGTTCTGGCTGCTAAAGAACCTGCTGTTCGTCGTCCGCCTCGGCGCGCTGAAGGCTACCACCGAGACCTTCCCATCAAAATGGTGCAGCAAGCTCTGCTTCTGCTACGGCAGCCCGGTGCAGAACCGCCAGCTCGCCGTCACGCCGGACGGCCGGCTCTGCGCCGTGCAGGTGGACCGACACGTGACGAGCAACAACACCGTGAGGATCAACGTCATCTCCCGCCACGACGGCTACGGCCCGCCGACATGGGAGTGCGACAATGCGCGCGACGTGGAGCTCAACCGCGTGCTGCCCATGGCGAACGTGAGGAGGGTTTGCCTGAGGGGCGTGTGCGAGAGGAGCGGGGTCGTCTTCCTCGCCATCGGCACCGACTTGTACAACCAGCAGCCGGACCTGGCGCTCTACGCGCTGGACATGGACAAGAAGGAGGCACGGAAGGTGGCGGCGCCGCCGGGCCACTGCCGCCGGTTGTCGTCGAGCTTCTTCGGCTACGAGATGGACCGTGTGGCCTACCTCGCCTCCCTCTCCGGCGGGGAGTCCATTGCTAGCTGATTGGAACACCCGCAAAGTGAGGTAAGGAGAGGAATTTTGCTAAGATTTTACTGCTGCAAAGATTTTACTGCTGCAAACAGTTCTGTAGCTTGTCTGGAAAAAAGCACCAGGCATTACAAAACATAGTTGCATACACCATACTTTACAGTTTAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_119#0 CGTCAATCCCTATCTCCATTTGGATCTCTCCCTCTCGACTCCATGTT---------GCCG 51
consensus_119#1 -GTCAATCGCGATCTCCCTTCTGTTATCCCCCTCTCGTCTCGATGTCATCGCCGCCGCCG 59
******* * ****** ** * * ** ******** *** **** ****
consensus_119#0 CCGCCGCCGCTGCGTTCCGTTGCGGCAAGCGGCGACGGGTGGCTCTCCCTCTCCGTCTCC 111
consensus_119#1 CCGCCGCCGCCGTGTCCTGCTGCGGCGTGCGACGACGGGTGGCTCTCCCTGTCCGTCTCG 119
********** * ** * * ****** *** ****************** ********
consensus_119#0 ACGGAGTCCACGGGG-----TCAGGAGAG-----AGCAACAAG-CGCCTCAAGCG----A 156
consensus_119#1 ACGGTGTCGGGAGAGAGCAATCAAAAGCGCCTCAAGCGAGGAGGCGGAGGAGGTGGTGGA 179
**** *** * * *** ** * *** * ** ** * * * *
consensus_119#0 GGCGGCGGCGGCGGATCGGTCGAGGACGATGGGTTCCCCCTCCACGACGAGGTCCTCCTC 216
consensus_119#1 GGGGTCGGCGGCGGAGCGGTCGAGGATGATGGGTGCCCCCTCCACGACGAGGTCCTCCTC 239
** * ********** ********** ******* *************************
consensus_119#0 CTCGTGTTTGCGGCTAGCTCGCTGGATCTTCACGACCTCGTCCGGTGCACCGCCACTTGC 276
consensus_119#1 CTCGTGTTCGCGGAATGTTCGCTGGAGACAGACGATCTCGTCCGGTGCGCCGCCAC---- 295
******** **** * ******** **** ************ *******
consensus_119#0 AGGCGGTGGCGCCGCCTCGTCACCGGCAACGCGGAGTACATCTGCCGCTCCATGCTGCCC 336
consensus_119#1 ------------------------------------------------------------
consensus_119#0 TCCAGCCGCCTCATCCGCGACCTCGCCGTCGGCTTCTTCCACCAGAGCCACGAGGACGAA 396
consensus_119#1 ------------------------------------------------------------
consensus_119#0 TCGTCTTCCTCTGTCGTGCCGCCTCGGTTCGTCCCGTTGCCCTCGGCCTCCTCCAGGTTC 456
consensus_119#1 ----------------------CACGGTTCATCCCGTTGCCCTCCTACTCCTCCAGGTTC 333
* ****** ************* *************
consensus_119#0 GGCGGCGG---CGAGCTTGACAGGGTGCTCGACAACCCCGGCCTCTTCAAGAACTCCCGC 513
consensus_119#1 GCCGGCGGAGGCGAGCTCGACAAGGTGTTCGACAG---CGGCCTCTTGAGCAACTCCCGC 390
* ****** ****** **** **** ****** ********* * *********
consensus_119#0 CTCGTCGCATCACGGAAAGGCCGCCTCGTCGTCGAGCTCCGCCGCGCCTCCCGTGCCGCC 573
consensus_119#1 CTCATCGCGTCGCGCAAGGGCCTCCTCGTCCTCGAGCTCCGCCGCTCCTCGCGCGCCGCG 450
*** **** ** ** ** **** ******* ************** **** ** *****
consensus_119#0 GCCCTTAGGCTCGTCGTGTGCAACCCCATGACCGGTGACATGTCCGTCCTCCCCGTCCTC 633
consensus_119#1 GCCGTCAGGCTCGTCGTGTGCAACCCCATGACCGGGGACATGGCCACCCTCCCCATCCTC 510
*** * ***************************** ****** ** ******* *****
consensus_119#0 TCCGGGAAGGACAGGCCCGGGCTCTACGCGTGCGCGCTGCTCACCGCCGACGACCTTCAG 693
consensus_119#1 GCCGGGAAGGACAGGCCCGGGCACTACGCGTGCGCGCTAATCACCTTCGACGACCACGAG 570
********************* *************** ***** ******** **
consensus_119#0 GACTCCGCCGATCCGCTCC-CACCG-----GGTCCCGCCGCCTTCCGCCTGGTGGTCCTC 747
consensus_119#1 GGCGCGCCGGATCGGCTCGGCTTCGTCCATGACCCCGCCGCGTTCCGCCTGCTCCTCGTC 630
* * * * **** **** * ** * ******** ********* * ** **
consensus_119#0 TACAAGCGCCGCAGCTTCACGGCGTGCCGGTCCTACTCGTCGGACACCAATGCCTGGAGC 807
consensus_119#1 TACAAGCGCCGCAACTTCACGGCGTGCCGATCCTACTGGTCGGACACCAAGGCCTGGGAT 690
************* *************** ******* ************ ******
consensus_119#0 ACCGAGCGCAAGCTATCCGGCGTCAAGATCGGCGGGAAGCGCCTGGGCGACATGGCCGCC 867
consensus_119#1 GCGGAGGGCAAGCTGTCCGGTGCCAAGATCGGCGGCAGGCGCCTCGGCGAGATGACCGGC 750
* *** ******* ***** * ************ * ****** ***** *** *** *
consensus_119#0 GGTGTGACCTTCCGCGGCCGCGTGTTCTGGCTGGTGAACAGCGTGGTGTTCGTCCTCCAC 927
consensus_119#1 GCGGTGGCCGTCCGCGGCTCCGTGTTCTGGCTGCTAAAGAACCTGCTGTTCGTCGTCCGC 810
* *** ** ******** ************* * ** * * ** ******** *** *
consensus_119#0 TTGGACACGCTGGTGGCGACCACCGAGAACATCTCATGGCATTGGAGGTGGAACGGCAAG 987
consensus_119#1 CTCGGCGCGCTGAAGGCTACCACCGAGACCTTCCCATC------AAAATGGTGCAGCAAG 864
* * * ***** *** ********** * ** *** * *** * *****
consensus_119#0 CCATGCTTCTGCCTCGGTGACCCGGTGCCAAACCGCCGTCTCGCCGTCTCGCCGGACGGA 1047
consensus_119#1 CTCTGCTTCTGCTACGGCAGCCCGGTGCAGAACCGCCAGCTCGCCGTCACGCCGGACGGC 924
* ********* *** ******** ******* ********* **********
consensus_119#0 CGTCTCTGCGTGGTGCAGGTGGGTCGAAACTTGAGGACCTACAACCCGGTGA---TCAAC 1104
consensus_119#1 CGGCTCTGCGCCGTGCAGGTGGACCGACACGTGACGAGCAACAACACCGTGAGGATCAAC 984
** ******* ********** *** ** *** ** * ***** * **** *****
consensus_119#0 GTCTTCGCTCGCCATGACAGTGGCGGCTGCAATGGGAGCACGGCGCAGAAGATCAGGTGG 1164
consensus_119#1 GTCATCTCCCGCCACGACGGCTACGGCC---------------CGCCGA----CATG-GG 1024
*** ** * ***** *** * **** *** ** ** * **
consensus_119#0 AAGGTGGAGGAGGGCACGACGTGGAGCTGAGCCACCTGATTCCATTGGCGAACGTGAAGA 1224
consensus_119#1 AGTGCGACAATGCGCGCGACGTGGAGCTCAACCGCGTGCTGCCCATGGCGAACGTGAGGA 1084
* * * * ** ************ * ** * ** * ** ************ **
consensus_119#0 GGGTTTGTCTGAGGGGCGTCTGCGAGAAGAGCGGGCTCATCTTCCTCGCCATCGGCGCAG 1284
consensus_119#1 GGGTTTGCCTGAGGGGCGTGTGCGAGAGGAGCGGGGTCGTCTTCCTCGCCATCGGCACCG 1144
******* *********** ******* ******* ** ***************** * *
consensus_119#0 ACATGTACGCCAAGAAACCGGACCTGGCGCTGTACGCGCTGGACATGGAGAAGAAGGAGG 1344
consensus_119#1 ACTTGTACAACCAGCAGCCGGACCTGGCGCTCTACGCGCTGGACATGGACAAGAAGGAGG 1204
** ***** * ** * ************** ***************** **********
consensus_119#0 CGAGGCTGGTGCCGGCGCCCCCGGGCCGCTGCTGCGTTCGCCGGTCGTCGTGGAGCTTCT 1404
consensus_119#1 CACGGAAGGTGGCGGCGCCGCCGGGCCACTGC------CGCCGGTTGTCGTCGAGCTTCT 1258
* ** **** ******* ******* **** ******* ***** ********
consensus_119#0 TCGGGTACGAGTTGGACCGTGTGGACTACCTCGCCTCCCTCGCCGGTGGCGATTCCACCG 1464
consensus_119#1 TCGGCTACGAGATGGACCGTGTGGCCTACCTCGCCTCCCTCTCCGGCGGGGAGTCCATTG 1318
**** ****** ************ **************** **** ** ** **** *
consensus_119#0 CTAGATGATGGAACAAGCATCCATCTCTGCACTGAGGTAAGGAGAAGAAATTTGGGTCAG 1524
consensus_119#1 CTAGCTGATTGGAA-------CACCCGCAAAGTGAGGTAAGGAGAGGAATTTTGC-TAAG 1370
**** **** * * ** * * ************* *** **** * **
consensus_119#0 ATTTTACTGTTGTCAC-------CTGCTGAAGACAGCACTGTAGCTCGTCGGAAAAAACC 1577
consensus_119#1 ATTTTACTGCTGCAAAGATTTTACTGCTGCAAACAGTTCTGTAGCTTGTCTGGAAAAAA- 1429
********* ** * ****** * **** ******** *** * *****
consensus_119#0 AAATCAGGCATTATGAAACATATTTTCATACATCTTAATT-ACATCATATT- 1627
consensus_119#1 GCACCAGGCATTACAAAACATAGTTGCATACACCATACTTTACAGTTTAGTA 1481
* ********* ******* ** ****** * ** ** *** ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||