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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1713 fasta sequence
[GATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGTGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTGCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAGCTTCCGGGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAATGTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCGGTGATCTGATATTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGCGACAGCGCGCGCAGATGAACGGGAGGCACGATGAAGACATCAATCACGCCCACAGCACGCTCTCCGACGCTGCTGTCAATGGTGGTACATGAGCCGCGGCATCTGCTTTCCACCGGGAGTTTGTCTTCTCGCGTCGACCCCGAGGAGAATCCTCTGGGGGCGGATTGAGAACAACCGCCCGGTCCATCTGCATAGTGCATGCACATCCTGAACAAGATTCCAGCGGCAGAGGCAGCATTACACATGGTTTCCTTGTCGATTTCTGCTCATCCACCATCCTGGTACTATAGCATGATCGCAGATAAAACGAATGAAATGAATGGATGATTTGGTGCTCTAATCAATCGGGCGGTAGACGCTATTCAGGAATCAGGATCTTGGCCGCCGTAGTACGTTCTTCGGAGTCACTA-CTGTCGCTGTCCATAGTGGCCAGCTTAATCTTTCTGATCAAAAAAAAGA]
[+] EMBL AK069695 [GATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGTGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTGCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAGCTTCCGGGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAATGTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCGGTGATCTGATATTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGCGACAGCGCGCGCAGATGAACGGGAGGCACGATGAAGACATCAATCACGCCCACAGCACGCTCTCCGACGCTGCTGTCAATGGTGGTACATGAGCCGCGGCATCTGCTTTCCACCGGGAGTTTGTCTTCTCGCGTCGACCCCGAGGAGAATCCTCTGGGGGCGGATTGAGAACAACCGCCCGGTCCATCTGCATAGTGCATGCACATCCTGAACAAGATTCCAGCGGCAGAGGCAGCATTACACATGGTTTCCTTGTCGATTTCTGCTCATCCACCATCCTGGTACTATAGCATGATCGCAGATAAAACGAATGAAATGAATGGATGATT ]
[+] EMBL AK104063 [ TCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGTGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTGCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAGCTTCCGGGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAATGTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCGGTGATCTGATATTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGCGACAGCGCGCGCAGATGAACGGGAGGCACGATGAAGACATCAATCACGCCCACAGCACGCTCTCCGACGCTGCTGTCAATGGTGGTACATGAGCCGCGGCATCTGCTTTCCACCGGGAGTTTGTCTTCTCGCGTCGACCCCGAGGAGAATCCTCTGGGGGCGGATTGAGAACAACCGCCCGGTCCATCTGCATAGTGCATGCACATCCTGAACAAGATTCCAGCGGCAGAGGCAGCATTACACATGGTTTCCTTGTCGATTTCTGCTCATCCACCATCCTGGTACTATAGCATGATCGCAGATAAAACGAATGAAATGAATGGATGATTTGGTGCTCTAATCAATCGGGCGGTAGACGCTA ]
[+] EMBL CB649487 [ TGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTGCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAGCTTCCGGGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAATGTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCNGTGATCTGAT ]
[+] EMBL CA757349 [ ACCTTGGATTTATGGCCCTTCCAGAGCTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTGCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAACTTCCGGGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAATGTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCGGTGATCTGATATTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCANACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGAC ACANACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGG ]
[-] EMBL CB649488 [ GCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGCGACAGCGCGCGCAGATGAACGGGAGGCACGATGAAGACATCAATCACGCCCACAGCACGCTCTCCGACGCTGCTGTCAATGGTGGTACACGAGCCGCGGCATCTGCTTTCCACCGGGAGTTTGTCTTCTCGCGTCGACCCCGAGGAGAATCCTCTGGGGGCGGATTGAGAACAACCGCCCGGTCCATCTGCATAGTGCATGCACATCCTGAACAAGATTCCAGCGGCAGAGGCAGCATTACACATGGTTTCCTTGTCGATTTCTGCTCATCCACCATCCTGGTACTATAGCATGATCGCAGATAAAACGAATGAAATGAATGGATGATTTGGTGCTCTAATCAATCGGGCGGTAGACGCTATTCAGGAATCAGGATCTTGGCCGCCGTAGTACGTTCTTCGGAGTCACTAGCTGTCGCTGTCCATAGTGGCCAGCTTAATCTTTCTGATCAAAAAAAAGA]
[+] EMBL AU057104 [ TACTATAGCATGATCGCAGATAAAACGAATGAAATGAATGGATGATTTGGTGCTCTAATCAATCGGGCGGTAGACGCTATTCAGGAATCAGGATCTTGGCCGCCGTAGTACGTTCTTCGGAGTCACTA NTGTCGCTGTACATAGTGGCCAGCTTAATCTTTCTGATCAAAAAAA ]
consensusID : consensus_11903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1293 fasta sequence
[ATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGTGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGGTATTGTAGAAGTCTTCTCCCTATATACTCCCTGAACAAGCCTAGCTTAGTACAGTCAGCCTGTCTATTAGATGAACTTGCCTATACTTTATACTATGCTGGATCCTACTTTCTCCGTCCCAAAATAAACAAACATATTATGAGATGCGATAACCTGCTCAGATCATTATACTAGAATACGTCACATCTCATGATTTGTTTATTGAGACGGAGCGAGTACTACTAAATTTGTTTACAACCCTTGCTAGTTTAATTACTCCCTCCATCCTAATAATATACTACCTCCGT]
[+] EMBL AK063393 [ATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGTGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGGTATTGTAGAAGTCTTCTCCCTATATACTCCCTGAACAAGCCTAGCTTAGTACAGTCAGCCTGTCTATTAGATGAACTTGCCTATACTTTATACTATGCTGGATCCTACTTTCTCCGTCCCAAAATAAACAAACATATTATGAGATGCGATAACCTGCTCAGATCATTATACTAGAATACGTCACATCTCATGATTTGTTTATTGAGACGGAGCGAGTACTACTAAATTTGTTTACAACCCTTGCTAGTTTAATTACTCCCTCCATCCTAATAATATACTACCTCCGT]
consensusID : consensus_11903#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence
[CGGATGCGGAGCCAGATTGATGGGAAACCAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGGGGGGTCTTTTACTCCTGGGGCGGTGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACTGTAGGAGCTGCAGCGGCCAGGGTGGGAGTGGGGGTGGCGCCGCAGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCCAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCACTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCTGGACCTTGGATTTATGGCCCTTCCATGGACTTTTCGTCCTTTTATTTATCATAGCAAAAGATTCTACTCTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTAGCTTCGCAGGTTTTAAGAATCATT]
[+] EMBL CB642721 [CGGATGCGGAGCCAGATTGATGGGAAACCAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGGGGGGTCTTTTACTCCTGGGGCGGTGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACTGTAGGAGCTGCAGCGGCCAGGGTGGGAGTGGGGGTGGCGCCGCAGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCCAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCACTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCTGGACCTTGGATTTATGGCCCTTCCATGGACTTTTCGTCCTTTTATTTATCATAGCAAAAGATTCTACTCTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTAGCTTCGCAGGTTTTAAGAATCATT]
consensusID : consensus_11903#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence
[GAGTTTCCCACTAAGCCTATTAAACCCGGAACACCCACTGGGGACTCCCTCACCTGATCCCGGTGTAATTGGTAAGGAAAAATGTTCCTTGCTCTCCCCCCCTAATATAACTCTCCCCTGGAACACACAGCCCCTAGGCCCCTTTTAAGGTGACCACGTCCACGCCCTGCGTGTCTAATTAGATGAACTTGCCTATACTTTATACTATGCTGGATCCTACTTTCTCCGTCTCAAAATAAACCAACATATTATGAGATGCGATAACCTGCTCAGATCATTATACTAGAATACGTCACATCTCATGATTTGTTTTTTGAGACGGAGCGAGTACTACTAAATTTGTTTACAACCCTTGCTAGTTTAATTACTCCCTCCCAAAAAAAAAA]
[+] EMBL BI802415 [GAGTTTCCCACTAAGCCTATTAAACCCGGAACACCCACTGGGGACTCCCTCACCTGATCCCGGTGTAATTGGTAAGGAAAAATGTTCCTTGCTCTCCCCCCCTAATATAACTCTCCCCTGGAACACACAGCCCCTAGGCCCCTTTTAAGGTGACCACGTCCACGCCCTGCGTGTCTAATTAGATGAACTTGCCTATACTTTATACTATGCTGGATCCTACTTTCTCCGTCTCAAAATAAACCAACATATTATGAGATGCGATAACCTGCTCAGATCATTATACTAGAATACGTCACATCTCATGATTTGTTTTTTGAGACGGAGCGAGTACTACTAAATTTGTTTACAACCCTTGCTAGTTTAATTACTCCCTCCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11903#0 GATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGT 60
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 -ATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGT 59
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 GCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGC 120
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 GCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGC 119
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 GCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGG 180
consensus_11903#2 -------------------------------------CGGATGCGGAGCCAGATTGATGG 23
consensus_11903#1 GCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGG 179
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 GAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGG 240
consensus_11903#2 GAAACCAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGGGGGGTCTTTTACTCCTGGGGCGG 83
consensus_11903#1 GAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGG 239
consensus_11903#3 -----------------GAGTTTCCCACTAAGCCTATTAAACCCGGAACACCCACTGGGG 43
** * * * * ** ** * **
consensus_11903#0 CGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTT 300
consensus_11903#2 TGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTT 143
consensus_11903#1 CGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTT 299
consensus_11903#3 ACTCCCTCACCTGATCCCGGTGTAATTGGTAAGGAAAAATGTTCCTTGCTCTCCCCCCCT 103
** ** * * * ** * * *** * * * *
consensus_11903#0 GATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGG 360
consensus_11903#2 GATCGCGTCGCACTGTAGGAGCTGCAGCGGCCAGGGTGGGAGTGGGGGTGGCGCCGCAGG 203
consensus_11903#1 GATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGG 359
consensus_11903#3 AATATAACTCTCCCCTGGAACACACAGCCCCTAGGCCCCTTTTAAGGTGACCACGTCCAC 163
** * * * * **** ** ** * * *
consensus_11903#0 GTGCGGCCATGACGATTTACAT-AGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACC 419
consensus_11903#2 GTGCGGCCATGACGATTTACAT-AGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACC 262
consensus_11903#1 GTGCGGCCATGACGATTTACAT-AGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACC 418
consensus_11903#3 GCCCTGC-GTGTCTAATTAGATGAACTTGCCTATACTTTATACTATGCTGGATCCTACTT 222
* * ** ** * * *** ** * * * * * **** *** *
consensus_11903#0 ACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGA 479
consensus_11903#2 ACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCCAGAAGTGGGGATTGCTCCTCGCCGGA 322
consensus_11903#1 ACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGA 478
consensus_11903#3 TCTCCGTC-TCAAAATAAACCAACATATTATG--AGATGCGATAACCTGCTCAGATCATT 279
* * * ** * * * * * *** * * * * *
consensus_11903#0 AT--TGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGAC 537
consensus_11903#2 AT--TGTGTTTCACTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGAC 380
consensus_11903#1 AT--TGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGAC 536
consensus_11903#3 ATACTAGAATACGTCACATCTCATGATTTGTTTTTTGAGACG-GAGCGAGTACTACTAAA 338
** * * * * ** * * * * * *** * * * * * *
consensus_11903#0 CTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAG 597
consensus_11903#2 CTGGTCCACTTCTGCTGGACCTTGGATTTATGGCCCTTCCA------------------- 421
consensus_11903#1 CTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCA------------------- 577
consensus_11903#3 TTTGTTTACAACCCTTGCTAGTTTAATTACT--CCCTCCCAAAAAAAAAA---------- 386
* ** ** * * ** *** * **** ***
consensus_11903#0 GTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTC 657
consensus_11903#2 --------------------------------------------------TGGACTTTTC 431
consensus_11903#1 ------------------------------------------------------------
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 ATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAG 717
consensus_11903#2 GTCCTTTTATTTATCATAGCAAAAGATTCTACTCTGTCCTAATCTGGCGCCGGGTGCTAG 491
consensus_11903#1 ------GAGTTTGGGCAAGACAAAGGTTAT--------CTAAGTGAGAGC---ATATTTG 620
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 CCTTTTTAGTT-GCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAGCTTCCG 776
consensus_11903#2 CCTTTTTAGTTAGCTTCGCAGGTTTTAAGAATCATT------------------------ 527
consensus_11903#1 CTTCCATCTTC-GCTTCCTTTGTTTTATGGACTTTT------------------------ 655
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 GGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAAT 836
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 ------------------------------------------------------------
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 GTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCGGTGATCTG 896
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 ------------------------------------------------------------
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 ATATTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGT 956
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 -------CATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGT 708
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 TCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATA 1016
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 TCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATA 768
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 ATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTA 1076
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 ATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTA 828
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 GTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCT 1136
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 GTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCT 888
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 TTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGA 1196
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 TTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGA 948
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 CTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGCGA 1256
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 CTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGGTA 1008
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 CAGCGCGCGCAGATGAACGGGAGGCACGATGAAGACATCAATCACGCCCACAGCACGCTC 1316
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 TTGTAGAAGTCTTCTCCCTATATACTCCCTGAACAAGCCTAGCTTA--------GTACAG 1060
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 TCCGACGCTGCTGTCAATGGTGGTACATGAGCCGCGGCATCTGCTTTCCACCGGGAGTTT 1376
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 TCAGCCTGTCTATTAGATGAACTTGCCTATACTTTATACTATGCT--------GGATCCT 1112
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 GTCTTCTCGCGTCGACCCCGAGGAGAATCCTCTGGGGGCGGATTGAGAACAACCGCCCGG 1436
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 ACTTTCTCCGTCCCAAAATAAACAAACATATTATGAGATGCGATAACCTGCTCAGATCAT 1172
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 TCCATCTGCATAGTGCATGCACATCCTGAACAAGATTCCAGCGGCAGAGGCAGCATTACA 1496
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 TATACTAGAATACGTCACATCTCATGATTTGTTTATTGAGACGGAGCGAGTACTACTAAA 1232
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 CATGGTT----TCCTTGTCGATTTCTGCTCATCCACCATCCTGGTACTATAGCATGATCG 1552
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 TTTGTTTACAACCCTTGCTAGTTTAATTACTCCCTCCATCCTAATAATATACTACCTCCG 1292
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 CAGATAAAACGAATGAAATGAATGGATGATTTGGTGCTCTAATCAATCGGGCGGTAGACG 1612
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 T----------------------------------------------------------- 1293
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 CTATTCAGGAATCAGGATCTTGGCCGCCGTAGTACGTTCTTCGGAGTCACTACTGTCGCT 1672
consensus_11903#2 ------------------------------------------------------------
consensus_11903#1 ------------------------------------------------------------
consensus_11903#3 ------------------------------------------------------------
consensus_11903#0 GTCCATAGTGGCCAGCTTAATCTTTCTGATCAAAAAAAAGA 1713
consensus_11903#2 -----------------------------------------
consensus_11903#1 -----------------------------------------
consensus_11903#3 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||