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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1178 fasta sequence
[AGCTGGC-GCTGGC-GGC-GC-GC-GC-GC-GGGC-GCAGCTGTCGCC-GGGGTTCTACTC-GGCGAGCTGCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGCGCGCCGGCGCCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACGCGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGG-GCGTCGGCCCC-AACGCCGTCGGCTCGACGACCGTCTTCGACCTCGTCGACACCATCAAGGCCCAGG-TCGAGGCCGTCTGCCCCGCCACCGTCTCCTGCGCCGACGTCCTCGCCATCGCCGCGCGCGACAGCGTCAACCTGCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGCCGCGACGCGCTGTCGCCGAGTCG-GAGCGCGGTGTCGACCGACCTCCCGGGCCCCGAGGCCGACATCTCCGCGCTCGTCTCCGCCTTCGCCGCCAAGGGCCTGAGCTCGCGCGACCTCGCCGCGCTGTCCGGCGCGCACACCGTCGGCCGCGCCAGCTGCGTCAACTTCCGCACCCGCGTCTACTGCGACGCCAACGTGAGCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCC-GC-GCTGGCGCCGC-TGGACTCCCTGACCCCCGACGCGTTC-GACAACGGCTACTACCGCAACCTCGTCGCCGGCGCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCT-CGTCGGACTTCGCCGCGTCCATGATCAGGCTC-GGGAACATC-GGCCCGTTGACCGGGTCAACCGGCGAGGT-CAGGCTCAACTGCAGGAAAGTGAATT-CCT-GAT-CGAT-ACT-ACT-AGATAGCATT-GCC-GCGCGCAAATT-GTT-CAT-AGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGCAATAGAAATGTCCCAATTTTAGACATCAATCACTAGTGGATAATTCTTCCGTTTGTTCAATTAATTAAACCTTGCTTAATTCAGCTACCTGTAACTATTGCGACGGCTATGATTTTTGNAATGAANANAANAGNTTTAAAAAAAAAA]
[+] EMBL AU184788 [AGCTGGCAGCTGGCAGGCAGCAGCAGCAGCAGGGCAGCAGCTGTCGCCAGGGGTTCTACTCAGGCGAGCTGCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGCGCGCCGGCGCCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACGCGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGG GCGTNGGCCCC AACGCCGTCGGCTCGACGACCGTCTTCAACCTCGTCGACACCATCAAGGCCCAGGTTCGAGGCCGTTTGCCCCGCCACCGTNTCCT ]
[+] EMBL AK099886 [ GCTGGC GCTGGC GGC GC GC GC GC GGGC GCAGCTGTCGCC GGGGTTCTACTC GGCGAGCTGCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGCGCGCCGGCGCCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACGCGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGG GCGTCGGCCCC AACGCCGTCGGCTCGACGACCGTCTTCGACCTCGTCGACACCATCAAGGCCCAGG TCGAGGCCGTCTGCCCCGCCACCGTCTCCTGCGCCGACGTCCTCGCCATCGCCGCGCGCGACAGCGTCAACCTGCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGCCGCGACGCGCTGTCGCCGAGTCG GAGCGCGGTGTCGACCGACCTCCCGGGCCCCGAGGCCGACATCTCCGCGCTCGTCTCCGCCTTCGCCGCCAAGGGCCTGAGCTCGCGCGACCTCGCCGCGCTGTCCGGCGCGCACACCGTCGGCCGCGCCAGCTGCGTCAACTTCCGCACCCGCGTCTACTGCGACGCCAACGTGAGCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCC GC GCTGGCGCCGC TGGACTCCCTGACCCCCGACGCGTTC GACAACGGCTACTACCGCAACCTCGTCGCCGGCGCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCT CGTCGGACTTCGCCGCGTCCATGATCAGGCTC GGGAACATC GGCCCGTTGACCGGGTCAACCGGCGAGGT CAGGCTCAACTGCAGGAAAGTGAATT CCT GAT CGAT ACT ACT AGATAGCATT GCC GCGCGCAAATT GTT CAT AGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGCAATAGAAATGTCCCAATTTTAGACATCAATCACTAGTGGATAATTCTTC ]
[+] EMBL AK104670 [ GCTGGC GCTGGC GGC GC GC GC GC GGGC GCAGCTGTCGCC GGGGTTCTACTC GGCGAGCTGCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGCGCGCCGGCGCCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACGCGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGG GCGTCGGCCCC AACGCCGTCGGCTCGACGACCGTCTTCGACCTCGTCGACACCATCAAGGCCCAGG TCGAGGCCGTCTGCCCCGCCACCGTCTCCTGCGCCGACGTCCTCGCCATCGCCGCGCGCGACAGCGTCAACCTGCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGCCGCGACGCGCTGTCGCCGAGTCG GAGCGCGGTGTCGACCGACCTCCCGGGCCCCGAGGCCGACATCTCCGCGCTCGTCTCCGCCTTCGCCGCCAAGGGCCTGAGCTCGCGCGACCTCGCCGCGCTGTCCGGCGCGCACACCGTCGGCCGCGCCAGCTGCGTCAACTTCCGCACCCGCGTCTACTGCGACGCCAACGTGAGCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCC GC GCTGGCGCCGC TGGACTCCCTGACCCCCGACGCGTTC GACAACGGCTACTACCGCAACCTCGTCGCCGGCGCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCT CGTCGGACTTCGCCGCGTCCATGATCAGGCTC GGGAACATC GGCCCGTTGACCGGGTCAACCGGCGAGGT CAGGCTCAACTGCAGGAAAGTGAATT CCT GAT CGAT ACT ACT AGATAGCATT GCC GCGCGCAAATT GTT CAT AGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGCAATAGAAATGTCCCAATTTTAGACATCAATC ]
[+] EMBL AK068642 [ GCTGGC GCTGGC GGC GC GC GC GC GGGC GCAGCTGTCGCC GGGGTTCTACTC GGCGAGCTGCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGCGCGCCGGCGCCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACGCGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGG GCGTCGGCCCC AACGCCGTCGGCTCGACGACCGTCTTCGACCTCGTCGACACCATCAAGGCCCAGG TCGAGGCCGTCTGCCCCGCCACCGTCTCCTGCGCCGACGTCCTCGCCATCGCCGCGCGCGACAGCGTCAACCTGCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGCCGCGACGCGCTGTCGCCGAGTCG GAGCGCGGTGTCGACCGACCTCCCGGGCCCCGAGGCCGACATCTCCGCGCTCGTCTCCGCCTTCGCCGCCAAGGGCCTGAGCTCGCGCGACCTCGCCGCGCTGTCCGGCGCGCACACCGTCGGCCGCGCCAGCTGCGTCAACTTCCGCACCCGCGTCTACTGCGACGCCAACGTGAGCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCC GC GCTGGCGCCGC TGGACTCCCTGACCCCCGACGCGTTC GACAACGGCTACTACCGCAACCTCGTCGCCGGCGCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCT CGTCGGACTTCGCCGCGTCCATGATCAGGCTC GGGAACATC GGCCCGTTGACCGGGTCAACCGGCGAGGT CAGGCTCAACTGCAGGAAAGTGAATT CCT GAT CGAT ACT ACT AGATAGCATT GCC GCGCGCAAATT GTT CAT AGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGCAATAGAAATGTCCCAAT ]
[+] EMBL C22713 [ GCTGGC GCTGGC GGC GC GC GC GC GGGC GCAGCTGTCGCC GGGGTTCTACTC GGCGAGCTGCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGCGCGCCGGCGNCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACGCGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGGNGCGTCGGCCCCAAACGCC ]
[+] EMBL AU076282 [ GGTNCCGCTCGGCCGCCGCNACGCGCTGTCGCCGAGTCGAAAGC CGGTGTCGACCGACCTCCCGGGCCCCGAGGCCGACATCTCCGCGCTCGTCTCCGCCTTCGCCGCCAAGGGCCTGAGCTCGCGCGACCTCGCCGCGCTGTCCGGCGCGCACACCGTCGGCCGCGCCAGCTGCGTCAACTTCCGCACCCGCGTCTACTGCGACGCCAACGTGAGCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCC GC GCTGGCGCCGC TGGACTCCCTGACCCCCGACGCGTTC GACAACGGCTACTACCGCAACCTCGTCGCCGGCGCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCT CGTCGGACTTCGCCGCGTCCATGATCAGGCTC GGGAACATC GGCCCGTTGACCGGGTCAACCGGCGAGGT CAGGCTCAACTGCAGGAAAGTGAATT CCT GAT CGAT ACT ACT AGATAGCATT GCC GCGCGCAAATT GTT CAT AGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGCAATAGAAATGTCCCAATTTTAGACATCAAaaaaaa ]
[+] EMBL BI807207 [ ctGCGCCAGTCCTNCCC GCGTCCGGCGGCGACTCCTGCTGCTGGCGCCGCGTGGACTCCCTGACCCCCGACGCGTTCTGACAACGGCTACTACCGCAACCTCGTCGCCGGCTCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAAC ACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCTGCGTCGGACTTCGCCGCGTCCATGATCAGGCTCTGGGAACATCTGGCCCGTTGACCGGGGCAACCGGCGAGGTGCAGGCTCAACTGCAGGAAAGTGAATTGCCTGGATGCGATGACTGACTGAGATAGCATTGGCCAGCGCGCAAATTGGTTGCATGAGTAC AAGNTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGC ATAGAAATGTCCC ATTTTAGACATCAAaaaaaaaa ]
[+] EMBL C20523 [ CACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCT CGTCGGACTTCGCCGCGTCCATGATCAGGCTC GGGAACATC GGCCCGTTGACCGGGTCAACCGGCGAGGT CAGGCTCAACTGCAGGAAAGTGAATT CCT GAT CGAT ACT ACT AGATAGNATT GCC GCGCGCAAATT GTT CAT AGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGANATAAGAATGCAATAGAAATGTCCCAATTTTAGANATCAATCACTAGTGGATAATTCTTCCGTTTGTTCAATTAATTAAACCTTGCTTAATTCAGCTACCTGTAACTATTGCGACGGCTATGATTTTTGNAATGAANANAANAGNTTTAAAAAAAAAA]
consensusID : consensus_11905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence
[GCTGGCGNTGGCGNCGCGCGCGCGGGCGAGTGTACGCCGGGGTTCTACTCGGCGAGCTGCCCCACCGTGCACGGCGTCGTNGGCAGGTCATGTCGNAGGCCGTCATGAACGACACGNGNGTCGTCGACGTCGTCCTCCGNCTCTTCTACCACGACTGNTTCGTCGTCGGCTGCGACGNGTCGNTGCTC]
[+] EMBL OSS10927A [GCTGGCGNTGGCGNCGCGCGCGCGGGCGAGTGTACGCCGGGGTTCTACTCGGCGAGCTGCCCCACCGTGCACGGCGTCGTNGGCAGGTCATGTCGNAGGCCGTCATGAACGACACGNGNGTCGTCGACGTCGTCCTCCGNCTCTTCTACCACGACTGNTTCGTCGTCGGCTGCGACGNGTCGNTGCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11905#0 AGCTGGCGCTGGCGGCGCGCGCGCGGGCGCAGCTGTCGCCGGGGTTCTACTCGGCGAGCT 60
consensus_11905#1 -GCTGGCGNTGGCGNCGCGCGCGCGGGCG-AGTGTACGCCGGGGTTCTACTCGGCGAGCT 58
******* ***** ************** ** ************************
consensus_11905#0 GCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGC 120
consensus_11905#1 GCCCCACCGTGCACGGCGTCGTN-GGCAGGTCATGTCGNAGGCCGTCATGAACGACACGN 117
********************** ************** ********************
consensus_11905#0 GCGCCGGCGCCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACG 180
consensus_11905#1 GNGTCGTCGACGTCGTCCTCCGNCTCTTCTACCACGACTGNTTCGTCGTCGGCTGCGACG 177
* * ** ** ** ********* ***************** ******* ***********
consensus_11905#0 CGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGGGCGTCGGCCCCAACG 240
consensus_11905#1 NGTCGNTGCTC------------------------------------------------- 188
**** *****
consensus_11905#0 CCGTCGGCTCGACGACCGTCTTCGACCTCGTCGACACCATCAAGGCCCAGGTCGAGGCCG 300
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 TCTGCCCCGCCACCGTCTCCTGCGCCGACGTCCTCGCCATCGCCGCGCGCGACAGCGTCA 360
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 ACCTGCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGCCGCGACGCGCTGTCGCCGA 420
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 GTCGGAGCGCGGTGTCGACCGACCTCCCGGGCCCCGAGGCCGACATCTCCGCGCTCGTCT 480
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 CCGCCTTCGCCGCCAAGGGCCTGAGCTCGCGCGACCTCGCCGCGCTGTCCGGCGCGCACA 540
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 CCGTCGGCCGCGCCAGCTGCGTCAACTTCCGCACCCGCGTCTACTGCGACGCCAACGTGA 600
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 GCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCCGCGC 660
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 TGGCGCCGCTGGACTCCCTGACCCCCGACGCGTTCGACAACGGCTACTACCGCAACCTCG 720
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 TCGCCGGCGCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACT 780
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 CGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCTCGTCGGACTTCGCCGCGTCCA 840
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 TGATCAGGCTCGGGAACATCGGCCCGTTGACCGGGTCAACCGGCGAGGTCAGGCTCAACT 900
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 GCAGGAAAGTGAATTCCTGATCGATACTACTAGATAGCATTGCCGCGCGCAAATTGTTCA 960
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 TAGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGA 1020
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 CATAAGAATGCAATAGAAATGTCCCAATTTTAGACATCAATCACTAGTGGATAATTCTTC 1080
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 CGTTTGTTCAATTAATTAAACCTTGCTTAATTCAGCTACCTGTAACTATTGCGACGGCTA 1140
consensus_11905#1 ------------------------------------------------------------
consensus_11905#0 TGATTTTTGNAATGAANANAANAGNTTTAAAAAAAAAA 1178
consensus_11905#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||